- Transcript 'KH2012:KH.L37.5.v1.A...' >
- Transcript 'Cisavi.CG.ENS81.R283...' >
- Transcript 'Boschl.CG.Botznik201...' >
- Clone 'AHC0AAA120YK13' >
- Transcript 'Cisavi.CG.ENS81.R283...'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R283.275384-287631.05275.t
Possible name(s)
PABPC1; PABPC3; PABPC4
Gene model
Location
R283 [275,416 / 279,612]
Amino acid sequence
Length: 603
>Cisavi.CG.ENS81.R283.275384-287631.05275.p
SLYVGDLHLDVTEAMLYEKFSAAGPVLSIRVCRDVITRRSLGYAFVNFQQPADAERALDT
MNYDPIKGRPIRIMWSLRDPYLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNIFSCKVS
IYQNNGSKGYGFVHFETDEAGSRAIEKVNGMLLNDKKVYVGKFLTRSERVKKMGERVRQF
TNVYIKNFSDKLDEKALQVMFEQHGVVKSVAVMRDRDGNSRGFGFVNMETHEDAEAACEA
LNGIQVEGTNDTLYVGRAQKKQERQQELRGQYEAQKQERIQRFQGVNLYVKNLDDNVTDD
ELREAFSTYGTITSVKIMSDGKHSRGFGFVCLSSPEEATKAVTEMNGRIVGTKQLYVALA
KRREDRKAHLTAYVTFSIQLRCVKTHCPPSFMPNMWKILFIGNNNKLFLMAGDMRTVGPR
APAAPAIRPMTTPVGDRGVIHPQHQMMHQQAMPQVTTINTPAFKYNQSVRNPTMAGYPQS
GKPQSQQQTDPAMQQAVHVQGQEPLTSSMLAAVQPQEQKQMLGERLYPLIEQSHPDLASK
ITGMLLEIDNSELLHMLESRESLKAKVEEAVAVLQAHQEKVAAATRRPANTTPAAAATEA
PVP
Nucleotide sequence
Length: 1,815
>Cisavi.CG.ENS81.R283.275384-287631.05275.t
ATGGCTTCACTTTACGTGGGGGATTTGCATCTTGACGTGACGGAGGCCATGTTGTACGAG
AAGTTCTCAGCAGCTGGACCGGTGCTATCTATCCGAGTGTGCAGGGATGTTATAACTCGT
CGATCGTTGGGTTACGCTTTTGTCAACTTTCAGCAGCCAGCTGATGCTGAGAGGGCATTG
GACACTATGAATTATGACCCGATTAAAGGACGTCCAATTCGTATTATGTGGAGCCTACGT
GACCCATATCTTCGAAAATCTGGTGTTGGCAACATATTCATCAAGAACTTGGATAAATCT
ATTGATAACAAGGCTCTATATGATACTTTCTCAGCTTTTGGCAATATTTTCTCTTGCAAA
GTGAGTATTTATCAAAATAATGGTTCGAAAGGATACGGCTTTGTTCATTTTGAGACCGAC
GAAGCTGGCTCCAGGGCTATTGAAAAGGTGAACGGTATGTTGTTGAACGACAAGAAAGTT
TATGTTGGAAAGTTTCTGACTCGCTCGGAGCGAGTGAAAAAGATGGGAGAACGTGTTCGA
CAATTCACCAATGTCTACATTAAGAACTTCTCGGACAAGCTTGATGAAAAGGCTTTACAA
GTCATGTTCGAGCAACACGGGGTGGTGAAGAGCGTTGCGGTGATGCGCGATCGGGACGGG
AATTCCCGGGGGTTTGGGTTTGTAAACATGGAAACCCATGAAGATGCTGAGGCGGCTTGT
GAAGCATTGAATGGAATTCAAGTTGAAGGTACAAACGACACATTATACGTTGGACGAGCG
CAGAAGAAACAGGAGCGACAGCAAGAGCTTCGTGGTCAATATGAAGCTCAGAAGCAAGAA
CGCATCCAACGATTCCAAGGTGTCAACCTTTATGTGAAGAACTTAGATGACAATGTGACC
GATGATGAGTTGCGTGAAGCTTTCTCAACTTACGGGACGATCACCAGCGTCAAGATCATG
TCTGATGGTAAGCATTCACGTGGGTTTGGGTTCGTTTGCCTCAGTTCACCTGAAGAAGCC
ACAAAAGCCGTCACGGAAATGAACGGACGAATTGTTGGCACCAAACAGTTGTACGTGGCT
CTTGCAAAACGCAGGGAGGATAGGAAGGCACATCTAACAGCTTATGTAACTTTCTCAATA
CAGCTGCGATGTGTTAAAACACATTGTCCGCCAAGTTTCATGCCAAATATGTGGAAAATC
CTATTTATTGGAAACAACAATAAGTTGTTTCTTATGGCTGGGGACATGCGTACAGTTGGC
CCCCGTGCTCCAGCAGCCCCAGCGATCCGACCCATGACCACCCCAGTTGGGGATCGTGGG
GTTATTCACCCACAACACCAGATGATGCACCAACAAGCCATGCCCCAGGTAACCACCATC
AACACCCCTGCATTCAAGTACAACCAAAGTGTGCGCAACCCAACGATGGCTGGATACCCA
CAATCTGGCAAACCTCAGTCCCAGCAACAGACCGACCCAGCCATGCAACAAGCTGTTCAT
GTACAAGGACAGGAACCACTTACATCGAGCATGTTGGCTGCTGTACAACCTCAAGAGCAA
AAACAAATGCTGGGAGAAAGGTTGTACCCGTTGATTGAGCAGTCCCATCCCGATCTTGCT
TCGAAGATAACTGGAATGTTGCTGGAAATCGACAACTCTGAGCTTCTTCACATGTTGGAG
TCGCGCGAGTCGTTGAAAGCCAAGGTGGAGGAGGCAGTTGCTGTGCTGCAAGCTCACCAG
GAGAAAGTGGCGGCAGCTACACGCCGCCCTGCTAATACAACCCCCGCTGCTGCTGCCACT
GAAGCCCCAGTCCCT
| TIGRFAM |
PABP_1234 (IPR006515) - T[1-575] 1.0E-209 |
| Gene3D |
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[1-81] 1.1E-23 - T[82-169] 2.4E-20 - T[170-255] 1.3E-21 - T[256-372] 1.9E-29 |
| ProSiteProfiles |
RRM_dom (IPR000504) - T[1-78] 17.626 - T[88-165] 15.869 - T[181-260] 17.216 - T[286-362] 19.11 |
| SMART |
RRM_dom (IPR000504) - T[1-74] 5.6E-22 - T[89-161] 6.8E-19 - T[182-256] 5.6E-22 - T[287-358] 5.3E-25 |
| Pfam |
RRM_dom (IPR000504) - T[2-72] 6.7E-20 - T[90-158] 8.0E-16 - T[183-250] 1.5E-17 - T[288-355] 2.3E-19 |
| SUPERFAMILY |
RBD_domain_sf (IPR035979) - T[2-166] 5.1E-46 - T[176-280] 3.49E-23 - T[285-367] 1.29E-26 |
| SUPERFAMILY |
PABP-dom (IPR036053) - T[446-585] 1.96E-44 |
| ProSiteProfiles |
PABP_HYD (IPR002004) - T[502-579] 22.203 |
| Pfam |
PABP_HYD (IPR002004) - T[508-574] 1.2E-29 |
| SMART |
PABP_HYD (IPR002004) - T[514-577] 1.4E-38 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PABP1_HUMAN | 58.599 % | 692 | 0 |
| PABP4_HUMAN | 56.542 % | 679 | 0 |
| PAP1L_HUMAN | 57.167 % | 639 | 0 |