- Transcript 'KH2012:KH.L37.5.v1.A...' >
- Transcript 'KH2012:KH.L42.6.v1.A...' >
- Transcript 'Cisavi.CG.ENS81.R283...' >
- Transcript 'KH2012:KH.L37.5.v1.A...' >
- Transcript 'Cisavi.CG.ENS81.R283...'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R283.275384-287631.05278.t
Possible name(s)
PABPC1; PABPC3; PABPC4
Gene model
Location
R283 [275,509 / 278,415]
Amino acid sequence
Length: 248
>Cisavi.CG.ENS81.R283.275384-287631.05278.p
ERVRQFTNVYIKNFSDKLDEKALQVMFEQHGVVKSVAVMRDRDGNSRGFGFVNMETHEDA
EAACEALNGIQVEGTNDTLYVGRAQKKQERQQELRGQYEAQKQERIQRFQGVNLYVKNLD
DNVTDDELREAFSTYGTITSVKIMSDGKHSRGFGFVCLSSPEEATKAVTEMNGRIVGTKQ
LYVALAKRREDRKAHLTAYNGKKLLNKFTPIMGQPFQTAGGASGYFMPFQGAQRTYMQSQ
IIRATPRW
Nucleotide sequence
Length: 1,176
>Cisavi.CG.ENS81.R283.275384-287631.05278.t
CGAGTGTGCAGGGATGTTATAACTCGTCGATCGTTGGGTTACGCTTTTGTCAACTTTCAG
CAGCCAGCTGATGCTGAGAGGGCATTGGACACTATGAATTATGACCCGATTAAAGGACGT
CCAATTCGTATTATGTGGAGCCTACGTGACCCATATCTTCGAAAATCTGGTGTTGGCAAC
ATATTCATCAAGAACTTGGATAAATCTATTGATAACAAGGCTCTATATGATACTTTCTCA
GCTTTTGGCAATATTTTCTCTTGCAAAGTGTATTGCAATGAGAATGGTTCGAAAGGATAC
GGCTTTGTTCATTTTGAGACCGACGAAGCTGGCTCCAGGGCTATTGAAAAGGTGAACGGT
ATGTTGTTGAACGACAAGAAAGTTTATGTTGGAAAGTTTCTGACTCGCTCGGAGCGAGTG
AAAAAGATGGGAGAACGTGTTCGACAATTCACCAATGTCTACATTAAGAACTTCTCGGAC
AAGCTTGATGAAAAGGCTTTACAAGTCATGTTCGAGCAACACGGGGTGGTGAAGAGCGTT
GCGGTGATGCGCGATCGGGACGGGAATTCCCGGGGGTTTGGGTTTGTAAACATGGAAACC
CATGAAGATGCTGAGGCGGCTTGTGAAGCATTGAATGGAATTCAAGTTGAAGGTACAAAC
GACACATTATACGTTGGACGAGCGCAGAAGAAACAGGAGCGACAGCAAGAGCTTCGTGGT
CAATATGAAGCTCAGAAGCAAGAACGCATCCAACGATTCCAAGGTGTCAACCTTTATGTG
AAGAACTTAGATGACAATGTGACCGATGATGAGTTGCGTGAAGCTTTCTCAACTTACGGG
ACGATCACCAGCGTCAAGATCATGTCTGATGGTAAGCATTCACGTGGGTTTGGGTTCGTT
TGCCTCAGTTCACCTGAAGAAGCCACAAAAGCCGTCACGGAAATGAACGGACGAATTGTT
GGCACCAAACAGTTGTACGTGGCTCTTGCAAAACGCAGGGAGGATAGGAAGGCACATCTA
ACAGCTTACAACGGTAAGAAACTGTTAAATAAGTTCACACCAATAATGGGCCAACCATTC
CAAACTGCCGGTGGCGCATCTGGTTATTTCATGCCATTCCAAGGAGCCCAGCGAACCTAC
ATGCAGAGTCAGATCATCCGTGCCACCCCAAGATGG
| Gene3D |
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[1-81] 6.6E-22 - T[82-204] 2.8E-30 |
| SUPERFAMILY |
RBD_domain_sf (IPR035979) - T[4-106] 1.13E-23 - T[110-194] 2.01E-27 |
| ProSiteProfiles |
RRM_dom (IPR000504) - T[7-86] 17.216 - T[112-188] 19.11 |
| SMART |
RRM_dom (IPR000504) - T[8-82] 5.6E-22 - T[113-184] 5.3E-25 |
| Pfam |
RRM_dom (IPR000504) - T[9-76] 3.5E-18 - T[114-181] 5.5E-20 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PABP1_HUMAN | 53.516 % | 263 | 3.75E-84 |
| PABP4_HUMAN | 51.894 % | 269 | 1.99E-86 |
| PAP1L_HUMAN | 54.688 % | 262 | 5.16E-84 |