- Transcript 'Cisavi.CG.ENS81.R215...' >
- Transcript 'Cisavi.CG.ENS81.R215...' >
- Transcript 'Cisavi.CG.ENS81.R215...' >
- Transcript 'Cisavi.CG.ENS81.R215...' >
- Transcript 'Cisavi.CG.ENS81.R215...'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R215.380006-398932.05666.t
Possible name(s)
ITGB1; ITGB6; ITGB7
Gene model
Location
R215 [381,631 / 398,932]
Amino acid sequence
Length: 790
>Cisavi.CG.ENS81.R215.380006-398932.05666.p
QCTESKAKSCSDCISVPGCAWCEDSNYANNPNVLISRCDLPENLLTEGERCPENAIINPK
SNQSSPGGLASGNRPHSNVGESAVGTATQIRPQIIKAQVRPGDPLNIELSFKQAEDYPVD
LYYLLDLSKSMENDLNSLRALGRELGMSMQNITRDFRLGFGSFIDKTVMPYISTVPAKIK
NPCSDKAPCVPTYSFHNDLPLTPEIEAFVTSVNNVTHSSNLDNPEGGLDAMMQAIVCKES
INWRKDATHLLVYSTDASFHYAGDGKLGGIVLPNDGRCYLNSKGHYYNANYMDYPSIGHL
VRKITSHSIQPIFAVTSNVIQTYTNLQKMIPKSVVGELSGDSSNIQLIQDAYNDTERIRW
APIHWVTGVACHPCYDVGTDSLGHRGGICLIQPFHSQVNFTFTLSTEKCLTSPVQVIVSP
YGYNEVVTINVESLCDCQCEETEAPTNNCSGHGNYQCGSCVCESGFTGLDCSCDQKDVLG
IESYLANCTDPTTGVVCNRGGECQCGSCICTQYANKKIDGKYCECDNTSCKRAGGKVCNG
TWICCDCGDCICEPGWKGKACECTLEQALCYDHSDDALDSTKPCNGNGECECGQCVCKLS
QGGAKFRGQYCETKPLVVCDIHRDCIQCAWHTGNYNDTECKTQCMGYNVTVVSGNKQMHR
LKHKKLINFYNVKLERVLCDIYSTSPFCPYYFDYVMPGQYGLSVLFVQISEFLCKTYANP
VYIIIGIIAAIVGIGLAILLIWKLLTSIKDAREYKNFQKESQNPKWQGGENPIFKKATST
FKNPMYSAGK
Nucleotide sequence
Length: 3,210
>Cisavi.CG.ENS81.R215.380006-398932.05666.t
CAATGCACGGAGAGCAAAGCCAAGTCATGCAGCGATTGCATAAGTGTCCCAGGGTGTGCA
TGGTGTGAAGATTCTAACTATGCAAACAACCCGAATGTGTTGATTTCCCGATGTGATCTG
CCTGAGAACCTCCTAACTGAAGGGGAAAGATGTCCGGAAAATGCAATAATCAACCCGAAA
TCGAACCAATCTTCTCCTGGTGGGTTGGCTTCTGGGAACAGACCACATTCAAACGTCGGA
GAATCAGCTGTTGGAACTGCCACGCAGATACGACCACAGATCATAAAAGCACAAGTCAGA
CCAGGTGATCCATTGAACATTGAGTTGTCATTCAAACAAGCTGAAGATTACCCAGTCGAT
CTATACTACCTCCTCGATCTCTCCAAATCCATGGAGAACGATCTCAACTCCCTTCGAGCC
CTCGGTCGCGAGCTTGGAATGAGCATGCAGAATATCACGAGGGATTTCCGACTTGGTTTC
GGGTCTTTTATTGATAAGACAGTAATGCCTTACATCTCCACTGTCCCTGCTAAGATAAAG
AACCCGTGCAGTGATAAAGCTCCTTGCGTCCCAACATACAGCTTCCATAATGATCTACCA
TTGACGCCTGAAATTGAAGCGTTTGTGACATCAGTCAACAACGTAACTCATTCATCCAAC
TTGGACAACCCTGAAGGCGGGCTCGACGCAATGATGCAAGCTATTGTGTGCAAGGAAAGC
ATCAACTGGCGCAAAGACGCAACTCATCTCCTGGTATATTCCACCGACGCGAGTTTCCAC
TACGCAGGAGATGGGAAGTTGGGAGGAATCGTTCTTCCTAATGATGGGAGGTGTTATCTT
AACAGTAAGGGGCACTACTACAATGCTAACTACATGGATTACCCATCAATCGGGCATTTA
GTGAGAAAAATCACATCGCACAGTATTCAACCCATATTTGCCGTAACTTCGAATGTCATA
CAAACATACACAAATCTACAAAAAATGATCCCGAAATCGGTGGTTGGAGAATTATCTGGT
GATTCATCAAACATTCAACTTATACAAGATGCATACAATGATACTGAAAGGATCAGGTGG
GCACCGATTCACTGGGTCACAGGGGTGGCATGTCACCCCTGTTATGATGTAGGCACCGAT
TCACTGGGTCACAGGGGTGGCATTTGCTTGATTCAACCATTTCATTCCCAGGTCAATTTC
ACGTTCACCCTCTCCACGGAGAAATGCCTGACGTCGCCGGTGCAAGTGATTGTGTCGCCG
TACGGCTACAACGAGGTCGTCACTATTAACGTCGAGTCATTGTGTGATTGTCAGTGCGAG
GAGACAGAAGCGCCGACTAATAATTGCTCCGGCCACGGCAACTACCAGTGCGGATCCTGT
GTCTGTGAGTCGGGTTTCACGGGTCTGGATTGCTCATGTGACCAGAAGGATGTGCTGGGC
ATTGAATCCTACCTGGCTAACTGCACCGACCCCACGACGGGTGTCGTGTGCAATAGGGGC
GGCGAGTGTCAGTGCGGCTCGTGCATTTGCACACAATATGCAAACAAGAAAATTGATGGG
AAATACTGTGAATGTGACAACACTTCATGTAAACGTGCTGGAGGAAAAGTCTGTAATGGT
ACGTGGATATGTTGCGATTGCGGCGATTGTATATGCGAGCCTGGGTGGAAGGGCAAAGCG
TGCGAATGTACGTTGGAACAAGCGTTATGCTACGACCACAGTGATGATGCGTTGGATTCG
ACCAAACCTTGTAATGGCAATGGGGAATGTGAATGTGGACAATGCGTTTGCAAACTTAGT
CAGGGTGGAGCTAAGTTCCGCGGTCAATATTGCGAAACGAAACCGCTGGTTGTTTGCGAC
ATTCATCGAGATTGCATCCAATGCGCATGGCACACTGGCAACTATAATGATACTGAGTGC
AAGACGCAGTGTATGGGGTATAATGTGACTGTGGTAAGTGGGAATAAACAAATGCATAGA
TTAAAGCACAAAAAACTTATTAATTTCTACAATGTAAAGCTGGAAAGGGTCCTATGTGAT
ATTTATAGTACATCTCCTTTTTGTCCATATTATTTTGACTATGTGATGCCAGGACAATAT
GGCCTTTCCGTCCTTTTTGTTCAAATTTCTGAATTTTTGTGCAAGACATACGCGAACCCA
GTATACATCATCATCGGAATTATCGCTGCTATCGTGGGAATTGGGCTGGCCATCCTACTT
ATATGGAAGCTGCTAACCTCTATCAAGGACGCCAGGGAATATAAGAACTTCCAGAAAGAA
TCACAGAATCCTAAATGGCAGGGGGGCGAGAATCCAATATTCAAGAAAGCAACCTCAACA
TTCAAAAACCCAATGTATTCGGCTGGGAAGTCTGGTGGAAATTTGTGATGATTCTACATA
TATATGTATACTACACCACATATCCGACCAAACTACTAAGGGAAATCCCCCAATTAACTA
CTTTGCGTGAGCATGCAGCATATGTATTAAACTACCGCAATACTTGTGGTACGAACCATT
CCTATATTAAGGTACTTTCTCTTTAAAACGCGATGAAATTTTGATGACGTGTTCATATTA
AGTGTTCTTTATGCCTCCTGTTTTGCTACTGATCATCTAATCACTAATAATTAATCGTGT
TTTAAAACCCGGTACAGTTTTTTTACCAATTTGTTTGTTCACATACGGTGCTCTGCGTAT
TACTAAATTGCTTTGCTCAAATCGTCGAAACTATACTTCTTATCCACGCATATAATAGGC
AATTTCTACCGAACTTTGCGCTAATCACATTTTTTCTTTGCTTTTTACTTTTCTACGTCT
GTAAAAATCAATTTCTGTAATTGCCAAGAATATTTAACCCCTGCATAACCGCTGTATTAA
ACTATGTCGCATGCTGTTTCTTAGCTCAGCGTGCTTTAATATAACACAACGACAAAAACT
TAAATGAATTTACCGATTTTCCCCCTTTTTTTGCTTTCGTTTTAATCAATTACAAAATCT
GAATTTGGTACATCATAAAGTTATCTTTGTCAAAAGTGCAAGAATGATTTTTTCTACTTT
TAATTCCTTAGTATTCACTTTGCAAGGGAATTTAACGTCAAATATGTAATTATTTACAAA
AATCCAATAAATTTTCGACTATTTTTTTCCGATTGAAAACTAAAGCGTTTCCACTGCCTT
TCACAGACACCTTAGCACAATAATTATTAT
| PIRSF |
Integrin_bsu (IPR015812) - T[1-790] 1.7E-229 |
| SMART |
PSI (IPR016201) - T[1-52] 6.7E-4 |
| Pfam |
Integrin_beta_N (IPR033760) - T[2-52] 1.1E-9 |
| PANTHER |
Integrin_bsu (IPR015812) - T[2-788] 4.9E-219 |
| PRINTS |
Integrin_bsu (IPR015812) - T[6-22] 1.3E-92 - T[89-102] 1.3E-92 - T[117-135] 1.3E-92 - T[157-176] 1.3E-92 - T[189-208] 1.3E-92 - T[222-244] 1.3E-92 - T[249-264] 1.3E-92 - T[293-316] 1.3E-92 - T[329-353] 1.3E-92 - T[584-597] 1.3E-92 - T[718-735] 1.3E-92 - T[735-753] 1.3E-92 - T[770-780] 1.3E-92 |
| SMART |
Integrin_bsu_VWA (IPR002369) - T[9-437] 3.4E-175 |
| SUPERFAMILY |
vWFA_dom_sf (IPR036465) - T[114-354] 3.18E-75 |
| Pfam |
Integrin_bsu_VWA (IPR002369) - T[114-354] 4.6E-104 |
| Gene3D |
vWFA_dom_sf (IPR036465) - T[116-355] 9.8E-128 |
| SUPERFAMILY |
Integrin_dom_sf (IPR032695) - T[385-441] 4.76E-8 |
| ProSitePatterns |
Integrin_bsu (IPR015812) - T[584-597] . |
| SMART |
Integrin_bsu_tail (IPR012896) - T[619-719] 0.005 |
| Pfam |
Integrin_bsu_cyt_dom (IPR014836) - T[743-786] 7.7E-21 |
| SMART |
Integrin_bsu_cyt_dom (IPR014836) - T[743-789] 9.8E-23 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| ITB7_HUMAN | 37.312 % | 478 | 9.34E-158 |
| ITB6_HUMAN | 36.822 % | 474 | 3.01E-156 |
| ITB1_HUMAN | 39.7 % | 522 | 8.6E-175 |