- Transcript 'KH2012:KH.L37.5.v3.A...' >
- Transcript 'Cisavi.CG.ENS81.R283...'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R283.275384-287631.05273.t
Possible name(s)
PABPC1; PABPC3; PABPC4
Gene model
Location
R283 [275,389 / 279,625]
Amino acid sequence
Length: 662
>Cisavi.CG.ENS81.R283.275384-287631.05273.p
SSGTATSYPMASLYVGDLHLDVTEAMLYEKFSAAGPVLSIRVCRDVITRRSLGYAFVNFQ
QPADAERALDTMNYDPIKGRPIRIMWSLRDPYLRKSGVGNIFIKNLDKSIDNKALYDTFS
AFGNIFSCKVMLPDQNNGSKGYGFVHFETDEAGSRAIEKVNGMLLNDKKVYVGKFLTRSE
RVKKMGERVRQFTNVYIKNFSDKLDEKALQVMFEQHGVVKSVAVMRDRDGNSRGFGFVNM
ETHEDAEAACEALNGIQVEGTNDTLYVGRAQKKQERQQELRGQYEAQKQERIQRFQGVNL
YVKNLDDNVTDDELREAFSTYGTITSVKIMSDGKHSRGFGFVCLSSPEEATKAVTEMNGR
IVGTKQLYVALAKRREDRKAHLTAYNGKKLLNKFTPVHLTPPNQIMGQPFQTAGGASGYF
MPFQGAQRTYMQSQIIRATPRWQHNPRKLSGINQFGPRAPAAPAIRPMTTPVGDRGVIHP
QHQMMHQQAMPQVTTINTVISGVGQSKHCNLNINISISKCIELPAFKYNQSVRNPTMAGY
PQSGKPQSQQQTDPAMQQAVHVQGQEPLTSSMLAAVQPQEQKQMLGERLYPLIEQSHPDL
ASKITGMLLEIDNSELLHMLESRESLKAKVEEAVAVLQAHQEKVAAATRRPANTTPAAAA
TE
Nucleotide sequence
Length: 2,011
>Cisavi.CG.ENS81.R283.275384-287631.05273.t
AGCTCGGGAACAGCAACCAGTTATCCAATGGCTTCACTTTACGTGGGGGATTTGCATCTT
GACGTGACGGAGGCCATGTTGTACGAGAAGTTCTCAGCAGCTGGACCGGTGCTATCTATC
CGAGTGTGCAGGGATGTTATAACTCGTCGATCGTTGGGTTACGCTTTTGTCAACTTTCAG
CAGCCAGCTGATGCTGAGAGGGCATTGGACACTATGAATTATGACCCGATTAAAGGACGT
CCAATTCGTATTATGTGGAGCCTACGTGACCCATATCTTCGAAAATCTGGTGTTGGCAAC
ATATTCATCAAGAACTTGGATAAATCTATTGATAACAAGGCTCTATATGATACTTTCTCA
GCTTTTGGCAATATTTTCTCTTGCAAAGTGATGTTGCCAGATCAAAATAATGGTTCGAAA
GGATACGGCTTTGTTCATTTTGAGACCGACGAAGCTGGCTCCAGGGCTATTGAAAAGGTG
AACGGTATGTTGTTGAACGACAAGAAAGTTTATGTTGGAAAGTTTCTGACTCGCTCGGAG
CGAGTGAAAAAGATGGGAGAACGTGTTCGACAATTCACCAATGTCTACATTAAGAACTTC
TCGGACAAGCTTGATGAAAAGGCTTTACAAGTCATGTTCGAGCAACACGGGGTGGTGAAG
AGCGTTGCGGTGATGCGCGATCGGGACGGGAATTCCCGGGGGTTTGGGTTTGTAAACATG
GAAACCCATGAAGATGCTGAGGCGGCTTGTGAAGCATTGAATGGAATTCAAGTTGAAGGT
ACAAACGACACATTATACGTTGGACGAGCGCAGAAGAAACAGGAGCGACAGCAAGAGCTT
CGTGGTCAATATGAAGCTCAGAAGCAAGAACGCATCCAACGATTCCAAGGTGTCAACCTT
TATGTGAAGAACTTAGATGACAATGTGACCGATGATGAGTTGCGTGAAGCTTTCTCAACT
TACGGGACGATCACCAGCGTCAAGATCATGTCTGATGGTAAGCATTCACGTGGGTTTGGG
TTCGTTTGCCTCAGTTCACCTGAAGAAGCCACAAAAGCCGTCACGGAAATGAACGGACGA
ATTGTTGGCACCAAACAGTTGTACGTGGCTCTTGCAAAACGCAGGGAGGATAGGAAGGCA
CATCTAACAGCTTACAACGGTAAGAAACTGTTAAATAAGTTCACACCAGTCCATTTGACC
CCTCCAAACCAGATAATGGGCCAACCATTCCAAACTGCCGGTGGCGCATCTGGTTATTTC
ATGCCATTCCAAGGAGCCCAGCGAACCTACATGCAGAGTCAGATCATCCGTGCCACCCCA
AGATGGCAGCATAACCCACGGAAGCTTTCTGGTATAAACCAGTTTGGCCCCCGTGCTCCA
GCAGCCCCAGCGATCCGACCCATGACCACCCCAGTTGGGGATCGTGGGGTTATTCACCCA
CAACACCAGATGATGCACCAACAAGCCATGCCCCAGGTAACCACCATCAACACCGTAATA
TCTGGAGTGGGACAATCAAAGCATTGCAACTTGAATATTAACATATCAATATCGAAATGC
ATTGAATTGCCTGCATTCAAGTACAACCAAAGTGTGCGCAACCCAACGATGGCTGGATAC
CCACAATCTGGCAAACCTCAGTCCCAGCAACAGACCGACCCAGCCATGCAACAAGCTGTT
CATGTACAAGGACAGGAACCACTTACATCGAGCATGTTGGCTGCTGTACAACCTCAAGAG
CAAAAACAAATGCTGGGAGAAAGGTTGTACCCGTTGATTGAGCAGTCCCATCCCGATCTT
GCTTCGAAGATAACTGGAATGTTGCTGGAAATCGACAACTCTGAGCTTCTTCACATGTTG
GAGTCGCGCGAGTCGTTGAAAGCCAAGGTGGAGGAGGCAGTTGCTGTGCTGCAAGCTCAC
CAGGAGAAAGTGGCGGCAGCTACACGCCGCCCTGCTAATACAACCCCCGCTGCTGCTGCC
ACTGAAGCCCCAGTCCCTATAGCTGTAGGAG
| Gene3D |
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[1-92] 3.4E-24 - T[93-181] 7.2E-21 - T[182-267] 1.4E-21 - T[268-389] 1.8E-29 |
| SUPERFAMILY |
RBD_domain_sf (IPR035979) - T[10-178] 6.79E-48 - T[188-292] 4.03E-23 - T[297-380] 1.34E-26 |
| TIGRFAM |
PABP_1234 (IPR006515) - T[11-638] 7.5E-219 |
| ProSiteProfiles |
RRM_dom (IPR000504) - T[11-89] 17.523 - T[99-177] 16.244 - T[193-272] 17.216 - T[298-374] 19.11 |
| SMART |
RRM_dom (IPR000504) - T[12-85] 5.6E-22 - T[100-173] 4.6E-20 - T[194-268] 5.6E-22 - T[299-370] 5.3E-25 |
| Pfam |
RRM_dom (IPR000504) - T[13-83] 7.6E-20 - T[101-170] 5.5E-16 - T[195-262] 1.7E-17 - T[300-367] 2.6E-19 |
| SMART |
RRM_dom_euk (IPR003954) - T[100-173] 2.3 - T[194-266] 13.0 - T[299-370] 0.6 |
| SUPERFAMILY |
PABP-dom (IPR036053) - T[526-648] 5.63E-44 |
| ProSiteProfiles |
PABP_HYD (IPR002004) - T[565-642] 22.203 |
| Pfam |
PABP_HYD (IPR002004) - T[571-637] 1.4E-29 |
| SMART |
PABP_HYD (IPR002004) - T[577-640] 1.4E-38 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PABP1_HUMAN | 58.779 % | 719 | 0 |
| PABP4_HUMAN | 58.182 % | 725 | 0 |
| PABP3_HUMAN | 54.532 % | 659 | 0 |