- Transcript 'KH2012:KH.C10.570.v1...' >
- Transcript 'Phfumi.CG.MTP2014.S6...' >
- Clone 'cicl059i11' >
- Transcript 'Cisavi.CG.ENS81.R30....'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R30.1983319-1996169.07574.t
Possible name(s)
COL4A1; COL4A2; COL4A6
Gene model
Location
R30 [1,983,320 / 1,995,252]
Amino acid sequence
Length: 1,695
>Cisavi.CG.ENS81.R30.1983319-1996169.07574.p
RDCSKLGKCGFCVSEKGRRGPPGIQGKAGPQGQLGFPGPEGVMGPKGYAGLAGRPGKAGE
KGDRGTIGVPGYSGINGVPGHPGEPGPRGFPGKDGCNGTDGDSGAAGSPGFNGVDGIPGD
AGPKGSKGEPAFVSVEDMIKGERGESGRLGPKGPSGTPGRSGLIGPKGYPGKPGPPGKPG
LKGSRGPQGHKGIGYQGETGAKGESGPPGLPGSPGFLTGQPDSQFTPIPGPPGRNGSKGM
RGEKGVRGETGYPGFEGAKGREGEKGEKGVRGLAGGRGPTGAAGVNGYDGAQGERGMTGR
PGIDGTIGMKGERGDQGPIGAPGLPGPIGSPGAPGEAGVPGPTGSNGQPGVNGFDGPSGE
DGLAGNPGLPGNPGLPGVGEKGEIGIRGLNGKNGQDGVPGLSGEQGPRGLPGVSGETIPG
ENGRDGPPGQTGAPGQSGSRGAPGEPGHIIMLDGDKMVGPQGSPGIAGLRGEKGLRGVNG
VDGSVGQKGEKGGECDCQDAVGETGSPGPPGQDGLPGLSGLPGISGQSGEPGEPGEPGPN
GPRGLDGQKGKSGETGPKGQKGESATLEGEVKGEKGELGLPGGQGEPGIAGIPGQDGRNG
RRGAQGEKGEVGPQGMPGLPGLKGFEGPKGREGRSGQDAFGIPGPLGFKGEKGDEGFQGP
NGFRGQKEAGESIYGAAPKGDKGENGQSGGRGYPGAKGSKGSRGEPGPEGLTGDDGEKGN
VGEPGLPAGRKGEAGLPGQVGLPGDQGERGRTGEVGMKGPQGKPGLSIPGNPGQKGANGN
DGLPGATGSKGSQGFPGLVGLPGPPGFPGLEGTPGLRGLPGADGLAGEKGESALVGRRGP
PGPTGSDGVAGPRGSIGRKGEVGPPGLPASGELKGEKGQIGLSGRDGQLGVKGDKGSTGI
PGETGLPGPPGEDGFPGAPGRPGARGKNGRSGPKGNGGLAGLPGFDGMPGLSGNKGSPGK
PGATGPQGFKGEKGSVPPGAQIQVPAGEPGEAGPPGEPGFPGRDGPKGEGGKPGIKGMVG
DAGPPGDYGRNGLPGVEGQKGVKGARGQLGFPGVIGKPGIAGQPGRAGLPGPVGLKGQKG
MVGERGPDGRPGREGRPGLNGENGPKGLQGRRGLPGLSGLDGQPGQKGSMGINGKTGSKG
NKGVIGMKGGRGLPGLDGRDGLNGEPGTKGRAGTKGEDGIPGSNGFDGQPGRRGQKGASG
RSNIPGPTGVDGPPEVGPPGLFGESGPFGPKGMRGNPGPVGFEGKPGPPGEQGLPGLLGE
KGEEGVPGVTGLPGRQGLPGREGSPGFSGRQGAPGIKGLPGLPGESGLDGLPGRQGDVGP
SGSTGQTGPKGEKGENGEPGLVGLSGVKGNQGFPGITGKPGFPGLVGEPGIKGEPGRSIE
PSELVTGPKGNMGVPGLPGPPGLIGRSGLPGLQGFKGDQGERGLDGRDGIPGTHGQRGNP
GPQGFIGPKGRAGRNGNPGRAGEPGPAGRVRPPGHLIVKHSQTVDVPECPAGMTKLWDGY
SLLYLEGSEKAHGQDLGGAGSCMPRFNTMPFLYCNTQSVCKYGSRNDKSYWLSTTAAIPM
MPVNVDMVQEYISRCSVCESSSIAMAVHSQDMVIPPCPEGWSGVWLGYSFAMHTAAGAEG
GGQSLSSPGSCLQDFRATPFIECNGARGHCFFYNNQYSFWLTTIPQDYQFGTPQMETLKA
GNLRTRVSRCQVCTR
Nucleotide sequence
Length: 5,626
>Cisavi.CG.ENS81.R30.1983319-1996169.07574.t
CGCGACTGTTCCAAACTCGGAAAATGTGGATTCTGCGTATCAGAGAAGGGTCGAAGGGGA
CCCCCTGGTATTCAAGGCAAAGCAGGTCCTCAGGGACAGCTTGGTTTCCCGGGTCCTGAA
GGTGTTATGGGACCGAAAGGATACGCTGGTCTTGCTGGAAGACCTGGTAAAGCTGGAGAG
AAGGGAGATAGGGGGACAATCGGTGTACCAGGGTATTCAGGTATCAATGGAGTGCCTGGT
CACCCTGGAGAGCCTGGTCCAAGAGGTTTCCCAGGTAAAGATGGTTGCAATGGAACAGAT
GGTGACAGTGGTGCAGCTGGTTCACCTGGTTTTAATGGGGTTGATGGAATACCGGGAGAT
GCTGGACCTAAGGGCTCAAAGGGAGAGCCAGCTTTTGTAAGTGTGGAAGACATGATTAAA
GGAGAAAGGGGTGAAAGTGGTCGGCTTGGACCTAAAGGACCTTCTGGTACCCCTGGAAGA
TCTGGTCTTATTGGCCCCAAGGGTTACCCTGGCAAGCCAGGACCACCTGGTAAACCTGGA
CTCAAAGGTAGCAGAGGACCTCAAGGCCATAAAGGGATCGGTTACCAGGGCGAAACTGGA
GCCAAGGGTGAATCTGGGCCTCCTGGTTTGCCTGGAAGTCCTGGATTTTTAACTGGTCAG
CCAGACAGCCAGTTCACACCAATTCCAGGACCACCGGGAAGAAATGGTTCCAAGGGAATG
AGAGGAGAGAAAGGTGTACGTGGAGAAACAGGATATCCAGGATTCGAGGGTGCCAAAGGT
AGAGAAGGGGAAAAAGGGGAGAAAGGAGTGCGTGGTTTGGCTGGAGGTCGTGGGCCAACT
GGAGCTGCAGGCGTAAATGGATATGATGGTGCACAGGGTGAGCGTGGTATGACAGGGAGG
CCTGGCATTGATGGCACGATTGGTATGAAGGGCGAACGTGGTGATCAAGGCCCAATAGGA
GCTCCAGGGTTACCGGGGCCGATAGGATCACCTGGTGCTCCGGGCGAAGCCGGCGTGCCA
GGGCCAACGGGGTCCAACGGCCAACCTGGTGTTAATGGATTCGATGGTCCTTCCGGGGAA
GACGGTCTTGCAGGAAATCCTGGTCTTCCTGGGAATCCAGGTTTACCTGGTGTTGGAGAA
AAGGGAGAGATAGGAATTAGAGGTTTAAATGGAAAGAATGGGCAAGATGGCGTCCCTGGT
CTTAGTGGGGAACAAGGTCCAAGAGGACTGCCAGGAGTATCTGGAGAAACCATTCCTGGG
GAAAATGGAAGAGACGGCCCTCCTGGACAAACTGGGGCCCCAGGGCAGTCTGGGTCCAGA
GGTGCACCTGGTGAACCTGGTCATATTATCATGCTGGACGGGGACAAGATGGTCGGGCCA
CAAGGATCACCTGGGATCGCTGGTTTGCGAGGAGAAAAGGGCCTTCGAGGTGTAAATGGT
GTGGATGGATCTGTTGGACAGAAAGGAGAAAAAGGAGGGGAATGTGACTGTCAAGATGCA
GTTGGAGAGACAGGTAGTCCTGGTCCACCTGGACAGGATGGTCTGCCTGGTTTATCTGGT
CTACCGGGTATCAGTGGCCAATCTGGTGAGCCTGGTGAGCCAGGAGAACCTGGACCTAAT
GGACCAAGGGGATTAGATGGACAAAAAGGAAAATCTGGCGAGACTGGGCCAAAAGGCCAG
AAAGGAGAATCTGCAACTTTAGAAGGGGAGGTCAAGGGCGAAAAAGGTGAACTTGGTCTG
CCTGGTGGACAAGGAGAACCAGGAATCGCTGGAATTCCTGGACAAGATGGAAGAAATGGC
CGCCGAGGCGCACAAGGAGAAAAGGGAGAAGTTGGACCACAAGGAATGCCAGGTCTACCT
GGTTTGAAAGGATTTGAAGGCCCTAAGGGAAGAGAGGGAAGATCTGGTCAAGATGCATTT
GGGATACCTGGTCCACTTGGTTTTAAGGGAGAAAAGGGAGATGAAGGATTCCAAGGTCCA
AATGGATTCAGAGGACAAAAGGAGGCTGGAGAATCAATATATGGGGCTGCTCCAAAGGGA
GATAAAGGAGAAAATGGGCAATCAGGTGGACGTGGGTATCCTGGAGCTAAAGGTTCCAAA
GGATCACGCGGAGAGCCAGGGCCAGAAGGCCTTACTGGGGATGATGGAGAAAAGGGAAAT
GTTGGAGAACCAGGCTTGCCGGCAGGCAGAAAGGGTGAAGCAGGTCTTCCTGGTCAAGTT
GGTTTACCTGGAGATCAGGGTGAAAGGGGGCGAACAGGAGAAGTTGGTATGAAAGGACCT
CAAGGGAAACCTGGATTGTCCATACCAGGGAACCCAGGTCAGAAAGGGGCTAACGGCAAC
GATGGCCTACCTGGTGCAACTGGGTCTAAGGGAAGCCAAGGGTTCCCAGGTTTGGTCGGT
CTCCCTGGTCCCCCTGGATTTCCTGGTTTGGAGGGAACACCTGGATTAAGAGGGTTGCCT
GGAGCAGATGGATTGGCAGGGGAAAAAGGAGAATCTGCCCTTGTTGGGAGAAGAGGCCCA
CCAGGACCAACTGGTTCAGATGGTGTCGCTGGACCTCGGGGATCTATTGGACGCAAAGGG
GAGGTTGGGCCACCGGGTCTTCCAGCTAGTGGGGAGCTAAAGGGAGAAAAGGGACAAATT
GGACTAAGTGGAAGAGATGGTCAACTTGGTGTCAAAGGCGACAAAGGATCAACTGGAATA
CCTGGTGAAACTGGGCTTCCTGGACCACCTGGTGAAGATGGTTTCCCTGGAGCTCCAGGG
CGACCTGGGGCAAGAGGAAAAAATGGAAGATCCGGGCCAAAGGGCAACGGTGGCTTAGCT
GGCCTACCAGGGTTTGATGGAATGCCTGGTCTATCTGGAAACAAAGGGTCTCCAGGAAAG
CCTGGTGCCACCGGTCCTCAAGGGTTTAAAGGAGAAAAGGGATCTGTCCCCCCTGGTGCC
CAGATTCAGGTGCCAGCTGGGGAACCAGGAGAGGCAGGACCACCTGGAGAGCCTGGTTTC
CCTGGTAGAGATGGGCCAAAGGGTGAAGGTGGTAAACCTGGAATCAAAGGAATGGTTGGA
GATGCAGGTCCTCCAGGTGATTATGGAAGGAATGGCTTGCCAGGAGTTGAGGGGCAAAAG
GGAGTAAAAGGAGCACGGGGGCAGCTTGGCTTCCCAGGAGTCATCGGAAAACCGGGAATT
GCTGGACAACCGGGAAGAGCTGGCTTACCAGGACCGGTTGGTCTCAAAGGACAGAAAGGC
ATGGTTGGTGAACGCGGTCCTGATGGTAGACCTGGTCGTGAAGGTAGGCCCGGTCTAAAT
GGAGAAAATGGTCCAAAGGGTTTGCAAGGACGAAGAGGGTTACCTGGTCTTAGTGGATTG
GATGGCCAACCCGGTCAAAAGGGCAGTATGGGCATTAATGGAAAAACAGGTTCCAAAGGA
AACAAAGGTGTAATAGGAATGAAAGGGGGCCGTGGTTTGCCAGGTTTGGATGGTAGAGAT
GGCTTGAATGGTGAACCAGGCACAAAAGGAAGGGCTGGAACTAAAGGTGAGGATGGGATC
CCTGGTTCAAATGGCTTCGATGGCCAGCCAGGAAGAAGAGGACAAAAAGGTGCTAGTGGC
AGATCCAACATACCTGGACCAACCGGTGTGGATGGGCCACCTGAGGTCGGCCCACCTGGT
TTATTTGGTGAGTCAGGACCGTTTGGACCAAAGGGCATGCGTGGAAACCCAGGTCCAGTT
GGATTCGAGGGTAAACCAGGACCTCCTGGAGAGCAAGGTTTGCCAGGATTGCTGGGGGAA
AAGGGAGAAGAAGGTGTTCCAGGAGTTACTGGCCTTCCTGGTCGGCAAGGTTTGCCTGGG
AGAGAGGGCTCACCTGGATTCAGTGGGCGGCAAGGTGCACCTGGAATCAAAGGTTTGCCT
GGATTGCCGGGAGAGAGTGGCCTTGATGGACTTCCTGGCAGACAAGGCGATGTTGGACCA
TCTGGCTCCACTGGACAAACTGGACCTAAAGGTGAAAAGGGAGAGAATGGAGAGCCTGGA
CTTGTTGGTTTGTCTGGAGTGAAAGGAAACCAGGGGTTCCCAGGAATCACTGGTAAACCT
GGATTCCCTGGTTTAGTTGGTGAGCCAGGTATAAAGGGGGAACCAGGCCGATCTATTGAA
CCAAGTGAACTTGTTACTGGACCGAAGGGTAATATGGGGGTACCTGGCTTGCCTGGACCA
CCTGGTTTAATTGGTAGATCTGGCCTTCCGGGTCTACAGGGATTTAAGGGTGATCAAGGC
GAAAGAGGATTGGATGGCCGTGATGGAATCCCTGGGACACATGGACAAAGAGGAAATCCT
GGCCCACAAGGCTTCATTGGACCAAAAGGAAGAGCAGGTAGAAATGGAAATCCAGGCCGA
GCTGGCGAACCTGGACCTGCTGGACGTGTTCGACCCCCCGGGCATCTTATCGTTAAACAC
AGTCAAACTGTAGATGTACCAGAATGCCCCGCCGGTATGACGAAACTTTGGGATGGCTAC
AGTTTATTGTATCTGGAAGGAAGTGAAAAAGCTCACGGACAAGATCTAGGGGGTGCAGGG
TCTTGCATGCCACGGTTTAACACGATGCCGTTCCTCTACTGCAACACACAAAGTGTGTGC
AAATATGGCAGCAGAAACGACAAGTCTTACTGGCTCTCAACCACAGCTGCTATTCCAATG
ATGCCAGTCAACGTTGACATGGTTCAAGAATACATCAGTCGTTGCTCAGTTTGTGAGTCA
TCTTCCATCGCCATGGCAGTGCACAGTCAAGATATGGTGATACCACCTTGTCCAGAAGGG
TGGAGTGGTGTATGGCTGGGCTACAGTTTTGCAATGCACACTGCTGCTGGTGCTGAAGGC
GGTGGCCAGTCGCTGTCTAGCCCTGGATCTTGCTTGCAGGATTTCCGCGCGACGCCTTTC
ATTGAATGCAATGGTGCTCGCGGCCACTGCTTCTTTTACAACAACCAATACAGTTTCTGG
TTAACTACGATCCCACAAGATTATCAATTCGGAACTCCTCAAATGGAGACTCTAAAGGCA
GGAAACTTAAGAACAAGGGTTAGCCGTTGCCAAGTCTGTACAAGGTTGAATTTGTGATCA
TTGAAACTTTTCCTATATTTTTCGTTTGCTAACGAGGTTAAGACCACCAAAGAACAAGTA
CGATTCACATGTATGCCTTGTAGCCAACAATCATTGCATTTTACCCTGTACGCCATTCAG
CATATTGTTTACATAAGTTGGTTTCATTTTGTGTGTATCTCGCCGATGTCCTAGAATTAC
TTCAGGGCAAAAGCATTTAACTAATACCATTCACCGAGAATGAAGCAGTATTTAGCACCG
TACAGCATACTTACAGTGTTTGTCCTTTGTGTACATAATGTGATTTTTTTACTGTTACAT
CATTTATATGTTTATAGCAAATCTTTCCTCTTTCTGAAATTTCCAAATGGTCCTGTTAAA
AATGACTCTTGAAAGTGCCTTACCTTAAATTCAACCATGAAAAAACAAGTTTATTTAACG
GTCCTGGTAGTTTAATTCAACGGCTTTCTTTCAATTTAACATTATAATCTTACGGTCATC
CAAACTACAACTACATCCTGTAAATGTGGTTACTCTTGCATTCTAG
| Pfam |
Collagen (IPR008160) - T[17-74] 1.2E-8 - T[71-129] 3.6E-9 - T[141-192] 2.0E-7 - T[230-286] 1.2E-7 - T[391-447] 9.7E-7 - T[504-560] 4.7E-9 - T[576-631] 2.8E-7 - T[679-725] 1.9E-6 - T[770-828] 2.3E-9 - T[809-866] 9.8E-8 - T[874-927] 3.1E-8 - T[920-975] 5.8E-7 - T[987-1045] 1.2E-8 - T[1016-1072] 2.1E-9 - T[1217-1275] 1.6E-7 - T[1274-1332] 4.3E-7 - T[1316-1375] 7.2E-10 - T[1387-1444] 1.1E-8 - T[1411-1469] 9.5E-9 |
| Gene3D |
Collagen_IV_NC_sf (IPR036954) - T[1471-1695] 1.9E-108 |
| SMART |
Collagen_IV_NC (IPR001442) - T[1474-1581] 3.3E-57 - T[1582-1695] 5.6E-62 |
| ProSiteProfiles |
Collagen_IV_NC (IPR001442) - T[1474-1695] 111.565 |
| SUPERFAMILY |
CTDL_fold (IPR016187) - T[1476-1582] 8.95E-42 - T[1583-1694] 6.59E-42 |
| Pfam |
Collagen_IV_NC (IPR001442) - T[1476-1579] 1.6E-35 - T[1584-1694] 4.6E-41 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| CO4A2_HUMAN | 47.222 % | 623 | 0 |
| CO4A3_HUMAN | 36.228 % | 388 | 1.62E-110 |
| CO4A6_HUMAN | 37.237 % | 414 | 3.34E-119 |