- Transcript 'Cisavi.CG.ENS81.R215...'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R215.380006-398932.05667.t
Possible name(s)
ITGB1; ITGB6; ITGB7
Gene model
Location
R215 [381,631 / 398,092]
Amino acid sequence
Length: 780
>Cisavi.CG.ENS81.R215.380006-398932.05667.p
QCTESKAKSCSDCISVPGCAWCEDSNYANNPNVLISRCDLPENLLTEGERCPENAIINPK
SNQSSPGGLASGNRPHSNVGESAVGTATQIRPQIIKAQVRPGDPLNIELSFKQAEDYPVD
LYYLLDLSKSMENDLNSLRALGRELGMSMQNITRDFRLGFGSFIDKTVMPYISTVPAKIK
NPCSDKAPCVPTYSFHNDLPLTPEIEAFVTSVNNVTHSSNLDNPEGGLDAMMQAIVCKES
INWRKDATHLLVYSTDASFHYAGDGKLGGIVLPNDGRCYLNSKGHYYNANYMDYPSIGHL
VRKITSHSIQPIFAVTSNVIQTYTNLQKMIPKSVVGELSGDSSNIQLIQDAYNDTERIRW
APIHWVTGVACHPCYDVGTDSLGHRGGICLIQPFHSQVNFTFTLSTEKCLTSPVQVIVSP
YGYNEVVTINVESLCDCQCEETEAPTNNCSGHGNYQCGSCVCESGFTGLDCSCDQKDVLG
IESYLANCTDPTTGVVCNRGGECQCGSCICTQYANKKIDGKYCECDNTSCKRAGGKVCNG
TWICCDCGDCICEPGWKGKACECTLEQALCYDHSDDALDSTKPCNGNGECECGQCVCKLS
QGGAKFRGQYCETKPLVVCDIHRDCIQCAWHTGNYNDTECKTQCMGYNVTVVNDRRLSIQ
RVQPGMVLCDIYSTSPFCPYYFDYVMPGQYGLSVLFVQISEFLCKTYANPVYIIIGIIAA
IVGIGLAILLIWKLLTSIKDAREYKNFQKESQNPKWQGGENPIFKKATSTFKNPMYSAGK
Nucleotide sequence
Length: 2,340
>Cisavi.CG.ENS81.R215.380006-398932.05667.t
CAATGCACGGAGAGCAAAGCCAAGTCATGCAGCGATTGCATAAGTGTCCCAGGGTGTGCA
TGGTGTGAAGATTCTAACTATGCAAACAACCCGAATGTGTTGATTTCCCGATGTGATCTG
CCTGAGAACCTCCTAACTGAAGGGGAAAGATGTCCGGAAAATGCAATAATCAACCCGAAA
TCGAACCAATCTTCTCCTGGTGGGTTGGCTTCTGGGAACAGACCACATTCAAACGTCGGA
GAATCAGCTGTTGGAACTGCCACGCAGATACGACCACAGATCATAAAAGCACAAGTCAGA
CCAGGTGATCCATTGAACATTGAGTTGTCATTCAAACAAGCTGAAGATTACCCAGTCGAT
CTATACTACCTCCTCGATCTCTCCAAATCCATGGAGAACGATCTCAACTCCCTTCGAGCC
CTCGGTCGCGAGCTTGGAATGAGCATGCAGAATATCACGAGGGATTTCCGACTTGGTTTC
GGGTCTTTTATTGATAAGACAGTAATGCCTTACATCTCCACTGTCCCTGCTAAGATAAAG
AACCCGTGCAGTGATAAAGCTCCTTGCGTCCCAACATACAGCTTCCATAATGATCTACCA
TTGACGCCTGAAATTGAAGCGTTTGTGACATCAGTCAACAACGTAACTCATTCATCCAAC
TTGGACAACCCTGAAGGCGGGCTCGACGCAATGATGCAAGCTATTGTGTGCAAGGAAAGC
ATCAACTGGCGCAAAGACGCAACTCATCTCCTGGTATATTCCACCGACGCGAGTTTCCAC
TACGCAGGAGATGGGAAGTTGGGAGGAATCGTTCTTCCTAATGATGGGAGGTGTTATCTT
AACAGTAAGGGGCACTACTACAATGCTAACTACATGGATTACCCATCAATCGGGCATTTA
GTGAGAAAAATCACATCGCACAGTATTCAACCCATATTTGCCGTAACTTCGAATGTCATA
CAAACATACACAAATCTACAAAAAATGATCCCGAAATCGGTGGTTGGAGAATTATCTGGT
GATTCATCAAACATTCAACTTATACAAGATGCATACAATGATACTGAAAGGATCAGGTGG
GCACCGATTCACTGGGTCACAGGGGTGGCATGTCACCCCTGTTATGATGTAGGCACCGAT
TCACTGGGTCACAGGGGTGGCATTTGCTTGATTCAACCATTTCATTCCCAGGTCAATTTC
ACGTTCACCCTCTCCACGGAGAAATGCCTGACGTCGCCGGTGCAAGTGATTGTGTCGCCG
TACGGCTACAACGAGGTCGTCACTATTAACGTCGAGTCATTGTGTGATTGTCAGTGCGAG
GAGACAGAAGCGCCGACTAATAATTGCTCCGGCCACGGCAACTACCAGTGCGGATCCTGT
GTCTGTGAGTCGGGTTTCACGGGTCTGGATTGCTCATGTGACCAGAAGGATGTGCTGGGC
ATTGAATCCTACCTGGCTAACTGCACCGACCCCACGACGGGTGTCGTGTGCAATAGGGGC
GGCGAGTGTCAGTGCGGCTCGTGCATTTGCACACAATATGCAAACAAGAAAATTGATGGG
AAATACTGTGAATGTGACAACACTTCATGTAAACGTGCTGGAGGAAAAGTCTGTAATGGT
ACGTGGATATGTTGCGATTGCGGCGATTGTATATGCGAGCCTGGGTGGAAGGGCAAAGCG
TGCGAATGTACGTTGGAACAAGCGTTATGCTACGACCACAGTGATGATGCGTTGGATTCG
ACCAAACCTTGTAATGGCAATGGGGAATGTGAATGTGGACAATGCGTTTGCAAACTTAGT
CAGGGTGGAGCTAAGTTCCGCGGTCAATATTGCGAAACGAAACCGCTGGTTGTTTGCGAC
ATTCATCGAGATTGCATCCAATGCGCATGGCACACTGGCAACTATAATGATACTGAGTGC
AAGACGCAGTGTATGGGGTATAATGTGACTGTGGTAAATGACAGAAGATTATCAATACAG
CGGGTACAGCCAGGAATGGTCCTATGTGATATTTATAGTACATCTCCTTTTTGTCCATAT
TATTTTGACTATGTGATGCCAGGACAATATGGCCTTTCCGTCCTTTTTGTTCAAATTTCT
GAATTTTTGTGCAAGACATACGCGAACCCAGTATACATCATCATCGGAATTATCGCTGCT
ATCGTGGGAATTGGGCTGGCCATCCTACTTATATGGAAGCTGCTAACCTCTATCAAGGAC
GCCAGGGAATATAAGAACTTCCAGAAAGAATCACAGAATCCTAAATGGCAGGGGGGCGAG
AATCCAATATTCAAGAAAGCAACCTCAACATTCAAAAACCCAATGTATTCGGCTGGGAAG
| PIRSF |
Integrin_bsu (IPR015812) - T[1-780] 8.8E-231 |
| SMART |
PSI (IPR016201) - T[1-52] 6.7E-4 |
| Pfam |
Integrin_beta_N (IPR033760) - T[2-52] 1.1E-9 |
| PANTHER |
Integrin_bsu (IPR015812) - T[2-778] 2.1E-220 |
| PRINTS |
Integrin_bsu (IPR015812) - T[6-22] 1.1E-92 - T[89-102] 1.1E-92 - T[117-135] 1.1E-92 - T[157-176] 1.1E-92 - T[189-208] 1.1E-92 - T[222-244] 1.1E-92 - T[249-264] 1.1E-92 - T[293-316] 1.1E-92 - T[329-353] 1.1E-92 - T[584-597] 1.1E-92 - T[708-725] 1.1E-92 - T[725-743] 1.1E-92 - T[760-770] 1.1E-92 |
| SMART |
Integrin_bsu_VWA (IPR002369) - T[9-437] 3.4E-175 |
| Pfam |
Integrin_bsu_VWA (IPR002369) - T[114-354] 4.5E-104 |
| SUPERFAMILY |
vWFA_dom_sf (IPR036465) - T[114-354] 3.11E-75 |
| Gene3D |
vWFA_dom_sf (IPR036465) - T[116-355] 9.5E-128 |
| SUPERFAMILY |
Integrin_dom_sf (IPR032695) - T[385-441] 4.71E-8 |
| ProSitePatterns |
Integrin_bsu (IPR015812) - T[584-597] . |
| SUPERFAMILY |
Integrin_bsu_tail_dom_sf (IPR036349) - T[618-692] 2.09E-5 |
| SMART |
Integrin_bsu_tail (IPR012896) - T[619-709] 3.3E-5 |
| SMART |
Integrin_bsu_cyt_dom (IPR014836) - T[733-779] 9.8E-23 |
| Pfam |
Integrin_bsu_cyt_dom (IPR014836) - T[733-776] 7.6E-21 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| ITB7_HUMAN | 37.06 % | 479 | 1.89E-158 |
| ITB6_HUMAN | 37.292 % | 484 | 3.39E-160 |
| ITB1_HUMAN | 40.708 % | 532 | 7.92E-179 |