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- Transcript 'Cisavi.CG.ENS81.R283...'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R283.275384-287631.05276.t
Possible name(s)
PABPC1; PABPC3; PABPC4
Gene model
Location
R283 [275,416 / 279,528]
Amino acid sequence
Length: 588
>Cisavi.CG.ENS81.R283.275384-287631.05276.p
MASLYVGDLHLDVTEAMLYEKFSAAGPVLSIRVCRDVITRRSLGYAFVNFQQPADAERAL
DTMNYDPIKGRPIRIMWSLRDPYLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNIFSCK
VSIFFLNGSKGYGFVHFETDEAGSRAIEKVNGMLLNDKKVYVGKFLTRSERVKKMGERVR
QFTNVYIKNFSDKLDEKALQVMFEQHGVVKSVAVMRDRDGNSRGFGFVNMETHEDAEAAC
EALNGIQVEGTNDTLYVGRAQKKQERQQELRGQYEAQKQERIQRFQGVNLYVKNLDDNVT
DDELREAFSTYGTITSVKIMSDGKHSRGFGFVCLSSPEEATKAVTEMNGRIVGTKQLYVA
LAKRREDRKAHLTAYNGKKLLNKFTPPNQIMGQPFQTAGGASGYFMPFQGAQRTYMQSQI
IRATPRWQHNPRKLSGINQCNFLNTAAMSIRPMTTPVGDRGVIHPQHQMMHQQAMPQYNQ
SVRNPTMAGYPQSGKPQSQQQTDPAMQQAVHVQGQEPLTSSMLAAVQPQEQKQMLGERLY
PLIEQSHPDLASKITGMLLEIDNSELLHMLESRESLKAKVEEAVAVLQ
Nucleotide sequence
Length: 1,764
>Cisavi.CG.ENS81.R283.275384-287631.05276.t
ATGGCTTCACTTTACGTGGGGGATTTGCATCTTGACGTGACGGAGGCCATGTTGTACGAG
AAGTTCTCAGCAGCTGGACCGGTGCTATCTATCCGAGTGTGCAGGGATGTTATAACTCGT
CGATCGTTGGGTTACGCTTTTGTCAACTTTCAGCAGCCAGCTGATGCTGAGAGGGCATTG
GACACTATGAATTATGACCCGATTAAAGGACGTCCAATTCGTATTATGTGGAGCCTACGT
GACCCATATCTTCGAAAATCTGGTGTTGGCAACATATTCATCAAGAACTTGGATAAATCT
ATTGATAACAAGGCTCTATATGATACTTTCTCAGCTTTTGGCAATATTTTCTCTTGCAAA
GTGAGTATTTTTTTCCTAAATGGTTCGAAAGGATACGGCTTTGTTCATTTTGAGACCGAC
GAAGCTGGCTCCAGGGCTATTGAAAAGGTGAACGGTATGTTGTTGAACGACAAGAAAGTT
TATGTTGGAAAGTTTCTGACTCGCTCGGAGCGAGTGAAAAAGATGGGAGAACGTGTTCGA
CAATTCACCAATGTCTACATTAAGAACTTCTCGGACAAGCTTGATGAAAAGGCTTTACAA
GTCATGTTCGAGCAACACGGGGTGGTGAAGAGCGTTGCGGTGATGCGCGATCGGGACGGG
AATTCCCGGGGGTTTGGGTTTGTAAACATGGAAACCCATGAAGATGCTGAGGCGGCTTGT
GAAGCATTGAATGGAATTCAAGTTGAAGGTACAAACGACACATTATACGTTGGACGAGCG
CAGAAGAAACAGGAGCGACAGCAAGAGCTTCGTGGTCAATATGAAGCTCAGAAGCAAGAA
CGCATCCAACGATTCCAAGGTGTCAACCTTTATGTGAAGAACTTAGATGACAATGTGACC
GATGATGAGTTGCGTGAAGCTTTCTCAACTTACGGGACGATCACCAGCGTCAAGATCATG
TCTGATGGTAAGCATTCACGTGGGTTTGGGTTCGTTTGCCTCAGTTCACCTGAAGAAGCC
ACAAAAGCCGTCACGGAAATGAACGGACGAATTGTTGGCACCAAACAGTTGTACGTGGCT
CTTGCAAAACGCAGGGAGGATAGGAAGGCACATCTAACAGCTTACAACGGTAAGAAACTG
TTAAATAAGTTCACACCACCAAACCAGATAATGGGCCAACCATTCCAAACTGCCGGTGGC
GCATCTGGTTATTTCATGCCATTCCAAGGAGCCCAGCGAACCTACATGCAGAGTCAGATC
ATCCGTGCCACCCCAAGATGGCAGCATAACCCACGGAAGCTTTCTGGTATAAACCAGTGT
AACTTTCTCAATACAGCTGCGATGTCGATCCGACCCATGACCACCCCAGTTGGGGATCGT
GGGGTTATTCACCCACAACACCAGATGATGCACCAACAAGCCATGCCCCAGTACAACCAA
AGTGTGCGCAACCCAACGATGGCTGGATACCCACAATCTGGCAAACCTCAGTCCCAGCAA
CAGACCGACCCAGCCATGCAACAAGCTGTTCATGTACAAGGACAGGAACCACTTACATCG
AGCATGTTGGCTGCTGTACAACCTCAAGAGCAAAAACAAATGCTGGGAGAAAGGTTGTAC
CCGTTGATTGAGCAGTCCCATCCCGATCTTGCTTCGAAGATAACTGGAATGTTGCTGGAA
ATCGACAACTCTGAGCTTCTTCACATGTTGGAGTCGCGCGAGTCGTTGAAAGCCAAGGTG
GAGGAGGCAGTTGCTGTGCTGCAA
| TIGRFAM |
PABP_1234 (IPR006515) - T[2-588] 5.8E-218 |
| Gene3D |
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[2-83] 7.9E-24 - T[84-171] 9.5E-19 - T[172-258] 1.2E-21 - T[259-379] 1.6E-29 |
| ProSiteProfiles |
RRM_dom (IPR000504) - T[2-80] 17.523 - T[90-167] 15.153 - T[183-262] 17.216 - T[288-364] 19.11 |
| SUPERFAMILY |
RBD_domain_sf (IPR035979) - T[3-168] 3.26E-45 - T[177-281] 3.36E-23 - T[286-370] 8.87E-27 |
| SMART |
RRM_dom (IPR000504) - T[3-76] 5.6E-22 - T[91-163] 1.4E-17 - T[184-258] 5.6E-22 - T[289-360] 5.3E-25 |
| Pfam |
RRM_dom (IPR000504) - T[4-74] 6.4E-20 - T[92-160] 2.1E-14 - T[185-252] 1.4E-17 - T[290-357] 2.2E-19 |
| SMART |
RRM_dom_euk (IPR003954) - T[91-163] 2.9 - T[184-256] 13.0 - T[289-360] 0.6 |
| SUPERFAMILY |
PABP-dom (IPR036053) - T[467-588] 9.03E-42 |
| ProSiteProfiles |
PABP_HYD (IPR002004) - T[515-588] 21.508 |
| Pfam |
PABP_HYD (IPR002004) - T[521-587] 1.2E-29 |
| SMART |
PABP_HYD (IPR002004) - T[527-588] 4.8E-34 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PABP1_HUMAN | 59.289 % | 695 | 0 |
| PABP4_HUMAN | 59.259 % | 691 | 0 |
| PAP1L_HUMAN | 57.166 % | 649 | 0 |