- Transcript 'Cisavi.CG.ENS81.R215...' >
- Transcript 'Cisavi.CG.ENS81.R215...'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R215.380006-398932.05665.t
Possible name(s)
ITGB1; ITGB6; ITGB7
Gene model
Location
R215 [381,628 / 398,086]
Amino acid sequence
Length: 794
>Cisavi.CG.ENS81.R215.380006-398932.05665.p
TQCTESKAKSCSDCISVPGCAWCEDSVTRNYKLFPKNYANNPNVLISRCDLPENLLTEGE
RCPENAIINPKSNQSSPASGNRPHSNVGESAVGTATQIRPQIIKAQVRPGDPLNIELSFK
QAEDYPVDLYYLLDLSKSMENDLNSLRALGRELGMSMQNITRDFRLGFGSFIDKTVMPYI
STVPAKIKNPCSDKAPCVPTYSFHNDLPLTPEIEAFVTSVNNVTHSSNLDNPEGGLDAMM
QAIVCKESINWRKDATHLLVYSTDASFHYAGDGKLGGIVLPNDGRCYLNSKGHYYNANYM
DYPSIGHLVRKITSHSIQPIFAVTSNVIQTYTVSNPLTKHIQSFSYLPKKTYISSNICAQ
WSIQPQVLLEIKSPAEVSVSSQTAHCLDGSVPGLQCDGVKLGNVVKQSCLIQPFHSQVNF
TFTLSTEKCLTSPVQVIVSPYGYNEVVTINVESLCDCQCEETEAPTNNCSGHGNYQCGSC
VCESGFTGLDCSCDQKDVLGIESYLANCTDPTTGVVCNRGGECQCGSCICTQYANKKIDG
KYCECDNTSCKRAGGKVCNGTWICCDCGDCICEPGWKGKACECTLEQALCYDHSDDALDS
TKPCNGNGECECGQCVCKLSQGGAKFRGQYCETKPLVVCDIHRDCIQCNGMAHWQLNDTE
CKTQCMGYNVTVVSGVGYYQYSGYSQECRFTDLSDDCTYQANFEEIDGIIMVEVEPDKVC
KTYANPVYIIIGIIAAIVGIGLAILLIWKLLTSIKDAREYKNFQKESQNPKWQGGENPIF
KKATSTFKNPMYSA
Nucleotide sequence
Length: 2,382
>Cisavi.CG.ENS81.R215.380006-398932.05665.t
ACCCAATGCACGGAGAGCAAAGCCAAGTCATGCAGCGATTGCATAAGTGTCCCAGGGTGT
GCATGGTGTGAAGATTCTGTAACTCGTAATTATAAATTATTTCCCAAGAACTATGCAAAC
AACCCGAATGTGTTGATTTCCCGATGTGATCTGCCTGAGAACCTCCTAACTGAAGGGGAA
AGATGTCCGGAAAATGCAATAATCAACCCGAAATCGAACCAATCTTCTCCTGCTTCTGGG
AACAGACCACATTCAAACGTCGGAGAATCAGCTGTTGGAACTGCCACGCAGATACGACCA
CAGATCATAAAAGCACAAGTCAGACCAGGTGATCCATTGAACATTGAGTTGTCATTCAAA
CAAGCTGAAGATTACCCAGTCGATCTATACTACCTCCTCGATCTCTCCAAATCCATGGAG
AACGATCTCAACTCCCTTCGAGCCCTCGGTCGCGAGCTTGGAATGAGCATGCAGAATATC
ACGAGGGATTTCCGACTTGGTTTCGGGTCTTTTATTGATAAGACAGTAATGCCTTACATC
TCCACTGTCCCTGCTAAGATAAAGAACCCGTGCAGTGATAAAGCTCCTTGCGTCCCAACA
TACAGCTTCCATAATGATCTACCATTGACGCCTGAAATTGAAGCGTTTGTGACATCAGTC
AACAACGTAACTCATTCATCCAACTTGGACAACCCTGAAGGCGGGCTCGACGCAATGATG
CAAGCTATTGTGTGCAAGGAAAGCATCAACTGGCGCAAAGACGCAACTCATCTCCTGGTA
TATTCCACCGACGCGAGTTTCCACTACGCAGGAGATGGGAAGTTGGGAGGAATCGTTCTT
CCTAATGATGGGAGGTGTTATCTTAACAGTAAGGGGCACTACTACAATGCTAACTACATG
GATTACCCATCAATCGGGCATTTAGTGAGAAAAATCACATCGCACAGTATTCAACCCATA
TTTGCCGTAACTTCGAATGTCATACAAACATACACAGTAAGTAATCCACTAACTAAACAC
ATACAGTCATTTTCATATCTCCCCAAAAAAACTTACATTTCTTCCAATATTTGTGCTCAA
TGGTCGATTCAACCCCAGGTACTTTTGGAGATTAAATCTCCAGCCGAGGTCTCTGTTTCA
TCACAAACGGCCCATTGTCTTGATGGATCGGTGCCGGGATTGCAATGTGATGGGGTGAAG
TTGGGAAATGTTGTAAAACAGAGTTGCTTGATTCAACCATTTCATTCCCAGGTCAATTTC
ACGTTCACCCTCTCCACGGAGAAATGCCTGACGTCGCCGGTGCAAGTGATTGTGTCGCCG
TACGGCTACAACGAGGTCGTCACTATTAACGTCGAGTCATTGTGTGATTGTCAGTGCGAG
GAGACAGAAGCGCCGACTAATAATTGCTCCGGCCACGGCAACTACCAGTGCGGATCCTGT
GTCTGTGAGTCGGGTTTCACGGGTCTGGATTGCTCATGTGACCAGAAGGATGTGCTGGGC
ATTGAATCCTACCTGGCTAACTGCACCGACCCCACGACGGGTGTCGTGTGCAATAGGGGC
GGCGAGTGTCAGTGCGGCTCGTGCATTTGCACACAATATGCAAACAAGAAAATTGATGGG
AAATACTGTGAATGTGACAACACTTCATGTAAACGTGCTGGAGGAAAAGTCTGTAATGGT
ACGTGGATATGTTGCGATTGCGGCGATTGTATATGCGAGCCTGGGTGGAAGGGCAAAGCG
TGCGAATGTACGTTGGAACAAGCGTTATGCTACGACCACAGTGATGATGCGTTGGATTCG
ACCAAACCTTGTAATGGCAATGGGGAATGTGAATGTGGACAATGCGTTTGCAAACTTAGT
CAGGGTGGAGCTAAGTTCCGCGGTCAATATTGCGAAACGAAACCGCTGGTTGTTTGCGAC
ATTCATCGAGATTGCATCCAATGCAACGGCATGGCACACTGGCAACTAAATGATACTGAG
TGCAAGACGCAGTGTATGGGGTATAATGTGACTGTGGTAAGTGGGGTTGGATATTATCAA
TACAGCGGGTACAGCCAGGAATGTCGATTCACTGATCTGTCTGACGATTGTACTTACCAA
GCTAACTTTGAGGAAATTGATGGGATTATTATGGTAGAAGTGGAGCCTGATAAAGTGTGC
AAGACATACGCGAACCCAGTATACATCATCATCGGAATTATCGCTGCTATCGTGGGAATT
GGGCTGGCCATCCTACTTATATGGAAGCTGCTAACCTCTATCAAGGACGCCAGGGAATAT
AAGAACTTCCAGAAAGAATCACAGAATCCTAAATGGCAGGGGGGCGAGAATCCAATATTC
AAGAAAGCAACCTCAACATTCAAAAACCCAATGTATTCGGCT
| PIRSF |
Integrin_bsu (IPR015812) - T[1-794] 6.7E-221 |
| SMART |
PSI (IPR016201) - T[2-63] 6.0E-4 |
| PANTHER |
Integrin_bsu (IPR015812) - T[2-793] 9.7E-211 |
| PRINTS |
Integrin_bsu (IPR015812) - T[7-23] 5.1E-72 - T[165-184] 5.1E-72 - T[197-216] 5.1E-72 - T[230-252] 5.1E-72 - T[257-272] 5.1E-72 - T[301-324] 5.1E-72 - T[604-617] 5.1E-72 - T[724-741] 5.1E-72 - T[741-759] 5.1E-72 - T[776-786] 5.1E-72 |
| SMART |
Integrin_bsu_VWA (IPR002369) - T[10-457] 3.4E-158 |
| Pfam |
Integrin_bsu_VWA (IPR002369) - T[122-340] 5.4E-95 |
| SUPERFAMILY |
vWFA_dom_sf (IPR036465) - T[122-335] 1.05E-67 |
| Gene3D |
vWFA_dom_sf (IPR036465) - T[124-364] 1.6E-119 |
| SUPERFAMILY |
Integrin_dom_sf (IPR032695) - T[381-461] 2.04E-7 |
| ProSitePatterns |
Integrin_bsu (IPR015812) - T[604-617] . |
| SMART |
Integrin_bsu_tail (IPR012896) - T[639-725] 6.1E-19 |
| Pfam |
Integrin_bsu_cyt_dom (IPR014836) - T[749-792] 7.8E-21 |
| SMART |
Integrin_bsu_cyt_dom (IPR014836) - T[749-794] 2.4E-21 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| ITB7_HUMAN | 34.875 % | 444 | 1.41E-144 |
| ITB6_HUMAN | 36.296 % | 457 | 1.26E-149 |
| ITB1_HUMAN | 38.631 % | 485 | 2.25E-160 |