Aniseed - Transcript Card

Sequences

Amino acid sequence

Length: 647

>Cisavi.CG.ENS81.R283.275384-287631.05271.p
MNSSGTATSYPMASLYVGDLHLDVTEAMLYEKFSAAGPVLSIRVCRDVITRRSLGYAFVN
FQQPADAERALDTMNYDPIKGRPIRIMWSLRDPYLRKSGVGNIFIKNLDKSIDNKALYDT
FSAFGNIFSCKVMLPDQNNGSKGYGFVHFETDEAGSRAIEKVNGMLLNDKKVYVGKFLTR
SERVKKMGERVRQFTNVYIKNFSDKLDEKALQVMFEQHGVVKSVAVMRDRDGNSRGFGFV
NMETHEDAEAACEALNGIQVEGTNDTLYVGRAQKKQERQQELRGQYEAQKQERIQRFQGV
NLYVKNLDDNVTDDELREAFSTYGTITSVKIMSDGKHSRGFGFVCLSSPEEATKAVTEMN
GRIVGTKQLYVALAKRREDRKAHLTAYNGKKLLNKFTPVHLTPPNQIMGQPFQTAGGASG
YFMPFQGAQRTYMQSQIIRATPRWQHNPRKLSGINQLMAGDMRTVGPRAPAAPAIRPMTT
PVGDRGVIHPQHQMMHQQAMPQVTTINTPAFKYNQSVRNPTMAGYPQSGKPQSQQQTDPA
MQQAVHVQGQEPLTSSMLAAVQPQEQKQMLGERLYPLIEQSHPDLASKITGMLLEIDNSE
LLHMLESRESLKAKVEEAVAVLQAHQEKVAAATRRPANTTPAAAATE

Nucleotide sequence

Length: 1,945

>Cisavi.CG.ENS81.R283.275384-287631.05271.t
ATGAACAGCTCGGGAACAGCAACCAGTTATCCAATGGCTTCACTTTACGTGGGGGATTTG
CATCTTGACGTGACGGAGGCCATGTTGTACGAGAAGTTCTCAGCAGCTGGACCGGTGCTA
TCTATCCGAGTGTGCAGGGATGTTATAACTCGTCGATCGTTGGGTTACGCTTTTGTCAAC
TTTCAGCAGCCAGCTGATGCTGAGAGGGCATTGGACACTATGAATTATGACCCGATTAAA
GGACGTCCAATTCGTATTATGTGGAGCCTACGTGACCCATATCTTCGAAAATCTGGTGTT
GGCAACATATTCATCAAGAACTTGGATAAATCTATTGATAACAAGGCTCTATATGATACT
TTCTCAGCTTTTGGCAATATTTTCTCTTGCAAAGTGATGTTGCCAGATCAAAATAATGGT
TCGAAAGGATACGGCTTTGTTCATTTTGAGACCGACGAAGCTGGCTCCAGGGCTATTGAA
AAGGTGAACGGTATGTTGTTGAACGACAAGAAAGTTTATGTTGGAAAGTTTCTGACTCGC
TCGGAGCGAGTGAAAAAGATGGGAGAACGTGTTCGACAATTCACCAATGTCTACATTAAG
AACTTCTCGGACAAGCTTGATGAAAAGGCTTTACAAGTCATGTTCGAGCAACACGGGGTG
GTGAAGAGCGTTGCGGTGATGCGCGATCGGGACGGGAATTCCCGGGGGTTTGGGTTTGTA
AACATGGAAACCCATGAAGATGCTGAGGCGGCTTGTGAAGCATTGAATGGAATTCAAGTT
GAAGGTACAAACGACACATTATACGTTGGACGAGCGCAGAAGAAACAGGAGCGACAGCAA
GAGCTTCGTGGTCAATATGAAGCTCAGAAGCAAGAACGCATCCAACGATTCCAAGGTGTC
AACCTTTATGTGAAGAACTTAGATGACAATGTGACCGATGATGAGTTGCGTGAAGCTTTC
TCAACTTACGGGACGATCACCAGCGTCAAGATCATGTCTGATGGTAAGCATTCACGTGGG
TTTGGGTTCGTTTGCCTCAGTTCACCTGAAGAAGCCACAAAAGCCGTCACGGAAATGAAC
GGACGAATTGTTGGCACCAAACAGTTGTACGTGGCTCTTGCAAAACGCAGGGAGGATAGG
AAGGCACATCTAACAGCTTACAACGGTAAGAAACTGTTAAATAAGTTCACACCAGTCCAT
TTGACCCCTCCAAACCAGATAATGGGCCAACCATTCCAAACTGCCGGTGGCGCATCTGGT
TATTTCATGCCATTCCAAGGAGCCCAGCGAACCTACATGCAGAGTCAGATCATCCGTGCC
ACCCCAAGATGGCAGCATAACCCACGGAAGCTTTCTGGTATAAACCAGTTGATGGCTGGG
GACATGCGTACAGTTGGCCCCCGTGCTCCAGCAGCCCCAGCGATCCGACCCATGACCACC
CCAGTTGGGGATCGTGGGGTTATTCACCCACAACACCAGATGATGCACCAACAAGCCATG
CCCCAGGTAACCACCATCAACACCCCTGCATTCAAGTACAACCAAAGTGTGCGCAACCCA
ACGATGGCTGGATACCCACAATCTGGCAAACCTCAGTCCCAGCAACAGACCGACCCAGCC
ATGCAACAAGCTGTTCATGTACAAGGACAGGAACCACTTACATCGAGCATGTTGGCTGCT
GTACAACCTCAAGAGCAAAAACAAATGCTGGGAGAAAGGTTGTACCCGTTGATTGAGCAG
TCCCATCCCGATCTTGCTTCGAAGATAACTGGAATGTTGCTGGAAATCGACAACTCTGAG
CTTCTTCACATGTTGGAGTCGCGCGAGTCGTTGAAAGCCAAGGTGGAGGAGGCAGTTGCT
GTGCTGCAAGCTCACCAGGAGAAAGTGGCGGCAGCTACACGCCGCCCTGCTAATACAACC
CCCGCTGCTGCTGCCACTGAAGCCC

InterProScan

Gene3D	Nucleotide-bd_a/b_plait_sf (IPR012677) - T[2-94] 2.8E-24 - T[95-183] 7.0E-21 - T[184-269] 1.4E-21 - T[270-391] 1.8E-29
SUPERFAMILY	RBD_domain_sf (IPR035979) - T[12-180] 6.52E-48 - T[189-294] 3.76E-23 - T[298-382] 1.11E-26
ProSiteProfiles	RRM_dom (IPR000504) - T[13-91] 17.523 - T[101-179] 16.244 - T[195-274] 17.216 - T[300-376] 19.11
TIGRFAM	PABP_1234 (IPR006515) - T[13-623] 2.9E-220
SMART	RRM_dom (IPR000504) - T[14-87] 5.6E-22 - T[102-175] 4.6E-20 - T[196-270] 5.6E-22 - T[301-372] 5.3E-25
Pfam	RRM_dom (IPR000504) - T[15-85] 7.4E-20 - T[103-172] 5.4E-16 - T[197-264] 1.6E-17 - T[302-369] 2.5E-19
SMART	RRM_dom_euk (IPR003954) - T[102-175] 2.3 - T[196-268] 13.0 - T[301-372] 0.6
SUPERFAMILY	PABP-dom (IPR036053) - T[494-633] 2.22E-44
ProSiteProfiles	PABP_HYD (IPR002004) - T[550-627] 22.203
Pfam	PABP_HYD (IPR002004) - T[556-622] 1.3E-29
SMART	PABP_HYD (IPR002004) - T[562-625] 1.4E-38