- Clone 'CCTU15025' >
- Clone 'cien222568' >
- Transcript 'Cisavi.CG.ENS81.R30....'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R30.1983319-1996169.07572.t
Possible name(s)
COL4A1; COL4A2; COL4A6
Gene model
Location
R30 [1,983,319 / 1,995,252]
Amino acid sequence
Length: 1,684
>Cisavi.CG.ENS81.R30.1983319-1996169.07572.p
RDCSKLGKCGFCVSEKGRRGPPGIQGKAGPQGQLGFPGPEGVMGPKGYAGLAGRPGKAGE
KGDRGTIGVPGYSGINGVPGHPGEPGPRGFPGKDGCNGTDGDSGAAGSPGFNGVDGIPGD
AGPKGSKGEPAFVSVEDMIKGERGESGRLGPKGPSGTPGRSGLIGPKGYPGKPGPPGKPG
LKGSRGPQGHKGIGYQGETGAKGESGPPGLPGSPGFLTGQPDSQFTPIPGPPGRNGSKGM
RGEKGVRGETGYPGFEGAKGREGEKGEKGVRGLAGGRGPTGAAGVNGYDGAQGERGMTGR
PGIDGTIGMKGERGDQGPIGAPGLPGLQGLQGPIGSPGAPGEAGVPGPTGSNGQPGVNGF
DGPSGEDGLAGNPGLPGNPGLPGVGEKGEIGIRGLNGKNGQDGVPGLSGEQGPRGLPGVS
GETIPGENGRDGPPGQTGAPGQSGSRGAPGEPGHIIMLDGDKMVGPQGSPGIAGLRGEKG
LRGVNGVDGSVGQKGEKGGECDCQDAVGETGSPGPPGQDGLPGLSGLPGISGQSGEPGEP
GEPGPNGPRGLDGQKGKSGETGPKGQKGESATLEGEVKGEKGELGLPGGQGEPGIAGIPG
QDGRNGRRGAQGEKGEVGPQGMPGLPGLKGFEGPKGREGRSGQDAFGIPGPLGFKGEKGD
EGFQGPNGFRGQKGEAGESIYGAAPKGDKGENGQSGGRGYPGAKGSKGSRGEPGPEGLTG
DDGEKGNVGEPGLPALPGAPGRKGEAGLPGQVGLPGDQGERGRTGEVGMKGPQGKPGLSI
PGNPGQKGANGNDGLPGATGSKGSQGFPGLVGLPGPPGFPGLEGTPGLRGLPGADGLAES
ALVGRRGPPGPTGSDGVAGPRGSIGRKGEVGPPGLPASGELKGEKGQIGLSGRDGQLGVK
GDKGSTGIPGETGLPGPPGEDGFPGAPGRPGARGKNGRSGPKGNGGLAGLPGFDGMPGKP
GATGPQGFKGEKGSVPPGAQIQVPAGEPGEAGPPGEPGVQDGPKGEGGKPGIKGMVGDAG
PPGDYGRNGLPGVEGQKGVKGARGQLGFPGVIGKPGIAGQPGRAGLPGPVGLKGQKGMVG
ERGPDGRPGREGRPGLNGENGPKGLQGRRGLPGLSGLDGQPGQKGSMGINGKTGVIGMKG
GRGLPGLDGRDGLNGEPGTKGRAGTKGEDGIPGSNGFDGQPGRRGQKGASGRSNIPGPTG
VDGPPGKCLMESPVGFEGKPGPPGEQGLPGLLGEKGEEGVPGVTGLPGLPGREGSPGFSG
RQGAPGIKGLPGLPGESGLDGLPGRQGDVGPSGSTGQTGPKGEKGENGEPGLVGLSGVKG
NQGFPGITGKPGFPGLVGEPGIKGEPGRSIEPSELVTGPKGNMGVPGLPGPPGLIGRSGL
PGLQGFKGDQGERGLDGRDGIPGTHGQRGNPGPQGFIGPKGRAGTQPIILFGAFIQNHKF
PGRNGNPGRAGEPGPAGRVRPPGHLIVKHSQTVDVPECPAGMTKLWDGYSLLYLEGSEKA
HGQDLGGAGSCMPRFNTMPFLYCNTQSVCKYGSRNDKSYWLSTTAAIPMMPVNVDMVQEY
ISRCSVCESSSIAMAVHSQDMVIPPCPEGWSGVWLGYSFAMHTAAGAEGGGQSLSSPGSC
LQDFRATPFIECNGARGHCFFYNNQYSFWLTTIPQDYQFGTPQMETLKAGNLRTRVSRCQ
VCTR
Nucleotide sequence
Length: 5,594
>Cisavi.CG.ENS81.R30.1983319-1996169.07572.t
CGCGACTGTTCCAAACTCGGAAAATGTGGATTCTGCGTATCAGAGAAGGGTCGAAGGGGA
CCCCCTGGTATTCAAGGCAAAGCAGGTCCTCAGGGACAGCTTGGTTTCCCGGGTCCTGAA
GGTGTTATGGGACCGAAAGGATACGCTGGTCTTGCTGGAAGACCTGGTAAAGCTGGAGAG
AAGGGAGATAGGGGGACAATCGGTGTACCAGGGTATTCAGGTATCAATGGAGTGCCTGGT
CACCCTGGAGAGCCTGGTCCAAGAGGTTTCCCAGGTAAAGATGGTTGCAATGGAACAGAT
GGTGACAGTGGTGCAGCTGGTTCACCTGGTTTTAATGGGGTTGATGGAATACCGGGAGAT
GCTGGACCTAAGGGCTCAAAGGGAGAGCCAGCTTTTGTAAGTGTGGAAGACATGATTAAA
GGAGAAAGGGGTGAAAGTGGTCGGCTTGGACCTAAAGGACCTTCTGGTACCCCTGGAAGA
TCTGGTCTTATTGGCCCCAAGGGTTACCCTGGCAAGCCAGGACCACCTGGTAAACCTGGA
CTCAAAGGTAGCAGAGGACCTCAAGGCCATAAAGGGATCGGTTACCAGGGCGAAACTGGA
GCCAAGGGTGAATCTGGGCCTCCTGGTTTGCCTGGAAGTCCTGGATTTTTAACTGGTCAG
CCAGACAGCCAGTTCACACCAATTCCAGGACCACCGGGAAGAAATGGTTCCAAGGGAATG
AGAGGAGAGAAAGGTGTACGTGGAGAAACAGGATATCCAGGATTCGAGGGTGCCAAAGGT
AGAGAAGGGGAAAAAGGGGAGAAAGGAGTGCGTGGTTTGGCTGGAGGTCGTGGGCCAACT
GGAGCTGCAGGCGTAAATGGATATGATGGTGCACAGGGTGAGCGTGGTATGACAGGGAGG
CCTGGCATTGATGGCACGATTGGTATGAAGGGCGAACGTGGTGATCAAGGCCCAATAGGA
GCTCCAGGGTTACCGGGTCTACAGGGACTACAAGGGCCGATAGGATCACCTGGTGCTCCG
GGCGAAGCCGGCGTGCCAGGGCCAACGGGGTCCAACGGCCAACCTGGTGTTAATGGATTC
GATGGTCCTTCCGGGGAAGACGGTCTTGCAGGAAATCCTGGTCTTCCTGGGAATCCAGGT
TTACCTGGTGTTGGAGAAAAGGGAGAGATAGGAATTAGAGGTTTAAATGGAAAGAATGGG
CAAGATGGCGTCCCTGGTCTTAGTGGGGAACAAGGTCCAAGAGGACTGCCAGGAGTATCT
GGAGAAACCATTCCTGGGGAAAATGGAAGAGACGGCCCTCCTGGACAAACTGGGGCCCCA
GGGCAGTCTGGGTCCAGAGGTGCACCTGGTGAACCTGGTCATATTATCATGCTGGACGGG
GACAAGATGGTCGGGCCACAAGGATCACCTGGGATCGCTGGTTTGCGAGGAGAAAAGGGC
CTTCGAGGTGTAAATGGTGTGGATGGATCTGTTGGACAGAAAGGAGAAAAAGGAGGGGAA
TGTGACTGTCAAGATGCAGTTGGAGAGACAGGTAGTCCTGGTCCACCTGGACAGGATGGT
CTGCCTGGTTTATCTGGTCTACCGGGTATCAGTGGCCAATCTGGTGAGCCTGGTGAGCCA
GGAGAACCTGGACCTAATGGACCAAGGGGATTAGATGGACAAAAAGGAAAATCTGGCGAG
ACTGGGCCAAAAGGCCAGAAAGGAGAATCTGCAACTTTAGAAGGGGAGGTCAAGGGCGAA
AAAGGTGAACTTGGTCTGCCTGGTGGACAAGGAGAACCAGGAATCGCTGGAATTCCTGGA
CAAGATGGAAGAAATGGCCGCCGAGGCGCACAAGGAGAAAAGGGAGAAGTTGGACCACAA
GGAATGCCAGGTCTACCTGGTTTGAAAGGATTTGAAGGCCCTAAGGGAAGAGAGGGAAGA
TCTGGTCAAGATGCATTTGGGATACCTGGTCCACTTGGTTTTAAGGGAGAAAAGGGAGAT
GAAGGATTCCAAGGTCCAAATGGATTCAGAGGACAAAAGGGAGAGGCTGGAGAATCAATA
TATGGGGCTGCTCCAAAGGGAGATAAAGGAGAAAATGGGCAATCAGGTGGACGTGGGTAT
CCTGGAGCTAAAGGTTCCAAAGGATCACGCGGAGAGCCAGGGCCAGAAGGCCTTACTGGG
GATGATGGAGAAAAGGGAAATGTTGGAGAACCAGGCTTGCCGGCGTTACCTGGTGCACCA
GGTAGAAAGGGTGAAGCAGGTCTTCCTGGTCAAGTTGGTTTACCTGGAGATCAGGGTGAA
AGGGGGCGAACAGGAGAAGTTGGTATGAAAGGACCTCAAGGGAAACCTGGATTGTCCATA
CCAGGGAACCCAGGTCAGAAAGGGGCTAACGGCAACGATGGCCTACCTGGTGCAACTGGG
TCTAAGGGAAGCCAAGGGTTCCCAGGTTTGGTCGGTCTCCCTGGTCCCCCTGGATTTCCT
GGTTTGGAGGGAACACCTGGATTAAGAGGGTTGCCTGGAGCAGATGGATTGGCAGAATCT
GCCCTTGTTGGGAGAAGAGGCCCACCAGGACCAACTGGTTCAGATGGTGTCGCTGGACCT
CGGGGATCTATTGGACGCAAAGGGGAGGTTGGGCCACCGGGTCTTCCAGCTAGTGGGGAG
CTAAAGGGAGAAAAGGGACAAATTGGACTAAGTGGAAGAGATGGTCAACTTGGTGTCAAA
GGCGACAAAGGATCAACTGGAATACCTGGTGAAACTGGGCTTCCTGGACCACCTGGTGAA
GATGGTTTCCCTGGAGCTCCAGGGCGACCTGGGGCAAGAGGAAAAAATGGAAGATCCGGG
CCAAAGGGCAACGGTGGCTTAGCTGGCCTACCAGGGTTTGATGGAATGCCTGGAAAGCCT
GGTGCCACCGGTCCTCAAGGGTTTAAAGGAGAAAAGGGATCTGTCCCCCCTGGTGCCCAG
ATTCAGGTGCCAGCTGGGGAACCAGGAGAGGCAGGACCACCTGGAGAGCCTGGTGTTCAG
GATGGGCCAAAGGGTGAAGGTGGTAAACCTGGAATCAAAGGAATGGTTGGAGATGCAGGT
CCTCCAGGTGATTATGGAAGGAATGGCTTGCCAGGAGTTGAGGGGCAAAAGGGAGTAAAA
GGAGCACGGGGGCAGCTTGGCTTCCCAGGAGTCATCGGAAAACCGGGAATTGCTGGACAA
CCGGGAAGAGCTGGCTTACCAGGACCGGTTGGTCTCAAAGGACAGAAAGGCATGGTTGGT
GAACGCGGTCCTGATGGTAGACCTGGTCGTGAAGGTAGGCCCGGTCTAAATGGAGAAAAT
GGTCCAAAGGGTTTGCAAGGACGAAGAGGGTTACCTGGTCTTAGTGGATTGGATGGCCAA
CCCGGTCAAAAGGGCAGTATGGGCATTAATGGAAAAACAGGTGTAATAGGAATGAAAGGG
GGCCGTGGTTTGCCAGGTTTGGATGGTAGAGATGGCTTGAATGGTGAACCAGGCACAAAA
GGAAGGGCTGGAACTAAAGGTGAGGATGGGATCCCTGGTTCAAATGGCTTCGATGGCCAG
CCAGGAAGAAGAGGACAAAAAGGTGCTAGTGGCAGATCCAACATACCTGGACCAACCGGT
GTGGATGGGCCACCTGGTAAGTGTTTAATGGAAAGTCCAGTTGGATTCGAGGGTAAACCA
GGACCTCCTGGAGAGCAAGGTTTGCCAGGATTGCTGGGGGAAAAGGGAGAAGAAGGTGTT
CCAGGAGTTACTGGCCTTCCTGGTTTGCCTGGGAGAGAGGGCTCACCTGGATTCAGTGGG
CGGCAAGGTGCACCTGGAATCAAAGGTTTGCCTGGATTGCCGGGAGAGAGTGGCCTTGAT
GGACTTCCTGGCAGACAAGGCGATGTTGGACCATCTGGCTCCACTGGACAAACTGGACCT
AAAGGTGAAAAGGGAGAGAATGGAGAGCCTGGACTTGTTGGTTTGTCTGGAGTGAAAGGA
AACCAGGGGTTCCCAGGAATCACTGGTAAACCTGGATTCCCTGGTTTAGTTGGTGAGCCA
GGTATAAAGGGGGAACCAGGCCGATCTATTGAACCAAGTGAACTTGTTACTGGACCGAAG
GGTAATATGGGGGTACCTGGCTTGCCTGGACCACCTGGTTTAATTGGTAGATCTGGCCTT
CCGGGTCTACAGGGATTTAAGGGTGATCAAGGCGAAAGAGGATTGGATGGCCGTGATGGA
ATCCCTGGGACACATGGACAAAGAGGAAATCCTGGCCCACAAGGCTTCATTGGACCAAAA
GGAAGAGCAGGTACACAACCCATCATTCTTTTTGGTGCATTTATTCAAAATCATAAATTT
CCAGGTAGAAATGGAAATCCAGGCCGAGCTGGCGAACCTGGACCTGCTGGACGTGTTCGA
CCCCCCGGGCATCTTATCGTTAAACACAGTCAAACTGTAGATGTACCAGAATGCCCCGCC
GGTATGACGAAACTTTGGGATGGCTACAGTTTATTGTATCTGGAAGGAAGTGAAAAAGCT
CACGGACAAGATCTAGGGGGTGCAGGGTCTTGCATGCCACGGTTTAACACGATGCCGTTC
CTCTACTGCAACACACAAAGTGTGTGCAAATATGGCAGCAGAAACGACAAGTCTTACTGG
CTCTCAACCACAGCTGCTATTCCAATGATGCCAGTCAACGTTGACATGGTTCAAGAATAC
ATCAGTCGTTGCTCAGTTTGTGAGTCATCTTCCATCGCCATGGCAGTGCACAGTCAAGAT
ATGGTGATACCACCTTGTCCAGAAGGGTGGAGTGGTGTATGGCTGGGCTACAGTTTTGCA
ATGCACACTGCTGCTGGTGCTGAAGGCGGTGGCCAGTCGCTGTCTAGCCCTGGATCTTGC
TTGCAGGATTTCCGCGCGACGCCTTTCATTGAATGCAATGGTGCTCGCGGCCACTGCTTC
TTTTACAACAACCAATACAGTTTCTGGTTAACTACGATCCCACAAGATTATCAATTCGGA
ACTCCTCAAATGGAGACTCTAAAGGCAGGAAACTTAAGAACAAGGGTTAGCCGTTGCCAA
GTCTGTACAAGGTTGAATTTGTGATCATTGAAACTTTTCCTATATTTTTCGTTTGCTAAC
GAGGTTAAGACCACCAAAGAACAAGTACGATTCACATGTATGCCTTGTAGCCAACAATCA
TTGCATTTTACCCTGTACGCCATTCAGCATATTGTTTACATAAGTTGGTTTCATTTTGTG
TGTATCTCGCCGATGTCCTAGAATTACTTCAGGGCAAAAGCATTTAACTAATACCATTCA
CCGAGAATGAAGCAGTATTTAGCACCGTACAGCATACTTACAGTGTTTGTCCTTTGTGTA
CATAATGTGATTTTTTTACTGTTACATCATTTATATGTTTATAGCAAATCTTTCCTCTTT
CTGAAATTTCCAAATGGTCCTGTTAAAAATGACTCTTGAAAGTGCCTTACCTTAAATTCA
ACCATGAAAAAACAAGTTTATTTAACGGTCCTGGTAGTTTAATTCAACGGCTTTCTTTCA
ATTTAACATTATAATCTTACGGTCATCCAAACTACAACTACATCCTGTAAATGTGGTTAC
TCTTGCATTCTAGT
| Pfam |
Collagen (IPR008160) - T[17-74] 1.0E-8 - T[71-129] 3.1E-9 - T[141-192] 2.0E-7 - T[230-287] 3.7E-8 - T[284-341] 4.8E-7 - T[326-383] 2.1E-8 - T[510-566] 3.6E-9 - T[582-637] 2.5E-7 - T[618-678] 1.0E-6 - T[686-738] 1.7E-6 - T[782-837] 1.7E-9 - T[882-935] 5.3E-8 - T[1256-1311] 7.2E-7 |
| Gene3D |
Collagen_IV_NC_sf (IPR036954) - T[1460-1684] 1.8E-108 |
| ProSiteProfiles |
Collagen_IV_NC (IPR001442) - T[1463-1684] 111.565 |
| SMART |
Collagen_IV_NC (IPR001442) - T[1463-1570] 3.3E-57 - T[1571-1684] 5.6E-62 |
| Pfam |
Collagen_IV_NC (IPR001442) - T[1465-1568] 1.6E-35 - T[1573-1683] 4.5E-41 |
| SUPERFAMILY |
CTDL_fold (IPR016187) - T[1465-1571] 8.95E-42 - T[1572-1683] 6.59E-42 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| CO4A2_HUMAN | 46.348 % | 598 | 0 |
| CO4A1_HUMAN | 39.961 % | 580 | 7.88E-178 |
| CO4A6_HUMAN | 41.482 % | 660 | 0 |