- Transcript 'Haaura.CG.MTP2014.S2...' >
- EST 'AHC0AAA235YB21_RM1' >
- EST 'AHC0AAA220YF12_RM1' >
- Transcript 'Haaura.CG.MTP2014.S1...' >
- Transcript 'Cisavi.CG.ENS81.R19....'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R19.60521-67309.07195.t
Possible name(s)
PABPC1; PABPC3; PABPC4
Gene model
Location
R19 [60,924 / 67,273]
>Cisavi.CG.ENS81.R19.60521-67309.07195.p
SSGTATSYPMASLYVGDLHLDVTEAMLYEKFSAAGPVLSIRVCRDVITRRSLGYAYVNFQ
QPADAERALDTMNYDPIKGRPIRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS
AFGNILSCKVSCNENGSKGYGFVHFETEEAGSRAIEKVNGMLLNDKKVFVGKFLTRSERV
KKMGERVRQFTNVYIKNFSDKLDEKALQAMFEQHGVVKSVAVMRDRDGNSRGFGFVAMET
HEEAQIACEAMNGMEVEGNSCDVVRRRKQERQQELRGQYEAQKQERIQRFQGVNLYVKNL
DDNVTDDELREAFSTYGTITSAKIMSDGERSRGFGFVCFSSPEEATKAVTEMNGRIVGTK
PLYVALAQRREDRKAHLTAQYMQRMTSSMGVRMATPNQIMGQPFQTAGGASGYFMPFQGA
QRTYMQSQIIRATPRWQHNPQGSFQMAGDMRTVGPRAPTAPAIRPMTTPVGARGVIHPQH
QMMHQQAMPQVTTFNTPAFKYNQSVRNPTMAGYPQSGQPQSQQQTDPAMQQAVHVQGQEP
LTSSMLAAAQPQEQKQMLGERLYPLIEQSHPDLASKITGMLLEIDNSELLHMLESRESLK
AKVEEAVAVLQAHQVKVAAATRRPANTTPAAAATE
>Cisavi.CG.ENS81.R19.60521-67309.07195.t
TGCTATAAAACCACAAAAAAAATTAAAAACTCTTTAAAACGCTCAAAAAAAGCATAAAAT
TTAAAAAACTTTTGTATTCAATTCTCTACAAGCGCGAAAGGAATACTAAAAAAGATGACA
ATGAACAGCTCGGGAACAGCAACTAGTTATCCAATGGCTTCACTTTACGTGGGGGATTTG
CATCTTGACGTGACGGAGGCCATGTTGTACGAGAAGTTCTCAGCAGCTGGACCGGTGCTA
TCTATCAGAGTGTGCAGGGATGTTATCACTCGTCGATCATTGGGTTATGCTTACGTCAAC
TTTCAGCAGCCAGCAGATGCTGAGAGGGCATTGGACACTATGAATTATGACCCGATTAAA
GGACGTCCAATTCGTATTATGTGGAGCCAACGTGACCCATCTCTTCGAAAATCTGGTGTT
GGCAACATATTCATCAAGAACTTGGATAAATCCATTGATAACAAGGCTCTTTATGATACT
TTTTCAGCTTTCGGCAATATTCTTTCTTGCAAAGTGTCTTGTAATGAGAATGGATCGAAA
GGATACGGCTTTGTTCATTTTGAGACAGAGGAAGCTGGCTCTAGAGCTATTGAAAAGGTG
AACGGTATGTTGTTGAACGACAAGAAAGTTTTCGTCGGAAAGTTTCTGACTCGCTCGGAG
CGAGTGAAAAAGATGGGAGAACGTGTTCGACAATTCACCAATGTCTACATTAAGAACTTC
TCGGACAAACTTGATGAAAAGGCTTTACAAGCCATGTTCGAGCAACACGGAGTTGTGAAG
AGCGTTGCGGTGATGCGCGATCGGGACGGGAACTCACGGGGATTCGGGTTTGTAGCCATG
GAGACCCATGAGGAGGCACAGATAGCGTGTGAAGCAATGAATGGAATGGAAGTCGAAGGT
AATTCATGTGATGTGGTTCGCAGAAGAAAACAGGAGCGGCAGCAAGAGCTTCGTGGTCAA
TATGAAGCTCAGAAGCAAGAACGCATCCAACGATTCCAAGGTGTCAACCTCTATGTGAAG
AACTTGGATGACAATGTGACTGATGATGAGTTGCGTGAAGCTTTCTCAACTTACGGGACG
ATCACAAGTGCAAAGATCATGTCTGATGGTGAGCGTTCGCGTGGGTTTGGTTTCGTTTGC
TTTAGTTCACCTGAAGAAGCCACAAAAGCCGTCACGGAAATGAACGGACGAATTGTTGGC
ACCAAACCATTGTATGTGGCTCTTGCACAACGCAGGGAGGATAGGAAGGCACATCTAACA
GCCCAGTACATGCAAAGAATGACTTCAAGCATGGGAGTTAGAATGGCAACGCCAAACCAG
ATAATGGGTCAACCATTCCAAACAGCCGGTGGCGCATCTGGTTATTTCATGCCATTCCAA
GGTGCCCAGCGAACGTACATGCAGAGTCAGATCATCCGTGCCACCCCAAGATGGCAGCAT
AACCCACAAGGAAGCTTCCAGATGGCTGGGGACATGCGTACAGTTGGCCCCCGTGCTCCG
ACAGCCCCAGCAATCCGACCCATGACCACCCCAGTTGGGGCTCGTGGAGTTATTCACCCA
CAACACCAGATGATGCACCAACAAGCCATGCCCCAGGTAACCACCTTCAACACCCCTGCA
TTCAAGTACAACCAAAGTGTGCGCAACCCAACGATGGCTGGATACCCACAATCTGGCCAA
CCTCAGTCCCAGCAACAGACCGACCCAGCCATGCAACAAGCTGTTCATGTACAAGGACAG
GAACCACTAACATCGAGCATGTTGGCTGCTGCACAACCTCAAGAGCAAAAACAAATGCTG
GGCGAAAGGTTGTACCCGTTGATTGAGCAATCCCATCCCGATCTTGCATCGAAGATAACT
GGAATGTTGCTGGAAATCGACAACTCTGAGCTTCTTCACATGTTGGAGTCGCGTGAGTCG
TTGAAAGCCAAGGTGGAGGAGGCAGTTGCTGTTTTGCAAGCTCACCAGGTGAAAGTGGCG
GCAGCTACACGCCGCCCTGCTAATACAACCCCCGCTGCTGCTGCCACTGAA
Gene3D |
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[1-92] 1.7E-24 - T[93-178] 1.7E-22 - T[179-264] 3.1E-22 - T[265-381] 3.3E-30 |
SUPERFAMILY |
RBD_domain_sf (IPR035979) - T[10-176] 2.04E-46 - T[190-372] 3.72E-47 |
TIGRFAM |
PABP_1234 (IPR006515) - T[11-611] 3.8E-226 |
ProSiteProfiles |
RRM_dom (IPR000504) - T[11-89] 17.472 - T[99-175] 15.835 - T[191-268] 16.347 - T[293-369] 19.741 |
SMART |
RRM_dom (IPR000504) - T[12-85] 2.4E-21 - T[100-171] 3.5E-20 - T[192-264] 3.3E-23 - T[294-365] 2.6E-27 |
Pfam |
RRM_dom (IPR000504) - T[13-83] 3.0E-19 - T[101-167] 1.8E-17 - T[193-260] 5.3E-17 - T[295-362] 7.8E-21 |
SMART |
RRM_dom_euk (IPR003954) - T[100-171] 1.4 - T[294-365] 0.49 |
SUPERFAMILY |
PABP-dom (IPR036053) - T[481-619] 6.28E-44 |
ProSiteProfiles |
PABP_HYD (IPR002004) - T[538-615] 22.181 |
Pfam |
PABP_HYD (IPR002004) - T[544-610] 7.2E-30 |
SMART |
PABP_HYD (IPR002004) - T[550-613] 1.4E-38 |
Protein Name | Identity | Bit Score | e-value |
---|---|---|---|
PABP1_HUMAN | 64.006 % | 775 | 0 |
PABP4_HUMAN | 61.656 % | 765 | 0 |
PABP3_HUMAN | 58.906 % | 704 | 0 |