- Transcript 'Cisavi.CG.ENS81.R215...' >
- Transcript 'Cisavi.CG.ENS81.R215...'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R215.380006-398932.05664.t
Possible name(s)
ITGB1; ITGB6; ITGB7
Gene model
Location
R215 [381,628 / 398,693]
Amino acid sequence
Length: 771
>Cisavi.CG.ENS81.R215.380006-398932.05664.p
TQCTESKAKSCSDCISVPGCAWCEDSNYANNPNVLISRCDLPENLLTEGERCPENAIINP
KSNQSSPGGPHSNVGESAVGTATQIRPQIIKAQVRPGDPLNIELSFKQAEDYPVDLYYLL
DLSKSMENDLNSLRALGRELGMSMQNITRDFRLGFGSFIDKTVMPYISTVPAKIKNPCSD
KAPCVPTYSFHNDLPLTPEIEAFVTSVNNVTHSSNLDNPEGGLDAMMQAIVCKESINWRK
DATHLLVYSTDASFHYAGDGKLGGIVLPNDGRCYLNSKGHYYNANYMDYPSIGHLVRKIT
SHSIQPIFAVTSNVIQTYTNLQKMIPKSVVGELSGDSSNIQLIQDAYNDTERIRWAPIHW
VTGVACHPCYDVGTDSLGHRGGICLIQPFHSQVNFTFTLSTEKCLTSPVQVIVSPYGYNE
VVTINVESLCDCQCEETEAPTNNCSGHGNYQCGSCVCESGFTGLDCSCDQKDVLGIESYL
ANCTDPTTGVVCNRGGECQCGSCICTQYANKKIDGKYCECDNTSCKRAGGKVCNGTWICC
DCGDCICEPGWKGKACECTLEQALCYDHSDDALDSTKPCNGNGECECGQCVCKLSQGGAK
FRGQYCETKPLVVCDIHRDCIQCAWHTGNYNDTECKTQCMGYNVTVVSGMTEDYQYSGYS
QECRFTDLSDDCTYQANFEEIDGIIMVEVEPDKVCKTYANPVYIIIGIIAAIVGIGLAIL
LIWKLLTSIKDAREYKNFQKESQNPKWQGGENPIFKKATSTFKNPMYSAGK
Nucleotide sequence
Length: 2,914
>Cisavi.CG.ENS81.R215.380006-398932.05664.t
ACCCAATGCACGGAGAGCAAAGCCAAGTCATGCAGCGATTGCATAAGTGTCCCAGGGTGT
GCATGGTGTGAAGATTCTAACTATGCAAACAACCCGAATGTGTTGATTTCCCGATGTGAT
CTGCCTGAGAACCTCCTAACTGAAGGGGAAAGATGTCCGGAAAATGCAATAATCAACCCG
AAATCGAACCAATCTTCTCCTGGTGGACCACATTCAAACGTCGGAGAATCAGCTGTTGGA
ACTGCCACGCAGATACGACCACAGATCATAAAAGCACAAGTCAGACCAGGTGATCCATTG
AACATTGAGTTGTCATTCAAACAAGCTGAAGATTACCCAGTCGATCTATACTACCTCCTC
GATCTCTCCAAATCCATGGAGAACGATCTCAACTCCCTTCGAGCCCTCGGTCGCGAGCTT
GGAATGAGCATGCAGAATATCACGAGGGATTTCCGACTTGGTTTCGGGTCTTTTATTGAT
AAGACAGTAATGCCTTACATCTCCACTGTCCCTGCTAAGATAAAGAACCCGTGCAGTGAT
AAAGCTCCTTGCGTCCCAACATACAGCTTCCATAATGATCTACCATTGACGCCTGAAATT
GAAGCGTTTGTGACATCAGTCAACAACGTAACTCATTCATCCAACTTGGACAACCCTGAA
GGCGGGCTCGACGCAATGATGCAAGCTATTGTGTGCAAGGAAAGCATCAACTGGCGCAAA
GACGCAACTCATCTCCTGGTATATTCCACCGACGCGAGTTTCCACTACGCAGGAGATGGG
AAGTTGGGAGGAATCGTTCTTCCTAATGATGGGAGGTGTTATCTTAACAGTAAGGGGCAC
TACTACAATGCTAACTACATGGATTACCCATCAATCGGGCATTTAGTGAGAAAAATCACA
TCGCACAGTATTCAACCCATATTTGCCGTAACTTCGAATGTCATACAAACATACACAAAT
CTACAAAAAATGATCCCGAAATCGGTGGTTGGAGAATTATCTGGTGATTCATCAAACATT
CAACTTATACAAGATGCATACAATGATACTGAAAGGATCAGGTGGGCACCGATTCACTGG
GTCACAGGGGTGGCATGTCACCCCTGTTATGATGTAGGCACCGATTCACTGGGTCACAGG
GGTGGCATTTGCTTGATTCAACCATTTCATTCCCAGGTCAATTTCACGTTCACCCTCTCC
ACGGAGAAATGCCTGACGTCGCCGGTGCAAGTGATTGTGTCGCCGTACGGCTACAACGAG
GTCGTCACTATTAACGTCGAGTCATTGTGTGATTGTCAGTGCGAGGAGACAGAAGCGCCG
ACTAATAATTGCTCCGGCCACGGCAACTACCAGTGCGGATCCTGTGTCTGTGAGTCGGGT
TTCACGGGTCTGGATTGCTCATGTGACCAGAAGGATGTGCTGGGCATTGAATCCTACCTG
GCTAACTGCACCGACCCCACGACGGGTGTCGTGTGCAATAGGGGCGGCGAGTGTCAGTGC
GGCTCGTGCATTTGCACACAATATGCAAACAAGAAAATTGATGGGAAATACTGTGAATGT
GACAACACTTCATGTAAACGTGCTGGAGGAAAAGTCTGTAATGGTACGTGGATATGTTGC
GATTGCGGCGATTGTATATGCGAGCCTGGGTGGAAGGGCAAAGCGTGCGAATGTACGTTG
GAACAAGCGTTATGCTACGACCACAGTGATGATGCGTTGGATTCGACCAAACCTTGTAAT
GGCAATGGGGAATGTGAATGTGGACAATGCGTTTGCAAACTTAGTCAGGGTGGAGCTAAG
TTCCGCGGTCAATATTGCGAAACGAAACCGCTGGTTGTTTGCGACATTCATCGAGATTGC
ATCCAATGCGCATGGCACACTGGCAACTATAATGATACTGAGTGCAAGACGCAGTGTATG
GGGTATAATGTGACTGTGGTAAGTGGGATGACAGAAGATTATCAATACAGCGGGTACAGC
CAGGAATGTCGATTCACTGATCTGTCTGACGATTGTACTTACCAAGCTAACTTTGAGGAA
ATTGATGGGATTATTATGGTAGAAGTGGAGCCTGATAAAGTGTGCAAGACATACGCGAAC
CCAGTATACATCATCATCGGAATTATCGCTGCTATCGTGGGAATTGGGCTGGCCATCCTA
CTTATATGGAAGCTGCTAACCTCTATCAAGGACGCCAGGGAATATAAGAACTTCCAGAAA
GAATCACAGAATCCTAAATGGCAGGGGGGCGAGAATCCAATATTCAAGAAAGCAACCTCA
ACATTCAAAAACCCAATGTATTCGGCTGGGAAGTCTGGTGGAAATTTGTGATGATTCTAC
ATATATATGTATACTACACCACATATCCGACCAAACTACTAAGGGAAATCCCCCAATTAA
CTACTTTGCGTGAGCATGCAGCATATGTATTAAACTACCGCAATACTTGTGGTACGAACC
ATTCCTATATTAAGGTACTTTCTCTTTAAAACGCGATGAAATTTTGATGACGTGTTCATA
TTAAGTGTTCTTTATGCCTCCTGTTTTGCTACTGATCATCTAATCACTAATAATTAATCG
TGTTTTAAAACCCGGTACAGTTTTTTTACCAATTTGTTTGTTCACATACGGTGCTCTGCG
TATTACTAAATTGCTTTGCTCAAATCGTCGAAACTATACTTCTTATCCACGCATATAATA
GGCAATTTCTACCGAACTTTGCGCTAATCACATTTTTTCTTTGCTTTTTACTTTTCTACG
TCTGTAAAAATCAATTTCTGTAATTGCCAAGAATATTTAACCCCTGCATAACCGCTGTAT
TAAACTATGTCGCATGCTGTTTCTTAGCTCAGCGTGCTTTAATATAACACAACGACAAAA
ACTTAAATGAATTTACCGATTTTCCCCCTTTTTT
| PIRSF |
Integrin_bsu (IPR015812) - T[1-771] 2.9E-234 |
| SMART |
PSI (IPR016201) - T[2-53] 6.7E-4 |
| Pfam |
Integrin_beta_N (IPR033760) - T[2-53] 9.0E-10 |
| PANTHER |
Integrin_bsu (IPR015812) - T[2-769] 2.2E-224 |
| PRINTS |
Integrin_bsu (IPR015812) - T[7-23] 9.8E-93 - T[84-97] 9.8E-93 - T[112-130] 9.8E-93 - T[152-171] 9.8E-93 - T[184-203] 9.8E-93 - T[217-239] 9.8E-93 - T[244-259] 9.8E-93 - T[288-311] 9.8E-93 - T[324-348] 9.8E-93 - T[579-592] 9.8E-93 - T[699-716] 9.8E-93 - T[716-734] 9.8E-93 - T[751-761] 9.8E-93 |
| SMART |
Integrin_bsu_VWA (IPR002369) - T[10-432] 4.5E-175 |
| Pfam |
Integrin_bsu_VWA (IPR002369) - T[109-349] 4.4E-104 |
| SUPERFAMILY |
vWFA_dom_sf (IPR036465) - T[109-349] 3.02E-75 |
| Gene3D |
vWFA_dom_sf (IPR036465) - T[111-350] 9.3E-128 |
| SUPERFAMILY |
Integrin_dom_sf (IPR032695) - T[380-436] 4.66E-8 |
| ProSitePatterns |
Integrin_bsu (IPR015812) - T[579-592] . |
| SMART |
Integrin_bsu_tail (IPR012896) - T[614-700] 2.9E-18 |
| Pfam |
Integrin_bsu_cyt_dom (IPR014836) - T[724-767] 7.5E-21 |
| SMART |
Integrin_bsu_cyt_dom (IPR014836) - T[724-770] 9.8E-23 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| ITB7_HUMAN | 37.209 % | 491 | 8.18E-163 |
| ITB6_HUMAN | 37.339 % | 483 | 4.21E-160 |
| ITB1_HUMAN | 40.704 % | 521 | 1.26E-174 |