- Clone 'AHC0AAA146YE08' >
- Clone 'AHC0AAA175YA02' >
- Transcript 'KH2012:KH.C8.506.v1....' >
- Clone 'cilv008k19' >
- Transcript 'Cisavi.CG.ENS81.R30....'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R30.1983319-1996169.07571.t
Possible name(s)
COL4A1; COL4A2; COL4A6
Gene model
Location
R30 [1,983,318 / 1,995,264]
Amino acid sequence
Length: 1,650
>Cisavi.CG.ENS81.R30.1983319-1996169.07571.p
PCGGRDCSKLGKCGFCVSEKGRRGPPGIQGKAGPQGQLGFPGPEGVMGPKGYAGLAGRPG
KAGEKGDRGTIGVPGYSGINGVPGHPGEPGPRGFPGKDGCNGTDGDSGAAGSPGFNGVDG
IPGDAGPKGSKGEPAFVSVEDMIKGERGESGRLGPKGPSGTPGRSGLIGPKGYPGKPGPP
GKPGLKGSRGPQGHKGIGYQGETGAKGESGPPGLPGSPGFLTGQPDSQFTPIPGPPGRNG
SKGMRGEKGVRGETGYPGFEGAKGREGEKGEKGVRGLAGGRGPTGAAGVNGYDGAQGLQG
PIGSPGAPGEAGVPGPTGSNGQPGVNGFDGPSGEDGLAGNPGLPGNPGLPGVGEKGEIGI
RGLNGKNGQDGVPGLSGEQGPRGLPGVSGETIPGENGRDGPPGQTGAPGQSGSRGAPGEP
GHIIMLDGDKMVGPQGSPGIAGLRGEKGLRGVNGVDGSVGQKGEKGGECDCQDAVGETGS
PGPPGQDGLPGLSGLPGISGQSGEPGEPGEPGPNGPRGLDVRKSGETGPKGQKGESATLE
GEVKGEKGELGLPGGQGEPGIAGIPGQDGRNGRRGAQGEKGEVGPQGMPGLPGLKGFEGP
KGREGRSGQDAFGIPGPLGFKGEKGDEGFQGPNGFRGQKESIYGAAPKGDKGENGQSGGR
GYPGAKGSKGSRGEPGPEGLTGDDGEKGNVGEPGLPALPGAPGRKGEAGLPGQVGLPGDQ
GERGRTGEVGMKGPQGKPGLSIPGNPGQKGANGNDGLPGATGSKGSQGFPGLVGLPGPPG
FPGLEGTPGLRGLPGADGLAGEKGESALVGRRGPPGPTGSDGVAGPRGSIGRKGEVGPPG
LPASGELKGEKGQIGLSGRDGQLGVKGDKGSTGIPGETGLPGPPGEDGFPGAPGRPGARG
KNGRSGPKGNGGLAGLPGFDGMPGLSGNKGSPGKPGATGPQGFKGEKGSVPPGAQIQVPA
GEPGEAGPPGEPGVQGFPGRDGPKGEGGKPGIKGMVGDAGPPGDYGRNGLPGVEGQKGVK
GARGQLGFPGVIGKPGIAGQPGRAGLPGPVGLKGQKGMVGERGPDGRPGREGRPGLNGEN
GPKGLQGRRGLPGLSGLDGQPGQKGSMGINGKTGSKVTHSTFSAGNKGVIGMKGGRGLPG
LDGRDGLNGEPGTKGRAGTKVTMTLDTLTLILGEDGIPGSNGFDGQPGRRGQKGASGRSN
IPGPTGVDGPPGKCLMERIKGEVGPPGLFGESGPFGPKGMRGNPGPVGFEGKPGPPGEQG
LPGLLGEKGEEGVPGVTGLPGRQGEKGENGEPGLVGLSGVKGNQGFPGITGKPGFPGLVG
EPGIKGEPGRSIEPSELVTGPKGNMGVPGLPGPPGLIGRSGLPGLQGFKGDQGERGLDGR
DGIPGTHGQRGNPGPQGFIGPKGRAGRNGNPGRAGEPGPAGRVRPPGHLIVKHSQTVDVP
ECPAGMTKLWDGYSLLYLEGSEKAHGQDLGGAGSCMPRFNTMPFLYCNTQSVCKYGSRND
KSYWLSTTAAIPMMPVNVDMVQEYISRCSVCESSSIAMAVHSQDMVIPPCPEGWSGVWLG
YSFAMHTAAGAEGGGQSLSSPGSCLQDFRATPFIECNGARGHCFFYNNQYSFWLTTIPQD
YQFGTPQMETLKAGNLRTRVSRCQVCTRLN
Nucleotide sequence
Length: 5,487
>Cisavi.CG.ENS81.R30.1983319-1996169.07571.t
CCTTGCGGCGGGCGCGACTGTTCCAAACTCGGAAAATGTGGATTCTGCGTATCAGAGAAG
GGTCGAAGGGGACCCCCTGGTATTCAAGGCAAAGCAGGTCCTCAGGGACAGCTTGGTTTC
CCGGGTCCTGAAGGTGTTATGGGACCGAAAGGATACGCTGGTCTTGCTGGAAGACCTGGT
AAAGCTGGAGAGAAGGGAGATAGGGGGACAATCGGTGTACCAGGGTATTCAGGTATCAAT
GGAGTGCCTGGTCACCCTGGAGAGCCTGGTCCAAGAGGTTTCCCAGGTAAAGATGGTTGC
AATGGAACAGATGGTGACAGTGGTGCAGCTGGTTCACCTGGTTTTAATGGGGTTGATGGA
ATACCGGGAGATGCTGGACCTAAGGGCTCAAAGGGAGAGCCAGCTTTTGTAAGTGTGGAA
GACATGATTAAAGGAGAAAGGGGTGAAAGTGGTCGGCTTGGACCTAAAGGACCTTCTGGT
ACCCCTGGAAGATCTGGTCTTATTGGCCCCAAGGGTTACCCTGGCAAGCCAGGACCACCT
GGTAAACCTGGACTCAAAGGTAGCAGAGGACCTCAAGGCCATAAAGGGATCGGTTACCAG
GGCGAAACTGGAGCCAAGGGTGAATCTGGGCCTCCTGGTTTGCCTGGAAGTCCTGGATTT
TTAACTGGTCAGCCAGACAGCCAGTTCACACCAATTCCAGGACCACCGGGAAGAAATGGT
TCCAAGGGAATGAGAGGAGAGAAAGGTGTACGTGGAGAAACAGGATATCCAGGATTCGAG
GGTGCCAAAGGTAGAGAAGGGGAAAAAGGGGAGAAAGGAGTGCGTGGTTTGGCTGGAGGT
CGTGGGCCAACTGGAGCTGCAGGCGTAAATGGATATGATGGTGCACAGGGACTACAAGGG
CCGATAGGATCACCTGGTGCTCCGGGCGAAGCCGGCGTGCCAGGGCCAACGGGGTCCAAC
GGCCAACCTGGTGTTAATGGATTCGATGGTCCTTCCGGGGAAGACGGTCTTGCAGGAAAT
CCTGGTCTTCCTGGGAATCCAGGTTTACCTGGTGTTGGAGAAAAGGGAGAGATAGGAATT
AGAGGTTTAAATGGAAAGAATGGGCAAGATGGCGTCCCTGGTCTTAGTGGGGAACAAGGT
CCAAGAGGACTGCCAGGAGTATCTGGAGAAACCATTCCTGGGGAAAATGGAAGAGACGGC
CCTCCTGGACAAACTGGGGCCCCAGGGCAGTCTGGGTCCAGAGGTGCACCTGGTGAACCT
GGTCATATTATCATGCTGGACGGGGACAAGATGGTCGGGCCACAAGGATCACCTGGGATC
GCTGGTTTGCGAGGAGAAAAGGGCCTTCGAGGTGTAAATGGTGTGGATGGATCTGTTGGA
CAGAAAGGAGAAAAAGGAGGGGAATGTGACTGTCAAGATGCAGTTGGAGAGACAGGTAGT
CCTGGTCCACCTGGACAGGATGGTCTGCCTGGTTTATCTGGTCTACCGGGTATCAGTGGC
CAATCTGGTGAGCCTGGTGAGCCAGGAGAACCTGGACCTAATGGACCAAGGGGATTAGAT
GTGAGAAAATCTGGCGAGACTGGGCCAAAAGGCCAGAAAGGAGAATCTGCAACTTTAGAA
GGGGAGGTCAAGGGCGAAAAAGGTGAACTTGGTCTGCCTGGTGGACAAGGAGAACCAGGA
ATCGCTGGAATTCCTGGACAAGATGGAAGAAATGGCCGCCGAGGCGCACAAGGAGAAAAG
GGAGAAGTTGGACCACAAGGAATGCCAGGTCTACCTGGTTTGAAAGGATTTGAAGGCCCT
AAGGGAAGAGAGGGAAGATCTGGTCAAGATGCATTTGGGATACCTGGTCCACTTGGTTTT
AAGGGAGAAAAGGGAGATGAAGGATTCCAAGGTCCAAATGGATTCAGAGGACAAAAGGAA
TCAATATATGGGGCTGCTCCAAAGGGAGATAAAGGAGAAAATGGGCAATCAGGTGGACGT
GGGTATCCTGGAGCTAAAGGTTCCAAAGGATCACGCGGAGAGCCAGGGCCAGAAGGCCTT
ACTGGGGATGATGGAGAAAAGGGAAATGTTGGAGAACCAGGCTTGCCGGCGTTACCTGGT
GCACCAGGTAGAAAGGGTGAAGCAGGTCTTCCTGGTCAAGTTGGTTTACCTGGAGATCAG
GGTGAAAGGGGGCGAACAGGAGAAGTTGGTATGAAAGGACCTCAAGGGAAACCTGGATTG
TCCATACCAGGGAACCCAGGTCAGAAAGGGGCTAACGGCAACGATGGCCTACCTGGTGCA
ACTGGGTCTAAGGGAAGCCAAGGGTTCCCAGGTTTGGTCGGTCTCCCTGGTCCCCCTGGA
TTTCCTGGTTTGGAGGGAACACCTGGATTAAGAGGGTTGCCTGGAGCAGATGGATTGGCA
GGGGAAAAAGGAGAATCTGCCCTTGTTGGGAGAAGAGGCCCACCAGGACCAACTGGTTCA
GATGGTGTCGCTGGACCTCGGGGATCTATTGGACGCAAAGGGGAGGTTGGGCCACCGGGT
CTTCCAGCTAGTGGGGAGCTAAAGGGAGAAAAGGGACAAATTGGACTAAGTGGAAGAGAT
GGTCAACTTGGTGTCAAAGGCGACAAAGGATCAACTGGAATACCTGGTGAAACTGGGCTT
CCTGGACCACCTGGTGAAGATGGTTTCCCTGGAGCTCCAGGGCGACCTGGGGCAAGAGGA
AAAAATGGAAGATCCGGGCCAAAGGGCAACGGTGGCTTAGCTGGCCTACCAGGGTTTGAT
GGAATGCCTGGTCTATCTGGAAACAAAGGGTCTCCAGGAAAGCCTGGTGCCACCGGTCCT
CAAGGGTTTAAAGGAGAAAAGGGATCTGTCCCCCCTGGTGCCCAGATTCAGGTGCCAGCT
GGGGAACCAGGAGAGGCAGGACCACCTGGAGAGCCTGGTGTTCAGGGTTTCCCTGGTAGA
GATGGGCCAAAGGGTGAAGGTGGTAAACCTGGAATCAAAGGAATGGTTGGAGATGCAGGT
CCTCCAGGTGATTATGGAAGGAATGGCTTGCCAGGAGTTGAGGGGCAAAAGGGAGTAAAA
GGAGCACGGGGGCAGCTTGGCTTCCCAGGAGTCATCGGAAAACCGGGAATTGCTGGACAA
CCGGGAAGAGCTGGCTTACCAGGACCGGTTGGTCTCAAAGGACAGAAAGGCATGGTTGGT
GAACGCGGTCCTGATGGTAGACCTGGTCGTGAAGGTAGGCCCGGTCTAAATGGAGAAAAT
GGTCCAAAGGGTTTGCAAGGACGAAGAGGGTTACCTGGTCTTAGTGGATTGGATGGCCAA
CCCGGTCAAAAGGGCAGTATGGGCATTAATGGAAAAACAGGTTCCAAAGTTACTCATAGT
ACTTTTTCTGCAGGAAACAAAGGTGTAATAGGAATGAAAGGGGGCCGTGGTTTGCCAGGT
TTGGATGGTAGAGATGGCTTGAATGGTGAACCAGGCACAAAAGGAAGGGCTGGAACTAAA
GTGACAATGACTCTTGATACATTGACTCTTATATTAGGTGAGGATGGGATCCCTGGTTCA
AATGGCTTCGATGGCCAGCCAGGAAGAAGAGGACAAAAAGGTGCTAGTGGCAGATCCAAC
ATACCTGGACCAACCGGTGTGGATGGGCCACCTGGTAAGTGTTTAATGGAAAGAATTAAA
GGAGAGGTCGGCCCACCTGGTTTATTTGGTGAGTCAGGACCGTTTGGACCAAAGGGCATG
CGTGGAAACCCAGGTCCAGTTGGATTCGAGGGTAAACCAGGACCTCCTGGAGAGCAAGGT
TTGCCAGGATTGCTGGGGGAAAAGGGAGAAGAAGGTGTTCCAGGAGTTACTGGCCTTCCT
GGTCGGCAAGGTGAAAAGGGAGAGAATGGAGAGCCTGGACTTGTTGGTTTGTCTGGAGTG
AAAGGAAACCAGGGGTTCCCAGGAATCACTGGTAAACCTGGATTCCCTGGTTTAGTTGGT
GAGCCAGGTATAAAGGGGGAACCAGGCCGATCTATTGAACCAAGTGAACTTGTTACTGGA
CCGAAGGGTAATATGGGGGTACCTGGCTTGCCTGGACCACCTGGTTTAATTGGTAGATCT
GGCCTTCCGGGTCTACAGGGATTTAAGGGTGATCAAGGCGAAAGAGGATTGGATGGCCGT
GATGGAATCCCTGGGACACATGGACAAAGAGGAAATCCTGGCCCACAAGGCTTCATTGGA
CCAAAAGGAAGAGCAGGTAGAAATGGAAATCCAGGCCGAGCTGGCGAACCTGGACCTGCT
GGACGTGTTCGACCCCCCGGGCATCTTATCGTTAAACACAGTCAAACTGTAGATGTACCA
GAATGCCCCGCCGGTATGACGAAACTTTGGGATGGCTACAGTTTATTGTATCTGGAAGGA
AGTGAAAAAGCTCACGGACAAGATCTAGGGGGTGCAGGGTCTTGCATGCCACGGTTTAAC
ACGATGCCGTTCCTCTACTGCAACACACAAAGTGTGTGCAAATATGGCAGCAGAAACGAC
AAGTCTTACTGGCTCTCAACCACAGCTGCTATTCCAATGATGCCAGTCAACGTTGACATG
GTTCAAGAATACATCAGTCGTTGCTCAGTTTGTGAGTCATCTTCCATCGCCATGGCAGTG
CACAGTCAAGATATGGTGATACCACCTTGTCCAGAAGGGTGGAGTGGTGTATGGCTGGGC
TACAGTTTTGCAATGCACACTGCTGCTGGTGCTGAAGGCGGTGGCCAGTCGCTGTCTAGC
CCTGGATCTTGCTTGCAGGATTTCCGCGCGACGCCTTTCATTGAATGCAATGGTGCTCGC
GGCCACTGCTTCTTTTACAACAACCAATACAGTTTCTGGTTAACTACGATCCCACAAGAT
TATCAATTCGGAACTCCTCAAATGGAGACTCTAAAGGCAGGAAACTTAAGAACAAGGGTT
AGCCGTTGCCAAGTCTGTACAAGGTTGAATTTGTGATCATTGAAACTTTTCCTATATTTT
TCGTTTGCTAACGAGGTTAAGACCACCAAAGAACAAGTACGATTCACATGTATGCCTTGT
AGCCAACAATCATTGCATTTTACCCTGTACGCCATTCAGCATATTGTTTACATAAGTTGG
TTTCATTTTGTGTGTATCTCGCCGATGTCCTAGAATTACTTCAGGGCAAAAGCATTTAAC
TAATACCATTCACCGAGAATGAAGCAGTATTTAGCACCGTACAGCATACTTACAGTGTTT
GTCCTTTGTGTACATAATGTGATTTTTTTACTGTTACATCATTTATATGTTTATAGCAAA
TCTTTCCTCTTTCTGAAATTTCCAAATGGTCCTGTTAAAAATGACTCTTGAAAGTGCCTT
ACCTTAAATTCAACCATGAAAAAACAAGTTTATTTAACGGTCCTGGTAGTTTAATTCAAC
GGCTTTCTTTCAATTTAACATTATAATCTTACGGTCATCCAAACTACAACTACATCCTGT
AAATGTGGTTACTCTTGCATTCTAGTG
| Pfam |
Collagen (IPR008160) - T[21-78] 1.1E-8 - T[75-133] 3.2E-9 - T[145-196] 1.0E-7 - T[234-291] 8.2E-8 - T[476-535] 3.4E-7 - T[648-694] 1.1E-6 - T[685-740] 9.1E-7 - T[744-802] 7.3E-9 - T[783-840] 8.6E-8 - T[848-901] 1.4E-8 - T[894-949] 4.9E-7 - T[959-1016] 3.6E-7 - T[1006-1055] 4.9E-7 - T[1054-1112] 3.8E-9 - T[1224-1281] 1.2E-8 - T[1269-1328] 8.8E-10 - T[1340-1397] 1.3E-8 - T[1364-1422] 1.1E-8 |
| Gene3D |
Collagen_IV_NC_sf (IPR036954) - T[1424-1649] 1.1E-108 |
| SMART |
Collagen_IV_NC (IPR001442) - T[1427-1534] 3.3E-57 - T[1535-1649] 3.0E-64 |
| ProSiteProfiles |
Collagen_IV_NC (IPR001442) - T[1427-1650] 110.71 |
| SUPERFAMILY |
CTDL_fold (IPR016187) - T[1429-1535] 8.71E-42 - T[1536-1647] 4.71E-42 |
| Pfam |
Collagen_IV_NC (IPR001442) - T[1429-1532] 1.5E-35 - T[1537-1647] 4.4E-41 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| CO4A2_HUMAN | 45.429 % | 605 | 0 |
| CO4A1_HUMAN | 39.765 % | 561 | 3.83E-171 |
| CO4A6_HUMAN | 45.105 % | 762 | 0 |