- Transcript 'KH2012:KH.L5.8.v3.A....' >
- Transcript 'Cisavi.CG.ENS81.R19....'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R19.60521-67309.07194.t
Possible name(s)
PABPC1; PABPC3; PABPC4
Gene model
Location
R19 [60,924 / 67,309]
Amino acid sequence
Length: 571
>Cisavi.CG.ENS81.R19.60521-67309.07194.p
YVGDLHLDVTEAMLYEKFSAAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTMN
YDPIKGRPIRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVSCN
ENGSKGYGFVHFETEEAGSRAIEKVNGMLLNDKKVFVGKFLTRSERVKKMGERVRQFTNV
YIKNFSDKLDEKALQAMFEQHGVVKSVAVMRDRDGNSRGFGFVAMETHEEAQIACEAMNG
MEVEGNSCDVVRRRKQERQQELRGQYEAQKQERIQRFQGVNLYVKNLDDNVTDDELREAF
STYGTITSAKIMSDGERSRGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRREDR
KAHLTAQYMQRMTSSMGVRMATPNQIMGQPFQTAGGASGYFMPFQGAQRTYMQSQIIRAT
PRWQHNPQGSFQPAFKYNQSVRNPTMAGYPQSGQPQSQQQTDPAMQQAVHVQGQEPLTSS
MLAAAQPQEQKQMLGERLYPLIEQSHPDLASKITGMLLEIDNSELLHMLESRESLKAKVE
EAVAVLQAHQVKVAAATRRPANTTPAAAATE
Nucleotide sequence
Length: 1,914
>Cisavi.CG.ENS81.R19.60521-67309.07194.t
GTTTTAGGAATTCATTCCCAAAAACACAAATAGTATTGCTATAAAACCACAAAAAAAATT
AAAAACTCTTTAAAACGCTCAAAAAAAGCATAAAATTTAAAAAACTTTTGTATTCAATTC
TCTACAAGCGCGAAAGGAATACTAAAAAAGATGACAATGAACAGCTCGGGAACAGCAACT
AGTTATCCAATGGCTTCACTTTACGTGGGGGATTTGCATCTTGACGTGACGGAGGCCATG
TTGTACGAGAAGTTCTCAGCAGCTGGACCGGTGCTATCTATCAGAGTGTGCAGGGATGTT
ATCACTCGTCGATCATTGGGTTATGCTTACGTCAACTTTCAGCAGCCAGCAGATGCTGAG
AGGGCATTGGACACTATGAATTATGACCCGATTAAAGGACGTCCAATTCGTATTATGTGG
AGCCAACGTGACCCATCTCTTCGAAAATCTGGTGTTGGCAACATATTCATCAAGAACTTG
GATAAATCCATTGATAACAAGGCTCTTTATGATACTTTTTCAGCTTTCGGCAATATTCTT
TCTTGCAAAGTGTCTTGTAATGAGAATGGATCGAAAGGATACGGCTTTGTTCATTTTGAG
ACAGAGGAAGCTGGCTCTAGAGCTATTGAAAAGGTGAACGGTATGTTGTTGAACGACAAG
AAAGTTTTCGTCGGAAAGTTTCTGACTCGCTCGGAGCGAGTGAAAAAGATGGGAGAACGT
GTTCGACAATTCACCAATGTCTACATTAAGAACTTCTCGGACAAACTTGATGAAAAGGCT
TTACAAGCCATGTTCGAGCAACACGGAGTTGTGAAGAGCGTTGCGGTGATGCGCGATCGG
GACGGGAACTCACGGGGATTCGGGTTTGTAGCCATGGAGACCCATGAGGAGGCACAGATA
GCGTGTGAAGCAATGAATGGAATGGAAGTCGAAGGTAATTCATGTGATGTGGTTCGCAGA
AGAAAACAGGAGCGGCAGCAAGAGCTTCGTGGTCAATATGAAGCTCAGAAGCAAGAACGC
ATCCAACGATTCCAAGGTGTCAACCTCTATGTGAAGAACTTGGATGACAATGTGACTGAT
GATGAGTTGCGTGAAGCTTTCTCAACTTACGGGACGATCACAAGTGCAAAGATCATGTCT
GATGGTGAGCGTTCGCGTGGGTTTGGTTTCGTTTGCTTTAGTTCACCTGAAGAAGCCACA
AAAGCCGTCACGGAAATGAACGGACGAATTGTTGGCACCAAACCATTGTATGTGGCTCTT
GCACAACGCAGGGAGGATAGGAAGGCACATCTAACAGCCCAGTACATGCAAAGAATGACT
TCAAGCATGGGAGTTAGAATGGCAACGCCAAACCAGATAATGGGTCAACCATTCCAAACA
GCCGGTGGCGCATCTGGTTATTTCATGCCATTCCAAGGTGCCCAGCGAACGTACATGCAG
AGTCAGATCATCCGTGCCACCCCAAGATGGCAGCATAACCCACAAGGAAGCTTCCAGCCT
GCATTCAAGTACAACCAAAGTGTGCGCAACCCAACGATGGCTGGATACCCACAATCTGGC
CAACCTCAGTCCCAGCAACAGACCGACCCAGCCATGCAACAAGCTGTTCATGTACAAGGA
CAGGAACCACTAACATCGAGCATGTTGGCTGCTGCACAACCTCAAGAGCAAAAACAAATG
CTGGGCGAAAGGTTGTACCCGTTGATTGAGCAATCCCATCCCGATCTTGCATCGAAGATA
ACTGGAATGTTGCTGGAAATCGACAACTCTGAGCTTCTTCACATGTTGGAGTCGCGTGAG
TCGTTGAAAGCCAAGGTGGAGGAGGCAGTTGCTGTTTTGCAAGCTCACCAGGTGAAAGTG
GCGGCAGCTACACGCCGCCCTGCTAATACAACCCCCGCTGCTGCTGCCACTGAA
| Gene3D |
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[1-79] 5.2E-23 - T[80-165] 1.4E-22 - T[166-251] 2.6E-22 - T[252-368] 2.7E-30 |
| TIGRFAM |
PABP_1234 (IPR006515) - T[1-466] 9.2E-185 |
| SMART |
RRM_dom (IPR000504) - T[1-72] 2.7E-17 - T[87-158] 3.5E-20 - T[179-251] 3.3E-23 - T[281-352] 2.6E-27 |
| ProSiteProfiles |
RRM_dom (IPR000504) - T[1-76] 17.012 - T[86-162] 15.835 - T[178-255] 16.347 - T[280-356] 19.741 |
| SUPERFAMILY |
RBD_domain_sf (IPR035979) - T[1-163] 5.77E-45 - T[177-360] 2.91E-47 |
| Pfam |
RRM_dom (IPR000504) - T[1-70] 1.2E-18 - T[88-154] 1.6E-17 - T[180-247] 4.6E-17 - T[282-349] 6.8E-21 |
| SMART |
RRM_dom_euk (IPR003954) - T[87-158] 1.4 - T[281-352] 0.49 |
| SUPERFAMILY |
PABP-dom (IPR036053) - T[425-555] 2.09E-43 |
| ProSiteProfiles |
PABP_HYD (IPR002004) - T[474-551] 22.181 |
| Pfam |
PABP_HYD (IPR002004) - T[480-546] 6.2E-30 |
| SMART |
PABP_HYD (IPR002004) - T[486-549] 1.4E-38 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PABP1_HUMAN | 62.825 % | 733 | 0 |
| PABP4_HUMAN | 60.987 % | 728 | 0 |
| PAP1L_HUMAN | 59.599 % | 672 | 0 |