- Transcript 'KH2012:KH.C14.172.v1...' >
- Clone 'cscl008b12' >
- Transcript 'Cisavi.CG.ENS81.R30....'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R30.1983319-1996169.07573.t
Possible name(s)
COL4A1; COL4A2; COL4A6
Gene model
Location
R30 [1,983,319 / 1,995,222]
Amino acid sequence
Length: 1,614
>Cisavi.CG.ENS81.R30.1983319-1996169.07573.p
FCVSEKGRRGPPGIQGKAGPQGQLGFPGPEGVMGPKGYAGLAGRPGKAGEKGDRGTIGVP
GYSGINGVPGHPGEPGPRGFPGKDGCNGTDGDSGAAGSPGFNGVDGIPGDAGPKGSKGEP
AFVSVEDMIKGERGESGRLGPKGPSGTPGRSGLIGPKGYPGKPGPPGKPGLKGSRGPQGH
KGIGYQGETGAKGESGPPGLPGNSQFTPIPGPPGRNGSKGMRGEKGVRGETGYPGFEGAK
GREGEKGEKGVRGLAGGRGPTGAAGVNGYDGAQGERGMTGRPGIDGTIGMKGERGDQGPI
GAPGLPGPIGSPGAPGEAGVPGPTGSNGQPGVNGFDGPSGEDGLAGNPGLPGNPGLPGVG
EKGEIGIRGNIANGQDGVPGLSGEQGPRGLPGVSGETIPGENGRDGPPGQTGAPGQSGSR
GAPGEPGHIIMLDGDKMVGPQGSPGIAGLRGEKGLREKGGECDCQDAVGETGSPGPPGQD
GLPGLSGLPGISGQSGEPGEPGEPGPNGPRGLDGQKGKSGETGPKGQKGESATLEGEVKG
EKGELGLPGGQGEPGIAGIPGQDGRNGRRGAQGEKGEVGPQGMPGLPGLKGFEGPKGREG
RSGQDAFGIPGPLGFKGEKGDEGFQESIYGAAPKGDKGENGQSGGRGYPGAKGSKGSRGE
PGPEGLTGDDGEKGNVGEPGLPALPGAPGRSFSGLPGQVGLPGDQGERGRTGEVGMKGPQ
GKPGLSIPGNPGQKGANGNDGLPGATGSKGSQGFPGLVGLPGPPGFPGLEGTPGLRGLPG
ADGLAGEKGESALVGRRGPPGPTGSDGVAGPRGSIGRKGEVGPPGLPASGELKGEKGQIG
LSGRDGSTGIPGETGLPGPPGEDGFPGAPGRPGARGKNGRSGPKGNGGLAGLPGFDGMPG
LSGNKGSPGKPGATGPQGFKGEKGSVPPGAQIQVPAGEPGEAGPPGEPDGPKGEGGKPGI
KGMVGDAGPPGDYGRNGLPGVEGQKGVKGARGQLGFPGVIGKPGIAGQPGRAGLPGPVGL
KGQKGIATFLYYSGMVGERGPDGRPGREGRPGLNGENGPKGLQGRRGLPGLSGLDGQPGQ
KGSVIGMKGGRGLPGLDGRDGLNGEPGTKGRAGTKGEDGIPGSNGFDGQPGRRGQKGASG
RSNIPGPTEVGPPGLFGESGPFGPKGMRGNPGPVGFEGKPGPPGEQGLPGLLGEKGEEGV
PGVTGLPGAPGIKGLPGLPGESGLDGLPGRQGDVGPSGSTGQTGPKGEKGENGEPGLVGL
SGVKGNQGFPGITGKPGFPGLVGEPGIKGEPGRSIEPSELVTGPKGNMGVPGLPGPPGLI
GRSGLPGLQGFKGDQGERGLDGRDGIPGTHGQRGNPGPQGFIGPKGRAGRNGNPGRAGEP
GPAGRVRPPGHLIVKHSQTVDVPECPAGMTKLWDGYSLLYLEGSEKAHGQDLGGAGSCMP
RFNTMPFLYCNTQSVCKYGSRNDKSYWLSTTAAIPMMPVNVDMVQEYISRCSVCESSSIA
MAVHSQDMVIPPCPEGWSGVWLGYSFAMHTAAGAEGGGQSLSSPGSCLQDFRATPFIECN
GARGHCFFYNNQYSFWLTTIPQDYQFGTPQMETLKAGNLRTRVSRCQVCTRLNL
Nucleotide sequence
Length: 5,375
>Cisavi.CG.ENS81.R30.1983319-1996169.07573.t
TTCTGCGTATCAGAGAAGGGTCGAAGGGGACCCCCTGGTATTCAAGGCAAAGCAGGTCCT
CAGGGACAGCTTGGTTTCCCGGGTCCTGAAGGTGTTATGGGACCGAAAGGATACGCTGGT
CTTGCTGGAAGACCTGGTAAAGCTGGAGAGAAGGGAGATAGGGGGACAATCGGTGTACCA
GGGTATTCAGGTATCAATGGAGTGCCTGGTCACCCTGGAGAGCCTGGTCCAAGAGGTTTC
CCAGGTAAAGATGGTTGCAATGGAACAGATGGTGACAGTGGTGCAGCTGGTTCACCTGGT
TTTAATGGGGTTGATGGAATACCGGGAGATGCTGGACCTAAGGGCTCAAAGGGAGAGCCA
GCTTTTGTAAGTGTGGAAGACATGATTAAAGGAGAAAGGGGTGAAAGTGGTCGGCTTGGA
CCTAAAGGACCTTCTGGTACCCCTGGAAGATCTGGTCTTATTGGCCCCAAGGGTTACCCT
GGCAAGCCAGGACCACCTGGTAAACCTGGACTCAAAGGTAGCAGAGGACCTCAAGGCCAT
AAAGGGATCGGTTACCAGGGCGAAACTGGAGCCAAGGGTGAATCTGGGCCTCCTGGTTTG
CCTGGAAACAGCCAGTTCACACCAATTCCAGGACCACCGGGAAGAAATGGTTCCAAGGGA
ATGAGAGGAGAGAAAGGTGTACGTGGAGAAACAGGATATCCAGGATTCGAGGGTGCCAAA
GGTAGAGAAGGGGAAAAAGGGGAGAAAGGAGTGCGTGGTTTGGCTGGAGGTCGTGGGCCA
ACTGGAGCTGCAGGCGTAAATGGATATGATGGTGCACAGGGTGAGCGTGGTATGACAGGG
AGGCCTGGCATTGATGGCACGATTGGTATGAAGGGCGAACGTGGTGATCAAGGCCCAATA
GGAGCTCCAGGGTTACCGGGGCCGATAGGATCACCTGGTGCTCCGGGCGAAGCCGGCGTG
CCAGGGCCAACGGGGTCCAACGGCCAACCTGGTGTTAATGGATTCGATGGTCCTTCCGGG
GAAGACGGTCTTGCAGGAAATCCTGGTCTTCCTGGGAATCCAGGTTTACCTGGTGTTGGA
GAAAAGGGAGAGATAGGAATTAGAGGTAATATTGCAAATGGGCAAGATGGCGTCCCTGGT
CTTAGTGGGGAACAAGGTCCAAGAGGACTGCCAGGAGTATCTGGAGAAACCATTCCTGGG
GAAAATGGAAGAGACGGCCCTCCTGGACAAACTGGGGCCCCAGGGCAGTCTGGGTCCAGA
GGTGCACCTGGTGAACCTGGTCATATTATCATGCTGGACGGGGACAAGATGGTCGGGCCA
CAAGGATCACCTGGGATCGCTGGTTTGCGAGGAGAAAAGGGCCTTCGAGAAAAAGGAGGG
GAATGTGACTGTCAAGATGCAGTTGGAGAGACAGGTAGTCCTGGTCCACCTGGACAGGAT
GGTCTGCCTGGTTTATCTGGTCTACCGGGTATCAGTGGCCAATCTGGTGAGCCTGGTGAG
CCAGGAGAACCTGGACCTAATGGACCAAGGGGATTAGATGGACAAAAAGGAAAATCTGGC
GAGACTGGGCCAAAAGGCCAGAAAGGAGAATCTGCAACTTTAGAAGGGGAGGTCAAGGGC
GAAAAAGGTGAACTTGGTCTGCCTGGTGGACAAGGAGAACCAGGAATCGCTGGAATTCCT
GGACAAGATGGAAGAAATGGCCGCCGAGGCGCACAAGGAGAAAAGGGAGAAGTTGGACCA
CAAGGAATGCCAGGTCTACCTGGTTTGAAAGGATTTGAAGGCCCTAAGGGAAGAGAGGGA
AGATCTGGTCAAGATGCATTTGGGATACCTGGTCCACTTGGTTTTAAGGGAGAAAAGGGA
GATGAAGGATTCCAAGAATCAATATATGGGGCTGCTCCAAAGGGAGATAAAGGAGAAAAT
GGGCAATCAGGTGGACGTGGGTATCCTGGAGCTAAAGGTTCCAAAGGATCACGCGGAGAG
CCAGGGCCAGAAGGCCTTACTGGGGATGATGGAGAAAAGGGAAATGTTGGAGAACCAGGC
TTGCCGGCGTTACCTGGTGCACCAGGTAGGTCATTTTCAGGTCTTCCTGGTCAAGTTGGT
TTACCTGGAGATCAGGGTGAAAGGGGGCGAACAGGAGAAGTTGGTATGAAAGGACCTCAA
GGGAAACCTGGATTGTCCATACCAGGGAACCCAGGTCAGAAAGGGGCTAACGGCAACGAT
GGCCTACCTGGTGCAACTGGGTCTAAGGGAAGCCAAGGGTTCCCAGGTTTGGTCGGTCTC
CCTGGTCCCCCTGGATTTCCTGGTTTGGAGGGAACACCTGGATTAAGAGGGTTGCCTGGA
GCAGATGGATTGGCAGGGGAAAAAGGAGAATCTGCCCTTGTTGGGAGAAGAGGCCCACCA
GGACCAACTGGTTCAGATGGTGTCGCTGGACCTCGGGGATCTATTGGACGCAAAGGGGAG
GTTGGGCCACCGGGTCTTCCAGCTAGTGGGGAGCTAAAGGGAGAAAAGGGACAAATTGGA
CTAAGTGGAAGAGATGGATCAACTGGAATACCTGGTGAAACTGGGCTTCCTGGACCACCT
GGTGAAGATGGTTTCCCTGGAGCTCCAGGGCGACCTGGGGCAAGAGGAAAAAATGGAAGA
TCCGGGCCAAAGGGCAACGGTGGCTTAGCTGGCCTACCAGGGTTTGATGGAATGCCTGGT
CTATCTGGAAACAAAGGGTCTCCAGGAAAGCCTGGTGCCACCGGTCCTCAAGGGTTTAAA
GGAGAAAAGGGATCTGTCCCCCCTGGTGCCCAGATTCAGGTGCCAGCTGGGGAACCAGGA
GAGGCAGGACCACCTGGAGAGCCTGATGGGCCAAAGGGTGAAGGTGGTAAACCTGGAATC
AAAGGAATGGTTGGAGATGCAGGTCCTCCAGGTGATTATGGAAGGAATGGCTTGCCAGGA
GTTGAGGGGCAAAAGGGAGTAAAAGGAGCACGGGGGCAGCTTGGCTTCCCAGGAGTCATC
GGAAAACCGGGAATTGCTGGACAACCGGGAAGAGCTGGCTTACCAGGACCGGTTGGTCTC
AAAGGACAGAAAGGCATTGCTACGTTTCTTTATTATTCAGGCATGGTTGGTGAACGCGGT
CCTGATGGTAGACCTGGTCGTGAAGGTAGGCCCGGTCTAAATGGAGAAAATGGTCCAAAG
GGTTTGCAAGGACGAAGAGGGTTACCTGGTCTTAGTGGATTGGATGGCCAACCCGGTCAA
AAGGGCAGTGTAATAGGAATGAAAGGGGGCCGTGGTTTGCCAGGTTTGGATGGTAGAGAT
GGCTTGAATGGTGAACCAGGCACAAAAGGAAGGGCTGGAACTAAAGGTGAGGATGGGATC
CCTGGTTCAAATGGCTTCGATGGCCAGCCAGGAAGAAGAGGACAAAAAGGTGCTAGTGGC
AGATCCAACATACCTGGACCAACCGAGGTCGGCCCACCTGGTTTATTTGGTGAGTCAGGA
CCGTTTGGACCAAAGGGCATGCGTGGAAACCCAGGTCCAGTTGGATTCGAGGGTAAACCA
GGACCTCCTGGAGAGCAAGGTTTGCCAGGATTGCTGGGGGAAAAGGGAGAAGAAGGTGTT
CCAGGAGTTACTGGCCTTCCTGGTGCACCTGGAATCAAAGGTTTGCCTGGATTGCCGGGA
GAGAGTGGCCTTGATGGACTTCCTGGCAGACAAGGCGATGTTGGACCATCTGGCTCCACT
GGACAAACTGGACCTAAAGGTGAAAAGGGAGAGAATGGAGAGCCTGGACTTGTTGGTTTG
TCTGGAGTGAAAGGAAACCAGGGGTTCCCAGGAATCACTGGTAAACCTGGATTCCCTGGT
TTAGTTGGTGAGCCAGGTATAAAGGGGGAACCAGGCCGATCTATTGAACCAAGTGAACTT
GTTACTGGACCGAAGGGTAATATGGGGGTACCTGGCTTGCCTGGACCACCTGGTTTAATT
GGTAGATCTGGCCTTCCGGGTCTACAGGGATTTAAGGGTGATCAAGGCGAAAGAGGATTG
GATGGCCGTGATGGAATCCCTGGGACACATGGACAAAGAGGAAATCCTGGCCCACAAGGC
TTCATTGGACCAAAAGGAAGAGCAGGTAGAAATGGAAATCCAGGCCGAGCTGGCGAACCT
GGACCTGCTGGACGTGTTCGACCCCCCGGGCATCTTATCGTTAAACACAGTCAAACTGTA
GATGTACCAGAATGCCCCGCCGGTATGACGAAACTTTGGGATGGCTACAGTTTATTGTAT
CTGGAAGGAAGTGAAAAAGCTCACGGACAAGATCTAGGGGGTGCAGGGTCTTGCATGCCA
CGGTTTAACACGATGCCGTTCCTCTACTGCAACACACAAAGTGTGTGCAAATATGGCAGC
AGAAACGACAAGTCTTACTGGCTCTCAACCACAGCTGCTATTCCAATGATGCCAGTCAAC
GTTGACATGGTTCAAGAATACATCAGTCGTTGCTCAGTTTGTGAGTCATCTTCCATCGCC
ATGGCAGTGCACAGTCAAGATATGGTGATACCACCTTGTCCAGAAGGGTGGAGTGGTGTA
TGGCTGGGCTACAGTTTTGCAATGCACACTGCTGCTGGTGCTGAAGGCGGTGGCCAGTCG
CTGTCTAGCCCTGGATCTTGCTTGCAGGATTTCCGCGCGACGCCTTTCATTGAATGCAAT
GGTGCTCGCGGCCACTGCTTCTTTTACAACAACCAATACAGTTTCTGGTTAACTACGATC
CCACAAGATTATCAATTCGGAACTCCTCAAATGGAGACTCTAAAGGCAGGAAACTTAAGA
ACAAGGGTTAGCCGTTGCCAAGTCTGTACAAGGTTGAATTTGTGATCATTGAAACTTTTC
CTATATTTTTCGTTTGCTAACGAGGTTAAGACCACCAAAGAACAAGTACGATTCACATGT
ATGCCTTGTAGCCAACAATCATTGCATTTTACCCTGTACGCCATTCAGCATATTGTTTAC
ATAAGTTGGTTTCATTTTGTGTGTATCTCGCCGATGTCCTAGAATTACTTCAGGGCAAAA
GCATTTAACTAATACCATTCACCGAGAATGAAGCAGTATTTAGCACCGTACAGCATACTT
ACAGTGTTTGTCCTTTGTGTACATAATGTGATTTTTTTACTGTTACATCATTTATATGTT
TATAGCAAATCTTTCCTCTTTCTGAAATTTCCAAATGGTCCTGTTAAAAATGACTCTTGA
AAGTGCCTTACCTTAAATTCAACCATGAAAAAACAAGTTTATTTAACGGTCCTGGTAGTT
TAATTCAACGGCTTTCTTTCAATTTAACATTATAATCTTACGGTCATCCAAACTACAACT
ACATCCTGTAAATGTGGTTACTCTTGCATTCTAGT
| Pfam |
Collagen (IPR008160) - T[7-64] 1.1E-8 - T[61-119] 3.4E-9 - T[131-182] 7.9E-8 - T[373-427] 4.1E-7 - T[472-527] 2.1E-8 - T[540-591] 3.8E-7 - T[567-624] 1.1E-6 - T[634-689] 2.6E-7 - T[729-787] 6.0E-9 - T[768-825] 7.9E-8 - T[833-886] 9.0E-8 - T[870-925] 5.0E-7 - T[974-1025] 1.3E-7 - T[1034-1082] 4.2E-8 - T[1086-1140] 3.0E-8 - T[1151-1208] 1.4E-8 - T[1199-1255] 2.6E-8 - T[1235-1292] 1.5E-9 - T[1303-1360] 1.3E-8 - T[1327-1385] 1.1E-8 |
| Gene3D |
Collagen_IV_NC_sf (IPR036954) - T[1387-1612] 1.1E-108 |
| ProSiteProfiles |
Collagen_IV_NC (IPR001442) - T[1390-1613] 110.71 |
| SMART |
Collagen_IV_NC (IPR001442) - T[1390-1497] 3.3E-57 - T[1498-1612] 3.0E-64 |
| Pfam |
Collagen_IV_NC (IPR001442) - T[1392-1495] 1.5E-35 - T[1500-1610] 4.3E-41 |
| SUPERFAMILY |
CTDL_fold (IPR016187) - T[1392-1498] 8.48E-42 - T[1499-1610] 4.71E-42 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| CO4A2_HUMAN | 47.554 % | 598 | 0 |
| CO4A1_HUMAN | 40.215 % | 538 | 4.6E-163 |
| CO4A6_HUMAN | 43.533 % | 722 | 0 |