- Transcript 'Moocci.CG.ELv1_2.S64...' >
- Transcript 'KH2012:KH.C8.374.v1....' >
- Transcript 'Cisavi.CG.ENS81.R254...'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R254.338579-343698.18461.t
Possible name(s)
SNRNP40; WDR5; WDR55
Gene model
Location
R254 [338,578 / 343,698]
Amino acid sequence
Length: 392
>Cisavi.CG.ENS81.R254.338579-343698.18461.p
MAEDSDYSASDNDDEAENLEDKVPRPKQIKGVTDFVDISFHPSAFYTLVTANMNGYVRMY
NCTPGKDCEQKAKVRVSKKPCRSVAFSYDGEDVICLTKDHSMHFVSTTTGSVKRRIKETH
QASPYCLSVIDKNLLATGDDDGTVKVWDLRKGNGAVMTSDDKFADYVSDIAVDAKRRLIF
SVSGDGTMATFNVRQRKFIVQSQNEETDLLCVEVMKDNNKVVVGTADGPILLYNWDEFAA
PSDRFPGHPGPVDCITKVSEDVVCTASADGFIRAVHVLPNRFLGVVGDHHGLPVEKVRAT
PDGKFLASISHDNLIKFWSVGHLKDVQVCPRAKAIKGNKNEKMSKSGVGHGRMEFFADLD
NDIDTSVFASSVTSSDNDSDSDDSTFCNANER
Nucleotide sequence
Length: 1,238
>Cisavi.CG.ENS81.R254.338579-343698.18461.t
TTTACTTGTCAAAAATCTAACTGGTCAGCTACCGTTATTATTTTCATAATGGCTGAAGAC
TCGGACTATTCAGCATCTGATAATGATGATGAAGCTGAAAATTTAGAAGATAAAGTTCCA
AGACCGAAACAGATTAAAGGCGTGACAGATTTTGTCGATATTTCGTTTCACCCTTCAGCT
TTCTACACCCTGGTCACTGCAAATATGAATGGATATGTCAGAATGTATAATTGTACCCCT
GGCAAGGATTGTGAACAGAAAGCAAAAGTGAGAGTAAGCAAAAAGCCTTGCAGGAGTGTT
GCCTTTTCCTATGATGGTGAAGATGTCATTTGTCTTACAAAGGACCATTCCATGCATTTT
GTGTCAACTACCACAGGCAGTGTCAAACGGCGGATAAAGGAAACTCATCAAGCTTCACCA
TATTGTCTATCTGTCATCGACAAAAATCTTCTTGCCACTGGCGACGACGATGGTACTGTG
AAGGTTTGGGACTTGCGTAAAGGCAACGGCGCTGTCATGACGTCAGACGACAAGTTCGCC
GATTACGTCAGCGACATAGCGGTAGACGCCAAACGGCGGTTGATATTCTCTGTCTCCGGA
GACGGTACCATGGCCACGTTCAACGTTCGGCAGAGGAAATTCATTGTTCAATCTCAGAAC
GAAGAAACCGACCTGCTTTGTGTAGAAGTCATGAAAGACAACAATAAAGTGGTGGTTGGT
ACGGCAGACGGACCGATTCTACTGTACAACTGGGATGAGTTTGCCGCCCCTAGTGACCGG
TTCCCTGGCCACCCTGGCCCAGTGGACTGTATTACGAAGGTGTCCGAGGATGTTGTCTGT
ACTGCGTCTGCAGACGGATTTATAAGAGCAGTTCATGTGTTGCCGAATCGATTTCTAGGC
GTCGTCGGCGATCACCATGGATTGCCTGTTGAAAAAGTGCGGGCAACCCCGGATGGGAAG
TTTCTCGCAAGCATCTCGCATGATAACTTGATAAAGTTTTGGAGTGTCGGGCACCTGAAA
GATGTGCAGGTGTGTCCACGAGCGAAGGCGATCAAAGGGAACAAAAACGAAAAAATGTCA
AAGAGCGGGGTGGGCCACGGTCGAATGGAATTTTTTGCCGATCTTGACAACGATATCGAC
ACCAGCGTTTTCGCCTCTTCGGTGACATCTAGCGACAACGATTCTGATAGTGACGATTCC
ACTTTTTGTAATGCAAATGAGAGATAACAACGAATGAT
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[2-202] 5.7E-24 - T[203-388] 7.5E-17 |
| SMART |
WD40_repeat (IPR001680) - T[22-61] 34.0 - T[67-106] 45.0 - T[109-148] 3.1E-5 - T[153-192] 22.0 - T[195-234] 78.0 - T[238-276] 17.0 - T[279-319] 0.014 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[37-321] 2.04E-48 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[74-328] 20.909 |
| Pfam |
WD40_repeat (IPR001680) - T[131-148] 0.0041 - T[289-319] 0.25 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[131-157] 10.676 - T[287-328] 9.673 |
| ProSitePatterns |
WD40_repeat_CS (IPR019775) - T[135-149] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| WDR55_HUMAN | 36.994 % | 232 | 4.87E-73 |