- Transcript 'Cisavi.CG.ENS81.R215...' >
- Transcript 'Cisavi.CG.ENS81.R215...' >
- Transcript 'Boschl.CG.Botznik201...' >
- Transcript 'Cisavi.CG.ENS81.R215...'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R215.380006-398932.05669.t
Possible name(s)
ITGB1; ITGB6; ITGB7
Gene model
Location
R215 [381,634 / 397,148]
Amino acid sequence
Length: 752
>Cisavi.CG.ENS81.R215.380006-398932.05669.p
CTESKAKSCSDCISVPGCAWCEDSNYANNPNVLISRCDLPENLLTEGERCPENAIINPKS
NQSSPASGNRPHSNVGESAVGTATQIRPQIIKAQVRPGDPLNIELSFKQAEDYPVDLYYL
LDLSKSMENDLNSLRALGRELGMSMQNITRDFRLGFGSFIDKTVMPYISTVPAKIKNPCS
DKAPCVPTYSFHNDLPLTPEIEAFVTSVNNVTHSSNLDNPEGGLDAMMQAIVCKESINWR
KDATHLLVYSTDASFHYAGDGKLGGIVLPNDGRCYLNSKGHYYNANYMDYPSIGHLVRKI
TSHSIQPIFAVTSNVIQTYTNLQKMIPKSSFSYLPKKTYISSNICAQWSIQPQVLLEIKS
PAEVSVSSQTAHCLDGSVPGLQCDGVKLGNVVNFTFTLSTEKCLTSPVQVIVSPYGYNEV
VTINVESLCDCQCEETEAPTNNCSGHGNYQCGSCVCESGFTGLDCSCDQKDVLGIESYLA
NCTDPTTGVVCNRGGECQCGSCICTQYANKKIDGKYCECDNTSCKRAGGKVCNGMGKCDC
GDCICEPGWKGKACECTLEQALCYDHSDDALDSTKPCNGNGECECGQCVCKLSQGGAKFR
GQYCETKPLVVCDIHRDCIQCAWHTGNYNDTECKTQCMGYNVTVVSGVGCLYKFWLERVL
CDIYSTSPFCPYYFDYVMPGQYGLSVLFVQISEFLCKTYANPVYIIIGIIAAIVGIGLAI
LLIWKLLTSIKDAREYKNFQKESQNPKWQGVS
Nucleotide sequence
Length: 2,256
>Cisavi.CG.ENS81.R215.380006-398932.05669.t
TGCACGGAGAGCAAAGCCAAGTCATGCAGCGATTGCATAAGTGTCCCAGGGTGTGCATGG
TGTGAAGATTCTAACTATGCAAACAACCCGAATGTGTTGATTTCCCGATGTGATCTGCCT
GAGAACCTCCTAACTGAAGGGGAAAGATGTCCGGAAAATGCAATAATCAACCCGAAATCG
AACCAATCTTCTCCTGCTTCTGGGAACAGACCACATTCAAACGTCGGAGAATCAGCTGTT
GGAACTGCCACGCAGATACGACCACAGATCATAAAAGCACAAGTCAGACCAGGTGATCCA
TTGAACATTGAGTTGTCATTCAAACAAGCTGAAGATTACCCAGTCGATCTATACTACCTC
CTCGATCTCTCCAAATCCATGGAGAACGATCTCAACTCCCTTCGAGCCCTCGGTCGCGAG
CTTGGAATGAGCATGCAGAATATCACGAGGGATTTCCGACTTGGTTTCGGGTCTTTTATT
GATAAGACAGTAATGCCTTACATCTCCACTGTCCCTGCTAAGATAAAGAACCCGTGCAGT
GATAAAGCTCCTTGCGTCCCAACATACAGCTTCCATAATGATCTACCATTGACGCCTGAA
ATTGAAGCGTTTGTGACATCAGTCAACAACGTAACTCATTCATCCAACTTGGACAACCCT
GAAGGCGGGCTCGACGCAATGATGCAAGCTATTGTGTGCAAGGAAAGCATCAACTGGCGC
AAAGACGCAACTCATCTCCTGGTATATTCCACCGACGCGAGTTTCCACTACGCAGGAGAT
GGGAAGTTGGGAGGAATCGTTCTTCCTAATGATGGGAGGTGTTATCTTAACAGTAAGGGG
CACTACTACAATGCTAACTACATGGATTACCCATCAATCGGGCATTTAGTGAGAAAAATC
ACATCGCACAGTATTCAACCCATATTTGCCGTAACTTCGAATGTCATACAAACATACACA
AATCTACAAAAAATGATCCCGAAATCGTCATTTTCATATCTCCCCAAAAAAACTTACATT
TCTTCCAATATTTGTGCTCAATGGTCGATTCAACCCCAGGTACTTTTGGAGATTAAATCT
CCAGCCGAGGTCTCTGTTTCATCACAAACGGCCCATTGTCTTGATGGATCGGTGCCGGGA
TTGCAATGTGATGGGGTGAAGTTGGGAAATGTTGTCAATTTCACGTTCACCCTCTCCACG
GAGAAATGCCTGACGTCGCCGGTGCAAGTGATTGTGTCGCCGTACGGCTACAACGAGGTC
GTCACTATTAACGTCGAGTCATTGTGTGATTGTCAGTGCGAGGAGACAGAAGCGCCGACT
AATAATTGCTCCGGCCACGGCAACTACCAGTGCGGATCCTGTGTCTGTGAGTCGGGTTTC
ACGGGTCTGGATTGCTCATGTGACCAGAAGGATGTGCTGGGCATTGAATCCTACCTGGCT
AACTGCACCGACCCCACGACGGGTGTCGTGTGCAATAGGGGCGGCGAGTGTCAGTGCGGC
TCGTGCATTTGCACACAATATGCAAACAAGAAAATTGATGGGAAATACTGTGAATGTGAC
AACACTTCATGTAAACGTGCTGGAGGAAAAGTCTGTAATGGCATGGGCAAGTGCGATTGC
GGCGATTGTATATGCGAGCCTGGGTGGAAGGGCAAAGCGTGCGAATGTACGTTGGAACAA
GCGTTATGCTACGACCACAGTGATGATGCGTTGGATTCGACCAAACCTTGTAATGGCAAT
GGGGAATGTGAATGTGGACAATGCGTTTGCAAACTTAGTCAGGGTGGAGCTAAGTTCCGC
GGTCAATATTGCGAAACGAAACCGCTGGTTGTTTGCGACATTCATCGAGATTGCATCCAA
TGCGCATGGCACACTGGCAACTATAATGATACTGAGTGCAAGACGCAGTGTATGGGGTAT
AATGTGACTGTGGTAAGTGGGGTTGGATGTTTATATAAATTTTGGCTGGAAAGGGTCCTA
TGTGATATTTATAGTACATCTCCTTTTTGTCCATATTATTTTGACTATGTGATGCCAGGA
CAATATGGCCTTTCCGTCCTTTTTGTTCAAATTTCTGAATTTTTGTGCAAGACATACGCG
AACCCAGTATACATCATCATCGGAATTATCGCTGCTATCGTGGGAATTGGGCTGGCCATC
CTACTTATATGGAAGCTGCTAACCTCTATCAAGGACGCCAGGGAATATAAGAACTTCCAG
AAAGAATCACAGAATCCTAAATGGCAGGGGGTGAGT
| Pfam |
Integrin_beta_N (IPR033760) - T[1-51] 1.4E-9 |
| PANTHER |
Integrin_bsu (IPR015812) - T[1-744] 4.5E-216 |
| PIRSF |
Integrin_bsu (IPR015812) - T[1-752] 9.2E-221 |
| PRINTS |
Integrin_bsu (IPR015812) - T[5-21] 4.5E-82 - T[85-98] 4.5E-82 - T[113-131] 4.5E-82 - T[153-172] 4.5E-82 - T[185-204] 4.5E-82 - T[218-240] 4.5E-82 - T[245-260] 4.5E-82 - T[289-312] 4.5E-82 - T[577-590] 4.5E-82 - T[700-717] 4.5E-82 - T[717-735] 4.5E-82 |
| SMART |
Integrin_bsu_VWA (IPR002369) - T[8-431] 1.9E-178 |
| Pfam |
Integrin_bsu_VWA (IPR002369) - T[110-338] 1.5E-98 |
| SUPERFAMILY |
vWFA_dom_sf (IPR036465) - T[110-336] 4.77E-71 |
| Gene3D |
vWFA_dom_sf (IPR036465) - T[112-351] 2.1E-126 |
| SUPERFAMILY |
Integrin_dom_sf (IPR032695) - T[368-435] 2.25E-12 |
| ProSitePatterns |
Integrin_bsu (IPR015812) - T[532-545] . - T[577-590] . |
| SMART |
Integrin_bsu_tail (IPR012896) - T[612-701] 0.0037 |
| Pfam |
Integrin_bsu_cyt_dom (IPR014836) - T[725-749] 2.6E-7 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| ITB6_HUMAN | 37.368 % | 469 | 6.47E-155 |
| ITB5_HUMAN | 37.581 % | 468 | 1.9E-154 |
| ITB1_HUMAN | 39.767 % | 494 | 2.01E-164 |