- Transcript 'Cisavi.CG.ENS81.R20....' >
- Transcript 'Cisavi.CG.ENS81.R20....'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R20.1229826-1236416.13645.t
Possible name(s)
LHCGR; RXFP1; RXFP2
Gene model
Location
R20 [1,229,825 / 1,236,416]
Amino acid sequence
Length: 515
>Cisavi.CG.ENS81.R20.1229826-1236416.13645.p
TIIPKRNVCDGKVDCPDLSDECPCQTPPDICKNITYFKNKNLPKIVYGKVYRLMRELWCD
GVIDCPFSGKDEEITRCPDRFHCPSENLISIPMSSICDGEVNCDDGRDESNETCSGRFYC
PVLDASKKCLHFQMYDGKGECSDWSDECPTTDRSRDSVFSSKYELIANPVLRAFVWIMAF
MAIAGNLATVSCSLRANHLLVLNLALSDLIMGIYLLLLGSAGAFYSGVYCANKLYWLSST
LCDVMGVMVVTSSEMSVLTMVMLTALRLYAVLNPFYSSTRPQIKVVIFFIAATWFFSLFL
SLLPLSVGLQGIFVGSAVMQDNPFFDNVVVDFQTTKNLAEKLYVFDRKHIDSSSVNIEEA
SSWKDYLSVTIAPYIPFTNICIHRYYSANSVCIPNLFVTSTVPAWGFTFFLMILNLSSFL
FVFIAYIAIYIKSSRTKLVKRTSKGFVRTSALEKKIVRLIASDFCCWVPVSVIGFISIGG
IPVPDIAYVVSAAVLLPINSALNPLFYSTFIDRML
Nucleotide sequence
Length: 1,545
>Cisavi.CG.ENS81.R20.1229826-1236416.13645.t
ACAATAATCCCCAAACGGAATGTTTGTGATGGAAAAGTAGATTGTCCAGATTTATCTGAC
GAATGTCCTTGCCAAACACCCCCGGACATATGTAAAAACATCACATACTTCAAAAACAAG
AATTTACCAAAGATTGTATACGGGAAAGTTTATAGACTCATGCGAGAATTGTGGTGCGAT
GGAGTTATTGACTGTCCTTTCTCCGGAAAGGATGAAGAAATCACCCGATGCCCGGATCGC
TTCCATTGTCCGTCTGAAAACCTTATAAGCATTCCAATGAGTAGCATTTGTGACGGGGAA
GTAAATTGCGATGACGGAAGAGATGAGAGTAATGAGACGTGTTCCGGAAGATTCTATTGT
CCTGTACTTGATGCAAGCAAGAAATGTCTACATTTCCAGATGTATGATGGAAAAGGCGAA
TGCTCAGACTGGAGCGACGAATGCCCGACCACTGACAGGTCGCGTGACAGTGTATTCTCA
TCGAAGTACGAATTGATAGCGAATCCAGTTCTTCGAGCCTTTGTATGGATAATGGCTTTC
ATGGCTATCGCTGGAAATTTGGCAACTGTGTCCTGCTCGCTACGAGCCAACCACCTACTG
GTTCTTAACCTAGCTTTGTCGGATTTGATCATGGGAATCTATCTATTGCTTCTTGGCTCT
GCCGGTGCGTTCTACAGCGGCGTTTACTGTGCCAACAAACTGTATTGGCTATCCAGCACA
TTATGTGACGTCATGGGCGTGATGGTGGTAACGTCATCTGAAATGTCAGTTCTAACAATG
GTCATGTTAACTGCATTAAGGCTGTACGCAGTATTAAATCCATTCTATTCGTCCACTCGA
CCACAAATAAAAGTTGTCATCTTCTTCATTGCTGCGACTTGGTTTTTCTCGTTGTTCCTG
TCTCTTTTGCCTCTCTCTGTGGGATTGCAAGGGATATTCGTAGGATCTGCAGTAATGCAA
GACAACCCATTTTTCGATAACGTCGTCGTTGATTTTCAAACTACGAAGAATTTAGCAGAA
AAGCTCTATGTATTTGATAGAAAACATATTGATTCAAGTTCAGTAAATATAGAAGAAGCG
AGTTCATGGAAAGATTATTTGTCTGTTACAATTGCTCCGTATATTCCTTTTACTAATATT
TGTATTCACAGGTATTATAGTGCAAACAGCGTGTGCATTCCAAACCTGTTCGTGACAAGC
ACTGTTCCGGCGTGGGGTTTCACATTCTTCCTCATGATTTTAAACCTCAGCTCCTTTTTA
TTCGTTTTCATCGCTTATATTGCGATTTACATCAAATCGAGTCGGACGAAGCTAGTAAAA
CGAACTTCAAAAGGATTTGTACGGACATCCGCGTTGGAGAAAAAGATCGTACGGCTCATC
GCTTCCGATTTCTGTTGCTGGGTCCCTGTGTCCGTGATAGGTTTTATAAGTATCGGGGGA
ATTCCCGTTCCTGATATTGCATACGTTGTTTCTGCTGCGGTCCTTCTACCCATCAACAGC
GCCCTGAATCCGCTCTTTTATTCCACATTTATAGACCGGATGTTG
| SUPERFAMILY |
LDL_receptor-like_sf (IPR036055) - T[2-33] 2.49E-5 - T[78-114] 8.9E-6 |
| CDD |
LDrepeatLR_classA_rpt (IPR002172) - T[3-21] 1.03749E-4 - T[78-111] 2.82997E-4 |
| SMART |
LDrepeatLR_classA_rpt (IPR002172) - T[3-26] 2.5 - T[76-116] 0.0015 |
| PANTHER |
TSHR/LHCGR/FSHR (IPR034298) - T[8-511] 9.5E-87 |
| ProSiteProfiles |
LDrepeatLR_classA_rpt (IPR002172) - T[76-115] 9.925 |
| PRINTS |
GPCR_Rhodpsn (IPR000276) - T[170-194] 1.6E-12 - T[197-218] 1.6E-12 - T[249-271] 1.6E-12 - T[285-306] 1.6E-12 - T[452-476] 1.6E-12 - T[489-515] 1.6E-12 |
| ProSiteProfiles |
GPCR_Rhodpsn_7TM (IPR017452) - T[173-507] 18.947 |
| Pfam |
GPCR_Rhodpsn (IPR000276) - T[195-307] 6.8E-10 |
| Protein Name | Identity | Bit Score | e-value |
|---|