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  1. Transcript 'Cisavi.CG.ENS81.R21....'

Transcript Model

Transcript Id

Cisavi.CG.ENS81.R21.1915842-1921202.11527.t

Possible name(s)

LARP6; LARP7; SSB

Location

R21 [1,915,841 / 1,921,202]

Sequences

Amino acid sequence

Length: 532

>Cisavi.CG.ENS81.R21.1915842-1921202.11527.p
MINEDTNANSQYIKHHQGILHQRQVYFGDETAIKCAQPQILAYPHHPSYTVIHPTFSPAV
YFQGYPAHIQPALQICPQGVYASPYGGNLVNMGYAHKNQQLQCKQNTMKKFKDDNKNYPT
DNSQVQFVSTPKRSPRYDSADSGIGEPTISMTSSWINDDTNSDSSSAYRRNSLSGSDSGI
EKDGNESYWTVDDDDTYWARFGQNAPPYYVTNPIAKQIEYYLSDEYLIKDKYLLRQIRCK
KDGYVSIKLITSFKKVKKLTRDWAVVRSAIVRLSSSIVVSSEGLRIRRRTNLSEVLRKPR
ILTSVLAIRLPEEFNSVESVTSLFALFGEIGFVRLLRPDKEIPSDLRNYATQVEDIGKTL
CAVVDFDQSEDALSSVRILKYLLKPNKGDCDDARDNETIIESEIARHEDSLKNIPSLGGT
RVALLGPRVRRTLYRQDRVSSSLNDEEAEPTSTLPLSVNADEESVNNDPRHVRHERGNDV
ATTSKLSPRFRIADRRQTCALLRHNSATVTRQPRGPDAGSRGFNFSRRNVIG

Nucleotide sequence

Length: 1,972

>Cisavi.CG.ENS81.R21.1915842-1921202.11527.t
GTCATTACAGGTACCTGATATAACACTGTAAAGGTTTGTTAGTTCTTCACAATGATAAAC
GAGGATACGAATGCAAATAGTCAATACATAAAACATCATCAGGGAATTTTGCACCAACGC
CAAGTTTACTTTGGAGATGAAACTGCGATTAAGTGTGCTCAGCCACAGATATTGGCCTAC
CCACATCACCCGAGCTACACCGTTATTCATCCCACTTTTAGCCCTGCAGTTTACTTTCAA
GGATATCCAGCTCATATTCAACCTGCATTGCAAATCTGTCCACAAGGTGTCTATGCATCT
CCATATGGAGGAAACTTGGTAAACATGGGTTATGCACATAAGAATCAACAACTTCAATGC
AAACAAAATACTATGAAGAAATTCAAAGATGATAATAAAAATTATCCAACGGACAACTCA
CAAGTACAATTCGTATCAACACCGAAACGATCACCTCGATACGACAGCGCCGATAGCGGG
ATTGGCGAACCAACTATTTCTATGACGTCATCATGGATTAATGACGACACAAATTCCGAT
TCTTCAAGCGCTTATAGAAGAAATTCACTTTCCGGGTCAGATTCTGGGATAGAAAAGGAT
GGAAATGAATCTTATTGGACAGTTGATGATGACGACACCTATTGGGCAAGATTTGGTCAA
AATGCACCCCCTTATTACGTCACAAACCCTATAGCCAAGCAAATCGAATACTACTTGTCG
GATGAGTATCTCATCAAAGACAAATATCTACTACGTCAGATCCGGTGCAAAAAAGATGGC
TACGTCAGCATAAAGCTTATAACGTCATTTAAAAAGGTTAAAAAACTCACACGTGACTGG
GCTGTGGTGCGAAGCGCTATTGTGCGGTTATCATCGTCTATCGTCGTCAGCTCTGAAGGT
CTTAGAATCCGAAGACGTACGAACCTTTCCGAAGTTCTACGAAAACCTCGGATTTTAACA
AGCGTTCTGGCTATTCGTCTACCGGAAGAGTTCAATTCAGTTGAAAGTGTGACGTCACTG
TTCGCATTATTCGGTGAAATTGGCTTTGTTCGGTTACTAAGACCAGACAAGGAGATCCCA
TCTGATTTAAGAAATTATGCAACACAAGTAGAAGATATAGGAAAAACTCTATGTGCGGTT
GTTGATTTTGACCAATCAGAGGACGCCTTGTCATCTGTGCGCATTTTGAAATATCTATTG
AAACCCAACAAAGGCGATTGTGACGACGCAAGAGACAATGAGACAATAATCGAAAGCGAA
ATTGCTAGACACGAAGATTCTTTAAAAAATATTCCGTCGTTAGGTGGCACGAGAGTCGCG
CTTCTTGGGCCAAGAGTAAGGAGAACGCTTTACCGGCAAGACCGAGTATCGAGCAGTTTA
AATGATGAAGAGGCGGAACCGACTTCAACGTTACCACTAAGCGTTAATGCTGATGAAGAG
TCAGTCAACAACGACCCACGTCACGTGCGACACGAGAGAGGAAATGACGTAGCTACTACT
TCAAAACTTTCACCGAGATTTCGGATTGCTGATCGTCGGCAAACTTGTGCTCTGTTACGT
CACAATTCGGCCACTGTTACGAGACAACCGAGAGGTCCTGACGCTGGATCGCGAGGATTC
AACTTTTCGAGAAGAAATGTGATTGGCTAGATTATGCAATCAAAACAATTTTAAACAATA
ATTCCCTTTTAAAGTCGAAATAATTTCCAGATCATATGATCAACCTTGCCACAATTGCAC
GCATTAACGCATTGTTTTTTTTTTATTATGAAATTGCCATTCTAATTAATGTGTTTTATC
GTACTTATACCTTTTTGTAGCTCTAACGTTTTGAATAAATTTTCGGTTTTTAAAAAAATG
TGTGGATTCTGATGAGAGAAGCCATGATTCATTAAACCACGCTAAACGAGTTTAAAAACT
TCGGACGGCTAAAACTGTCAATTGCAACCTCATATACGGTTATCATATTATA

InterProScan

ProSiteProfiles
La_HTH (IPR006630) - T[204-296] 21.282
SUPERFAMILY
WH_DNA-bd_sf (IPR036390) - T[206-295] 1.09E-20
Gene3D
WH-like_DNA-bd_sf (IPR036388) - T[208-293] 8.0E-23
SMART
La_HTH (IPR006630) - T[208-289] 1.9E-22
Pfam
La_HTH (IPR006630) - T[214-270] 1.9E-19

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
LARP6_HUMAN 30.12 % 116 7.03E-28