- Transcript 'KH2012:KH.C3.483.v1....' >
- Transcript 'Cisavi.CG.ENS81.R27....'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R27.891395-899932.16189.t
Possible name(s)
HNF4A; HNF4G; RXRA
Gene model
Location
R27 [891,394 / 899,932]
Amino acid sequence
Length: 511
>Cisavi.CG.ENS81.R27.891395-899932.16189.p
MMEADLHTNYGLDMGNPEQLYQDMIPNVQDSPTSLHGNGPEIGAFSFCMPNAMSPGHPIN
NSSAVEVPAHPVSPETMGMGSGMVNGHGSDHESNASLAGEGDGLRTFCSICGDRATGKHY
GASSCDGCKGFFRRSVRKNHQYQCRFSRNCTVDKDKRNQCRYCRLRKCFRAGMKREAVQN
ERDRISTKKSAIDESASLSVSTLLNADNMSKQPTAGSAGDVPDTVPVENKKIASVNDVCD
SIRQQLLVLVEWAKYIPAFSELPLDDRVALLRAHAGENLLMGAAKRSLPYKDVLLLGNDF
IIPRHCHEVEISGVAVRVLDELVRPLADLSLDANEFACLKAIVFFDPDARGLHNPSKIKQ
MRSQVMCNLEDYINDRQYDSRGRFGEILLLLPTLQSITWQMIEQIQFVRIFGVARVDNLL
QEMLLGSANETQSMIPASVAQCAAMGSVSPAHNPLTNGMIPCSPGLMTMGDKPPNVSPTH
PMSPTAQGNLQNTMGMEVDNPVLLQPKSEIV
Nucleotide sequence
Length: 1,749
>Cisavi.CG.ENS81.R27.891395-899932.16189.t
GTAGAGTTACACTTGAAACCACTGTGATTAAGAAAAGGAATAGAAACAAAGCTGTAAAAT
GATGGAGGCCGACTTGCATACAAATTACGGCCTGGATATGGGAAATCCGGAGCAACTATA
CCAAGATATGATACCAAATGTTCAAGATTCACCCACGTCATTGCACGGAAATGGGCCGGA
GATCGGTGCGTTCAGTTTTTGTATGCCGAACGCCATGAGTCCTGGGCATCCTATTAACAA
CAGCTCGGCAGTGGAGGTGCCCGCCCACCCGGTATCCCCAGAAACGATGGGTATGGGTAG
CGGAATGGTCAACGGCCACGGCAGCGACCACGAATCAAACGCCTCGTTGGCAGGGGAGGG
GGACGGCTTGCGAACTTTTTGTTCGATATGCGGTGATCGGGCGACGGGAAAGCATTACGG
AGCCAGCAGTTGTGATGGATGCAAAGGTTTCTTCCGACGCAGTGTGAGGAAAAACCACCA
ATACCAGTGCAGATTCAGCCGAAATTGTACGGTAGATAAGGATAAGAGAAACCAATGTAG
ATATTGTCGCTTAAGGAAGTGCTTCAGAGCCGGGATGAAAAGAGAAGCTGTTCAGAACGA
ACGGGACAGGATAAGTACAAAGAAATCAGCAATTGACGAATCAGCTTCGTTATCGGTGTC
CACCTTATTAAACGCAGACAACATGTCAAAACAGCCCACTGCCGGATCGGCGGGCGACGT
CCCAGACACAGTGCCGGTTGAAAATAAGAAGATAGCTTCAGTTAACGATGTTTGTGATTC
AATACGCCAGCAGTTGCTTGTGTTGGTTGAATGGGCCAAATATATCCCGGCTTTCTCGGA
GCTTCCTCTTGATGATAGGGTGGCGCTCTTGAGGGCACACGCCGGGGAGAATTTACTGAT
GGGGGCAGCGAAGCGGTCGTTGCCATATAAAGATGTTCTTCTGCTGGGCAATGATTTCAT
TATCCCTAGGCATTGCCACGAGGTTGAAATATCAGGAGTTGCGGTTCGAGTCTTGGACGA
ACTGGTTCGACCTTTAGCTGACCTCTCTCTTGACGCCAATGAATTCGCTTGTCTCAAAGC
AATCGTCTTTTTTGATCCCGACGCACGCGGTTTGCACAACCCGAGTAAAATCAAGCAGAT
GAGATCACAAGTAATGTGCAATTTGGAAGATTACATCAATGATCGGCAGTACGACTCCCG
CGGGAGGTTCGGTGAGATATTACTCCTCCTGCCCACCCTGCAGAGCATAACGTGGCAAAT
GATCGAACAAATCCAGTTCGTCCGGATATTCGGTGTCGCTCGTGTGGATAATCTACTTCA
GGAAATGCTACTTGGCAGTGCAAACGAAACGCAATCCATGATACCTGCCTCGGTGGCCCA
ATGTGCCGCCATGGGCTCCGTGAGCCCAGCGCACAACCCACTAACCAACGGAATGATTCC
GTGCTCCCCGGGTTTGATGACCATGGGTGATAAGCCGCCCAATGTGTCCCCCACACACCC
CATGTCCCCCACAGCACAGGGCAACCTGCAGAATACCATGGGAATGGAGGTCGACAACCC
TGTGCTTCTGCAACCGAAGTCGGAGATTGTATGAGCTATGCAAGGCGAGGACTGTGAACA
GCGGTGGTTCACCATGCAATCCAAACAATTCGGCCACTTATTCACGCAGTTTTAATGTGT
GGAAACCGCGGTTGACCTTTTATTCAATTGTAAGAAACCACAATTACGCTCATGCGAAAT
TACTGAATT
| Gene3D |
Znf_NHR/GATA (IPR013088) - T[100-188] 2.4E-33 |
| SMART |
Znf_hrmn_rcpt (IPR001628) - T[105-176] 1.6E-37 |
| ProSiteProfiles |
Znf_hrmn_rcpt (IPR001628) - T[105-180] 21.094 |
| Pfam |
Znf_hrmn_rcpt (IPR001628) - T[107-175] 3.3E-29 |
| PRINTS |
Znf_hrmn_rcpt (IPR001628) - T[108-124] 5.9E-18 - T[124-139] 5.9E-18 - T[157-165] 5.9E-18 - T[165-173] 5.9E-18 |
| ProSitePatterns |
Znf_hrmn_rcpt (IPR001628) - T[108-134] . |
| PRINTS |
Nuclear_hrmn_rcpt (IPR001723) - T[169-179] 2.3E-24 - T[241-262] 2.3E-24 - T[262-278] 2.3E-24 - T[329-344] 2.3E-24 - T[386-403] 2.3E-24 |
| SUPERFAMILY |
NHR_like_dom_sf (IPR035500) - T[174-424] 3.54E-62 |
| PRINTS |
Retinoid-X_rcpt/HNF4 (IPR000003) - T[176-189] 3.9E-6 - T[317-335] 3.9E-6 - T[358-377] 3.9E-6 |
| Pfam |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[225-411] 2.4E-38 |
| SMART |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[240-398] 4.0E-45 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| RXRA_HUMAN | 37.104 % | 275 | 6.85E-87 |
| HNF4A_HUMAN | 66.76 % | 498 | 6.27E-174 |
| HNF4G_HUMAN | 63.846 % | 494 | 1.55E-173 |