- Transcript 'Cisavi.CG.ENS81.R283...'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R283.275384-287631.05277.t
Possible name(s)
PABPC1; PABPC3; PABPC4
Gene model
Location
R283 [275,428 / 279,600]
Amino acid sequence
Length: 560
>Cisavi.CG.ENS81.R283.275384-287631.05277.p
YVGDLHLDVTEAMLYEKFSAAGPVLSIRVCRDVITRRSLGYAFVNFQQPADAERALDTMN
YDPIKGRPIRIMWSLRDPYLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNIFSCKVMLP
DQNNGSKGYGFVHFETDEAGSRAIEKVNGMLLNDKKVYVGKFLTRSERVKKMGERVRQFT
NVYIKNFSDKLDEKALQVMFEQHGVVKSVAVMRDRDGNSRGFGFVNMETHEDAEAACEAL
NGIQVEGTNDTLYVGRAQKKQERQQELRGQYEAQKQERIQRFQGVNLYVKNLDDNVTDDE
LREAFSTYGTITSVKIMSDGKHSRGFGFVCLSSPEEATKAVTEMNGRIVGTKQLYVALAK
RREDRKAHLTAYNGKKLLNKFTPVHLTPPNQIMGQPFQTAGGASGYFMPFQGAQRTYMQS
QIIRATPRWQHNPRKLSVVSCPSNHSQQQTDPAMQQAVHVQGQEPLTSSMLAAVQPQEQK
QMLGERLYPLIEQSHPDLASKITGMLLEIDNSELLHMLESRESLKAKVEEAVAVLQAHQE
KVAAATRRPANTTPAAAATE
Nucleotide sequence
Length: 1,680
>Cisavi.CG.ENS81.R283.275384-287631.05277.t
TACGTGGGGGATTTGCATCTTGACGTGACGGAGGCCATGTTGTACGAGAAGTTCTCAGCA
GCTGGACCGGTGCTATCTATCCGAGTGTGCAGGGATGTTATAACTCGTCGATCGTTGGGT
TACGCTTTTGTCAACTTTCAGCAGCCAGCTGATGCTGAGAGGGCATTGGACACTATGAAT
TATGACCCGATTAAAGGACGTCCAATTCGTATTATGTGGAGCCTACGTGACCCATATCTT
CGAAAATCTGGTGTTGGCAACATATTCATCAAGAACTTGGATAAATCTATTGATAACAAG
GCTCTATATGATACTTTCTCAGCTTTTGGCAATATTTTCTCTTGCAAAGTGATGTTGCCA
GATCAAAATAATGGTTCGAAAGGATACGGCTTTGTTCATTTTGAGACCGACGAAGCTGGC
TCCAGGGCTATTGAAAAGGTGAACGGTATGTTGTTGAACGACAAGAAAGTTTATGTTGGA
AAGTTTCTGACTCGCTCGGAGCGAGTGAAAAAGATGGGAGAACGTGTTCGACAATTCACC
AATGTCTACATTAAGAACTTCTCGGACAAGCTTGATGAAAAGGCTTTACAAGTCATGTTC
GAGCAACACGGGGTGGTGAAGAGCGTTGCGGTGATGCGCGATCGGGACGGGAATTCCCGG
GGGTTTGGGTTTGTAAACATGGAAACCCATGAAGATGCTGAGGCGGCTTGTGAAGCATTG
AATGGAATTCAAGTTGAAGGTACAAACGACACATTATACGTTGGACGAGCGCAGAAGAAA
CAGGAGCGACAGCAAGAGCTTCGTGGTCAATATGAAGCTCAGAAGCAAGAACGCATCCAA
CGATTCCAAGGTGTCAACCTTTATGTGAAGAACTTAGATGACAATGTGACCGATGATGAG
TTGCGTGAAGCTTTCTCAACTTACGGGACGATCACCAGCGTCAAGATCATGTCTGATGGT
AAGCATTCACGTGGGTTTGGGTTCGTTTGCCTCAGTTCACCTGAAGAAGCCACAAAAGCC
GTCACGGAAATGAACGGACGAATTGTTGGCACCAAACAGTTGTACGTGGCTCTTGCAAAA
CGCAGGGAGGATAGGAAGGCACATCTAACAGCTTACAACGGTAAGAAACTGTTAAATAAG
TTCACACCAGTCCATTTGACCCCTCCAAACCAGATAATGGGCCAACCATTCCAAACTGCC
GGTGGCGCATCTGGTTATTTCATGCCATTCCAAGGAGCCCAGCGAACCTACATGCAGAGT
CAGATCATCCGTGCCACCCCAAGATGGCAGCATAACCCACGGAAGCTTTCTGTTGTTTCT
TGTCCTTCTAACCATTCCCAGCAACAGACCGACCCAGCCATGCAACAAGCTGTTCATGTA
CAAGGACAGGAACCACTTACATCGAGCATGTTGGCTGCTGTACAACCTCAAGAGCAAAAA
CAAATGCTGGGAGAAAGGTTGTACCCGTTGATTGAGCAGTCCCATCCCGATCTTGCTTCG
AAGATAACTGGAATGTTGCTGGAAATCGACAACTCTGAGCTTCTTCACATGTTGGAGTCG
CGCGAGTCGTTGAAAGCCAAGGTGGAGGAGGCAGTTGCTGTGCTGCAAGCTCACCAGGAG
AAAGTGGCGGCAGCTACACGCCGCCCTGCTAATACAACCCCCGCTGCTGCTGCCACTGAA
| TIGRFAM |
PABP_1234 (IPR006515) - T[1-421] 1.2E-177 |
| Gene3D |
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[1-79] 9.6E-23 - T[80-168] 5.6E-21 - T[169-255] 1.1E-21 - T[256-376] 1.6E-29 |
| ProSiteProfiles |
RRM_dom (IPR000504) - T[1-76] 17.063 - T[86-164] 16.244 - T[180-259] 17.216 - T[285-361] 19.11 |
| Pfam |
RRM_dom (IPR000504) - T[1-70] 2.9E-19 - T[88-157] 4.4E-16 - T[182-249] 1.3E-17 - T[287-354] 2.0E-19 |
| SMART |
RRM_dom (IPR000504) - T[1-72] 6.4E-18 - T[87-160] 4.6E-20 - T[181-255] 5.6E-22 - T[286-357] 5.3E-25 |
| SUPERFAMILY |
RBD_domain_sf (IPR035979) - T[1-165] 1.77E-46 - T[175-278] 3.22E-23 - T[284-367] 1.02E-26 |
| SMART |
RRM_dom_euk (IPR003954) - T[87-160] 2.3 - T[181-253] 13.0 - T[286-357] 0.6 |
| SUPERFAMILY |
PABP-dom (IPR036053) - T[428-546] 6.02E-43 |
| ProSiteProfiles |
PABP_HYD (IPR002004) - T[463-540] 22.203 |
| Pfam |
PABP_HYD (IPR002004) - T[469-535] 1.1E-29 |
| SMART |
PABP_HYD (IPR002004) - T[475-538] 1.4E-38 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PABP1_HUMAN | 58.604 % | 681 | 0 |
| PABP3_HUMAN | 54.067 % | 622 | 0 |
| PAP1L_HUMAN | 55.96 % | 620 | 0 |