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TRANSCRIPT CARD

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  1. Clone 'cien194124'
  2. Clone 'cieg078m23'
  3. Clone 'AHC0AAA207YB24'
  4. Transcript 'Cisavi.CG.ENS81.R30....'

Transcript Model

Transcript Id

Cisavi.CG.ENS81.R30.1983319-1996169.07573.t

Possible name(s)

COL4A1; COL4A2; COL4A6

Location

R30 [1,983,319 / 1,995,222]

Sequences

Amino acid sequence

Length: 1,614

>Cisavi.CG.ENS81.R30.1983319-1996169.07573.p
FCVSEKGRRGPPGIQGKAGPQGQLGFPGPEGVMGPKGYAGLAGRPGKAGEKGDRGTIGVP
GYSGINGVPGHPGEPGPRGFPGKDGCNGTDGDSGAAGSPGFNGVDGIPGDAGPKGSKGEP
AFVSVEDMIKGERGESGRLGPKGPSGTPGRSGLIGPKGYPGKPGPPGKPGLKGSRGPQGH
KGIGYQGETGAKGESGPPGLPGNSQFTPIPGPPGRNGSKGMRGEKGVRGETGYPGFEGAK
GREGEKGEKGVRGLAGGRGPTGAAGVNGYDGAQGERGMTGRPGIDGTIGMKGERGDQGPI
GAPGLPGPIGSPGAPGEAGVPGPTGSNGQPGVNGFDGPSGEDGLAGNPGLPGNPGLPGVG
EKGEIGIRGNIANGQDGVPGLSGEQGPRGLPGVSGETIPGENGRDGPPGQTGAPGQSGSR
GAPGEPGHIIMLDGDKMVGPQGSPGIAGLRGEKGLREKGGECDCQDAVGETGSPGPPGQD
GLPGLSGLPGISGQSGEPGEPGEPGPNGPRGLDGQKGKSGETGPKGQKGESATLEGEVKG
EKGELGLPGGQGEPGIAGIPGQDGRNGRRGAQGEKGEVGPQGMPGLPGLKGFEGPKGREG
RSGQDAFGIPGPLGFKGEKGDEGFQESIYGAAPKGDKGENGQSGGRGYPGAKGSKGSRGE
PGPEGLTGDDGEKGNVGEPGLPALPGAPGRSFSGLPGQVGLPGDQGERGRTGEVGMKGPQ
GKPGLSIPGNPGQKGANGNDGLPGATGSKGSQGFPGLVGLPGPPGFPGLEGTPGLRGLPG
ADGLAGEKGESALVGRRGPPGPTGSDGVAGPRGSIGRKGEVGPPGLPASGELKGEKGQIG
LSGRDGSTGIPGETGLPGPPGEDGFPGAPGRPGARGKNGRSGPKGNGGLAGLPGFDGMPG
LSGNKGSPGKPGATGPQGFKGEKGSVPPGAQIQVPAGEPGEAGPPGEPDGPKGEGGKPGI
KGMVGDAGPPGDYGRNGLPGVEGQKGVKGARGQLGFPGVIGKPGIAGQPGRAGLPGPVGL
KGQKGIATFLYYSGMVGERGPDGRPGREGRPGLNGENGPKGLQGRRGLPGLSGLDGQPGQ
KGSVIGMKGGRGLPGLDGRDGLNGEPGTKGRAGTKGEDGIPGSNGFDGQPGRRGQKGASG
RSNIPGPTEVGPPGLFGESGPFGPKGMRGNPGPVGFEGKPGPPGEQGLPGLLGEKGEEGV
PGVTGLPGAPGIKGLPGLPGESGLDGLPGRQGDVGPSGSTGQTGPKGEKGENGEPGLVGL
SGVKGNQGFPGITGKPGFPGLVGEPGIKGEPGRSIEPSELVTGPKGNMGVPGLPGPPGLI
GRSGLPGLQGFKGDQGERGLDGRDGIPGTHGQRGNPGPQGFIGPKGRAGRNGNPGRAGEP
GPAGRVRPPGHLIVKHSQTVDVPECPAGMTKLWDGYSLLYLEGSEKAHGQDLGGAGSCMP
RFNTMPFLYCNTQSVCKYGSRNDKSYWLSTTAAIPMMPVNVDMVQEYISRCSVCESSSIA
MAVHSQDMVIPPCPEGWSGVWLGYSFAMHTAAGAEGGGQSLSSPGSCLQDFRATPFIECN
GARGHCFFYNNQYSFWLTTIPQDYQFGTPQMETLKAGNLRTRVSRCQVCTRLNL

Nucleotide sequence

Length: 5,375

>Cisavi.CG.ENS81.R30.1983319-1996169.07573.t
TTCTGCGTATCAGAGAAGGGTCGAAGGGGACCCCCTGGTATTCAAGGCAAAGCAGGTCCT
CAGGGACAGCTTGGTTTCCCGGGTCCTGAAGGTGTTATGGGACCGAAAGGATACGCTGGT
CTTGCTGGAAGACCTGGTAAAGCTGGAGAGAAGGGAGATAGGGGGACAATCGGTGTACCA
GGGTATTCAGGTATCAATGGAGTGCCTGGTCACCCTGGAGAGCCTGGTCCAAGAGGTTTC
CCAGGTAAAGATGGTTGCAATGGAACAGATGGTGACAGTGGTGCAGCTGGTTCACCTGGT
TTTAATGGGGTTGATGGAATACCGGGAGATGCTGGACCTAAGGGCTCAAAGGGAGAGCCA
GCTTTTGTAAGTGTGGAAGACATGATTAAAGGAGAAAGGGGTGAAAGTGGTCGGCTTGGA
CCTAAAGGACCTTCTGGTACCCCTGGAAGATCTGGTCTTATTGGCCCCAAGGGTTACCCT
GGCAAGCCAGGACCACCTGGTAAACCTGGACTCAAAGGTAGCAGAGGACCTCAAGGCCAT
AAAGGGATCGGTTACCAGGGCGAAACTGGAGCCAAGGGTGAATCTGGGCCTCCTGGTTTG
CCTGGAAACAGCCAGTTCACACCAATTCCAGGACCACCGGGAAGAAATGGTTCCAAGGGA
ATGAGAGGAGAGAAAGGTGTACGTGGAGAAACAGGATATCCAGGATTCGAGGGTGCCAAA
GGTAGAGAAGGGGAAAAAGGGGAGAAAGGAGTGCGTGGTTTGGCTGGAGGTCGTGGGCCA
ACTGGAGCTGCAGGCGTAAATGGATATGATGGTGCACAGGGTGAGCGTGGTATGACAGGG
AGGCCTGGCATTGATGGCACGATTGGTATGAAGGGCGAACGTGGTGATCAAGGCCCAATA
GGAGCTCCAGGGTTACCGGGGCCGATAGGATCACCTGGTGCTCCGGGCGAAGCCGGCGTG
CCAGGGCCAACGGGGTCCAACGGCCAACCTGGTGTTAATGGATTCGATGGTCCTTCCGGG
GAAGACGGTCTTGCAGGAAATCCTGGTCTTCCTGGGAATCCAGGTTTACCTGGTGTTGGA
GAAAAGGGAGAGATAGGAATTAGAGGTAATATTGCAAATGGGCAAGATGGCGTCCCTGGT
CTTAGTGGGGAACAAGGTCCAAGAGGACTGCCAGGAGTATCTGGAGAAACCATTCCTGGG
GAAAATGGAAGAGACGGCCCTCCTGGACAAACTGGGGCCCCAGGGCAGTCTGGGTCCAGA
GGTGCACCTGGTGAACCTGGTCATATTATCATGCTGGACGGGGACAAGATGGTCGGGCCA
CAAGGATCACCTGGGATCGCTGGTTTGCGAGGAGAAAAGGGCCTTCGAGAAAAAGGAGGG
GAATGTGACTGTCAAGATGCAGTTGGAGAGACAGGTAGTCCTGGTCCACCTGGACAGGAT
GGTCTGCCTGGTTTATCTGGTCTACCGGGTATCAGTGGCCAATCTGGTGAGCCTGGTGAG
CCAGGAGAACCTGGACCTAATGGACCAAGGGGATTAGATGGACAAAAAGGAAAATCTGGC
GAGACTGGGCCAAAAGGCCAGAAAGGAGAATCTGCAACTTTAGAAGGGGAGGTCAAGGGC
GAAAAAGGTGAACTTGGTCTGCCTGGTGGACAAGGAGAACCAGGAATCGCTGGAATTCCT
GGACAAGATGGAAGAAATGGCCGCCGAGGCGCACAAGGAGAAAAGGGAGAAGTTGGACCA
CAAGGAATGCCAGGTCTACCTGGTTTGAAAGGATTTGAAGGCCCTAAGGGAAGAGAGGGA
AGATCTGGTCAAGATGCATTTGGGATACCTGGTCCACTTGGTTTTAAGGGAGAAAAGGGA
GATGAAGGATTCCAAGAATCAATATATGGGGCTGCTCCAAAGGGAGATAAAGGAGAAAAT
GGGCAATCAGGTGGACGTGGGTATCCTGGAGCTAAAGGTTCCAAAGGATCACGCGGAGAG
CCAGGGCCAGAAGGCCTTACTGGGGATGATGGAGAAAAGGGAAATGTTGGAGAACCAGGC
TTGCCGGCGTTACCTGGTGCACCAGGTAGGTCATTTTCAGGTCTTCCTGGTCAAGTTGGT
TTACCTGGAGATCAGGGTGAAAGGGGGCGAACAGGAGAAGTTGGTATGAAAGGACCTCAA
GGGAAACCTGGATTGTCCATACCAGGGAACCCAGGTCAGAAAGGGGCTAACGGCAACGAT
GGCCTACCTGGTGCAACTGGGTCTAAGGGAAGCCAAGGGTTCCCAGGTTTGGTCGGTCTC
CCTGGTCCCCCTGGATTTCCTGGTTTGGAGGGAACACCTGGATTAAGAGGGTTGCCTGGA
GCAGATGGATTGGCAGGGGAAAAAGGAGAATCTGCCCTTGTTGGGAGAAGAGGCCCACCA
GGACCAACTGGTTCAGATGGTGTCGCTGGACCTCGGGGATCTATTGGACGCAAAGGGGAG
GTTGGGCCACCGGGTCTTCCAGCTAGTGGGGAGCTAAAGGGAGAAAAGGGACAAATTGGA
CTAAGTGGAAGAGATGGATCAACTGGAATACCTGGTGAAACTGGGCTTCCTGGACCACCT
GGTGAAGATGGTTTCCCTGGAGCTCCAGGGCGACCTGGGGCAAGAGGAAAAAATGGAAGA
TCCGGGCCAAAGGGCAACGGTGGCTTAGCTGGCCTACCAGGGTTTGATGGAATGCCTGGT
CTATCTGGAAACAAAGGGTCTCCAGGAAAGCCTGGTGCCACCGGTCCTCAAGGGTTTAAA
GGAGAAAAGGGATCTGTCCCCCCTGGTGCCCAGATTCAGGTGCCAGCTGGGGAACCAGGA
GAGGCAGGACCACCTGGAGAGCCTGATGGGCCAAAGGGTGAAGGTGGTAAACCTGGAATC
AAAGGAATGGTTGGAGATGCAGGTCCTCCAGGTGATTATGGAAGGAATGGCTTGCCAGGA
GTTGAGGGGCAAAAGGGAGTAAAAGGAGCACGGGGGCAGCTTGGCTTCCCAGGAGTCATC
GGAAAACCGGGAATTGCTGGACAACCGGGAAGAGCTGGCTTACCAGGACCGGTTGGTCTC
AAAGGACAGAAAGGCATTGCTACGTTTCTTTATTATTCAGGCATGGTTGGTGAACGCGGT
CCTGATGGTAGACCTGGTCGTGAAGGTAGGCCCGGTCTAAATGGAGAAAATGGTCCAAAG
GGTTTGCAAGGACGAAGAGGGTTACCTGGTCTTAGTGGATTGGATGGCCAACCCGGTCAA
AAGGGCAGTGTAATAGGAATGAAAGGGGGCCGTGGTTTGCCAGGTTTGGATGGTAGAGAT
GGCTTGAATGGTGAACCAGGCACAAAAGGAAGGGCTGGAACTAAAGGTGAGGATGGGATC
CCTGGTTCAAATGGCTTCGATGGCCAGCCAGGAAGAAGAGGACAAAAAGGTGCTAGTGGC
AGATCCAACATACCTGGACCAACCGAGGTCGGCCCACCTGGTTTATTTGGTGAGTCAGGA
CCGTTTGGACCAAAGGGCATGCGTGGAAACCCAGGTCCAGTTGGATTCGAGGGTAAACCA
GGACCTCCTGGAGAGCAAGGTTTGCCAGGATTGCTGGGGGAAAAGGGAGAAGAAGGTGTT
CCAGGAGTTACTGGCCTTCCTGGTGCACCTGGAATCAAAGGTTTGCCTGGATTGCCGGGA
GAGAGTGGCCTTGATGGACTTCCTGGCAGACAAGGCGATGTTGGACCATCTGGCTCCACT
GGACAAACTGGACCTAAAGGTGAAAAGGGAGAGAATGGAGAGCCTGGACTTGTTGGTTTG
TCTGGAGTGAAAGGAAACCAGGGGTTCCCAGGAATCACTGGTAAACCTGGATTCCCTGGT
TTAGTTGGTGAGCCAGGTATAAAGGGGGAACCAGGCCGATCTATTGAACCAAGTGAACTT
GTTACTGGACCGAAGGGTAATATGGGGGTACCTGGCTTGCCTGGACCACCTGGTTTAATT
GGTAGATCTGGCCTTCCGGGTCTACAGGGATTTAAGGGTGATCAAGGCGAAAGAGGATTG
GATGGCCGTGATGGAATCCCTGGGACACATGGACAAAGAGGAAATCCTGGCCCACAAGGC
TTCATTGGACCAAAAGGAAGAGCAGGTAGAAATGGAAATCCAGGCCGAGCTGGCGAACCT
GGACCTGCTGGACGTGTTCGACCCCCCGGGCATCTTATCGTTAAACACAGTCAAACTGTA
GATGTACCAGAATGCCCCGCCGGTATGACGAAACTTTGGGATGGCTACAGTTTATTGTAT
CTGGAAGGAAGTGAAAAAGCTCACGGACAAGATCTAGGGGGTGCAGGGTCTTGCATGCCA
CGGTTTAACACGATGCCGTTCCTCTACTGCAACACACAAAGTGTGTGCAAATATGGCAGC
AGAAACGACAAGTCTTACTGGCTCTCAACCACAGCTGCTATTCCAATGATGCCAGTCAAC
GTTGACATGGTTCAAGAATACATCAGTCGTTGCTCAGTTTGTGAGTCATCTTCCATCGCC
ATGGCAGTGCACAGTCAAGATATGGTGATACCACCTTGTCCAGAAGGGTGGAGTGGTGTA
TGGCTGGGCTACAGTTTTGCAATGCACACTGCTGCTGGTGCTGAAGGCGGTGGCCAGTCG
CTGTCTAGCCCTGGATCTTGCTTGCAGGATTTCCGCGCGACGCCTTTCATTGAATGCAAT
GGTGCTCGCGGCCACTGCTTCTTTTACAACAACCAATACAGTTTCTGGTTAACTACGATC
CCACAAGATTATCAATTCGGAACTCCTCAAATGGAGACTCTAAAGGCAGGAAACTTAAGA
ACAAGGGTTAGCCGTTGCCAAGTCTGTACAAGGTTGAATTTGTGATCATTGAAACTTTTC
CTATATTTTTCGTTTGCTAACGAGGTTAAGACCACCAAAGAACAAGTACGATTCACATGT
ATGCCTTGTAGCCAACAATCATTGCATTTTACCCTGTACGCCATTCAGCATATTGTTTAC
ATAAGTTGGTTTCATTTTGTGTGTATCTCGCCGATGTCCTAGAATTACTTCAGGGCAAAA
GCATTTAACTAATACCATTCACCGAGAATGAAGCAGTATTTAGCACCGTACAGCATACTT
ACAGTGTTTGTCCTTTGTGTACATAATGTGATTTTTTTACTGTTACATCATTTATATGTT
TATAGCAAATCTTTCCTCTTTCTGAAATTTCCAAATGGTCCTGTTAAAAATGACTCTTGA
AAGTGCCTTACCTTAAATTCAACCATGAAAAAACAAGTTTATTTAACGGTCCTGGTAGTT
TAATTCAACGGCTTTCTTTCAATTTAACATTATAATCTTACGGTCATCCAAACTACAACT
ACATCCTGTAAATGTGGTTACTCTTGCATTCTAGT

InterProScan

Pfam
Collagen (IPR008160) - T[7-64] 1.1E-8 - T[61-119] 3.4E-9 - T[131-182] 7.9E-8 - T[373-427] 4.1E-7 - T[472-527] 2.1E-8 - T[540-591] 3.8E-7 - T[567-624] 1.1E-6 - T[634-689] 2.6E-7 - T[729-787] 6.0E-9 - T[768-825] 7.9E-8 - T[833-886] 9.0E-8 - T[870-925] 5.0E-7 - T[974-1025] 1.3E-7 - T[1034-1082] 4.2E-8 - T[1086-1140] 3.0E-8 - T[1151-1208] 1.4E-8 - T[1199-1255] 2.6E-8 - T[1235-1292] 1.5E-9 - T[1303-1360] 1.3E-8 - T[1327-1385] 1.1E-8
Gene3D
Collagen_IV_NC_sf (IPR036954) - T[1387-1612] 1.1E-108
ProSiteProfiles
Collagen_IV_NC (IPR001442) - T[1390-1613] 110.71
SMART
Collagen_IV_NC (IPR001442) - T[1390-1497] 3.3E-57 - T[1498-1612] 3.0E-64
Pfam
Collagen_IV_NC (IPR001442) - T[1392-1495] 1.5E-35 - T[1500-1610] 4.3E-41
SUPERFAMILY
CTDL_fold (IPR016187) - T[1392-1498] 8.48E-42 - T[1499-1610] 4.71E-42

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
CO4A2_HUMAN 47.554 % 598 0
CO4A1_HUMAN 40.215 % 538 4.6E-163
CO4A6_HUMAN 43.533 % 722 0