- Transcript 'Cisavi.CG.ENS81.R30....'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R30.1983319-1996169.07575.t
Possible name(s)
COL4A1; COL4A2; COL4A6
Gene model
Location
R30 [1,983,849 / 1,996,169]
Amino acid sequence
Length: 1,698
>Cisavi.CG.ENS81.R30.1983319-1996169.07575.p
CGGRDCSKLGKCGFCVSEKGRRGPPGIQGKAGPQGQLGFPGPEGVMGPKGYAGLAGRPGK
AGEKGDRGTIGVPGYSGINGVPGHPGEPGPRGFPGKDGCNGTDGDSGAAGSPGFNGVDGI
PGDAGPKGSKGEPAFVSVEDMIKGERGESGRLGPKGPSGTPGRSGLIGPKGYPGKPGPPG
KPGLKGSRGPQGHKGIGYQGETGAKGESGPPGLPGSPGFLTGQPDSQFTPIPGPPGRNGS
KGMRGEKGVRGETGYPGFEGAKGREGEKGEKGVRGLAGGRGPTGAAGVNGYDGAQGERGM
TGRPGIDGTIGMKGERGDQGPIGAPGLPGLQGLQGPIGSPGAPGEAGVPGPTGSNGQPGV
NGFDGPSGEDGLAGNPGLPGNPGLPGVGEKGEIGIRGLNGKNGQDGVPGLSGEQGPRGLP
GVSGETIPGENGRDGPPGQTGAPGQSGSRGAPGEPGHIIMLDGDKMVGPQGSPGIAGLRG
EKGLRGVNGVDGSVGQKGEKGGECDCQDAVGETGSPGPPGQDGLPGLSGLPGISGQSGEP
GEPGEPGPNGPRGLDGQKGKSGETGPKGQKGESATLEGEVKGEKGELGLPGGQGEPGIAG
IPGQDGRNGRRGAQGEKGEVGPQGMPGLPGLKGFEGPKGREGRSGQDAFGIPGPLGFKGE
KGDEGFQGPNGFRGQKESIYGAAPKGDKGENGQSGGRGYPGAKGSKGSRGEPGPEGLTGD
DGEKGNVGEPGLPAGRKGEAGLPGQVGLPGDQGERGRTGEVGMKGPQGKPGLSIPGNPGQ
KGANGNDGLPGATGSKGSQGFPGLVGLPGPPGFPGLEGTPGLRGLPGADGLAGEKGESAL
VGRRGPPGPTGSDGVAGPRGSIGRKGEVGPPGLPASGELKGEKGQIGLSGRDGQLGVKGD
KGSTGIPGETGLPGPPGEDGFPGAPGRPGARGKNGRSGPKGNGGLAGLPGFDGMPGKPGA
TGPQGFKGEKGSVPPGAQIQVPAGEPGEAGPPGEPGVQGFPGRDGPKGEGGKPGIKGMVG
DAGPPGDYGRNGLPGVEGQKGVKGARGQLGFPGVIGKPGIAGQPGRAGLPGPVGLKGQKG
MVGERGPDGRPGREGRPGLNGENGPKGLQGRRGLPGLSGLDGQPGQKGSMGINGKTGSKV
THSTFSAGNKGVIGMKGGRGLPGLDGRDGLNGEPGTKGRAGTKGEDGIPGSNGFDGQPGR
RGQKGASGRSNIPGPTGVDGPPGIKGEVGPPGLFGESGPFGPKGMRGNPGPVGFEGKPGP
PGEQGLPGLLGEKGEEGVPGVTGLPGRQGLPGREGSPGFSGRQGAPGIKGLPGLPGESGL
DGLPGRQGDVGPSGSTGQTGPKENGEPGLVGLSGVKGNQGFPGITGKPGFPGLVGEPGIK
GEPGRSIEPSELVTGPKGNMGVPGLPGPPGLIGRSGLPGLQGFKGDQGERGLDGRDGIPG
THGQRGNPGPQGFIGPKGRAAGEPGPAGRVRPPGHLIVKHSQTVDVPECPAGMTKLWDGY
SLLYLEGSEKAHGQDLGGAGSCMPRFNTMPFLYCNTQSVCKYGSRNDKSYWLSTTAAIPM
MPVNVDMVQEYISRCSVCESSSIAMAVHSQDMVIPPCPEGWSGVWLGYSFAMHTAAGAEG
GGQSLSSPGSCLQDFRATPFIECNGARGHCFFYNNQYSFWLTTIPQDYQFGTPQMETLKA
GNLRTRVSRCQVCTRLNL
Nucleotide sequence
Length: 5,379
>Cisavi.CG.ENS81.R30.1983319-1996169.07575.t
CATTTTCGTATCTAACTGAATGAAGTTACTGTGATAGTAGGCCAAGGTCATTTACCACAG
GAAGGAAACGGCGAGCAGATTACATCGGGTCGTCTGCGAAAGTTTGGCGGCTCCGTGACG
AATAAGATCTCCGCACTATTTCGCGGAGTTGGGGCAAGAAAATAGAATATGGCTTCTTTC
ATTTTTTTACCAAATAGATACACGTGGGTGCTGGTTGTGCTTTTCGTGACGCTCACACTG
CAAATCAACGCTGAAAGATCGATCAAGAAATTAAAGGGTCCTTGCGGCGGGCGCGACTGT
TCCAAACTCGGAAAATGTGGATTCTGCGTATCAGAGAAGGGTCGAAGGGGACCCCCTGGT
ATTCAAGGCAAAGCAGGTCCTCAGGGACAGCTTGGTTTCCCGGGTCCTGAAGGTGTTATG
GGACCGAAAGGATACGCTGGTCTTGCTGGAAGACCTGGTAAAGCTGGAGAGAAGGGAGAT
AGGGGGACAATCGGTGTACCAGGGTATTCAGGTATCAATGGAGTGCCTGGTCACCCTGGA
GAGCCTGGTCCAAGAGGTTTCCCAGGTAAAGATGGTTGCAATGGAACAGATGGTGACAGT
GGTGCAGCTGGTTCACCTGGTTTTAATGGGGTTGATGGAATACCGGGAGATGCTGGACCT
AAGGGCTCAAAGGGAGAGCCAGCTTTTGTAAGTGTGGAAGACATGATTAAAGGAGAAAGG
GGTGAAAGTGGTCGGCTTGGACCTAAAGGACCTTCTGGTACCCCTGGAAGATCTGGTCTT
ATTGGCCCCAAGGGTTACCCTGGCAAGCCAGGACCACCTGGTAAACCTGGACTCAAAGGT
AGCAGAGGACCTCAAGGCCATAAAGGGATCGGTTACCAGGGCGAAACTGGAGCCAAGGGT
GAATCTGGGCCTCCTGGTTTGCCTGGAAGTCCTGGATTTTTAACTGGTCAGCCAGACAGC
CAGTTCACACCAATTCCAGGACCACCGGGAAGAAATGGTTCCAAGGGAATGAGAGGAGAG
AAAGGTGTACGTGGAGAAACAGGATATCCAGGATTCGAGGGTGCCAAAGGTAGAGAAGGG
GAAAAAGGGGAGAAAGGAGTGCGTGGTTTGGCTGGAGGTCGTGGGCCAACTGGAGCTGCA
GGCGTAAATGGATATGATGGTGCACAGGGTGAGCGTGGTATGACAGGGAGGCCTGGCATT
GATGGCACGATTGGTATGAAGGGCGAACGTGGTGATCAAGGCCCAATAGGAGCTCCAGGG
TTACCGGGTCTACAGGGACTACAAGGGCCGATAGGATCACCTGGTGCTCCGGGCGAAGCC
GGCGTGCCAGGGCCAACGGGGTCCAACGGCCAACCTGGTGTTAATGGATTCGATGGTCCT
TCCGGGGAAGACGGTCTTGCAGGAAATCCTGGTCTTCCTGGGAATCCAGGTTTACCTGGT
GTTGGAGAAAAGGGAGAGATAGGAATTAGAGGTTTAAATGGAAAGAATGGGCAAGATGGC
GTCCCTGGTCTTAGTGGGGAACAAGGTCCAAGAGGACTGCCAGGAGTATCTGGAGAAACC
ATTCCTGGGGAAAATGGAAGAGACGGCCCTCCTGGACAAACTGGGGCCCCAGGGCAGTCT
GGGTCCAGAGGTGCACCTGGTGAACCTGGTCATATTATCATGCTGGACGGGGACAAGATG
GTCGGGCCACAAGGATCACCTGGGATCGCTGGTTTGCGAGGAGAAAAGGGCCTTCGAGGT
GTAAATGGTGTGGATGGATCTGTTGGACAGAAAGGAGAAAAAGGAGGGGAATGTGACTGT
CAAGATGCAGTTGGAGAGACAGGTAGTCCTGGTCCACCTGGACAGGATGGTCTGCCTGGT
TTATCTGGTCTACCGGGTATCAGTGGCCAATCTGGTGAGCCTGGTGAGCCAGGAGAACCT
GGACCTAATGGACCAAGGGGATTAGATGGACAAAAAGGAAAATCTGGCGAGACTGGGCCA
AAAGGCCAGAAAGGAGAATCTGCAACTTTAGAAGGGGAGGTCAAGGGCGAAAAAGGTGAA
CTTGGTCTGCCTGGTGGACAAGGAGAACCAGGAATCGCTGGAATTCCTGGACAAGATGGA
AGAAATGGCCGCCGAGGCGCACAAGGAGAAAAGGGAGAAGTTGGACCACAAGGAATGCCA
GGTCTACCTGGTTTGAAAGGATTTGAAGGCCCTAAGGGAAGAGAGGGAAGATCTGGTCAA
GATGCATTTGGGATACCTGGTCCACTTGGTTTTAAGGGAGAAAAGGGAGATGAAGGATTC
CAAGGTCCAAATGGATTCAGAGGACAAAAGGAATCAATATATGGGGCTGCTCCAAAGGGA
GATAAAGGAGAAAATGGGCAATCAGGTGGACGTGGGTATCCTGGAGCTAAAGGTTCCAAA
GGATCACGCGGAGAGCCAGGGCCAGAAGGCCTTACTGGGGATGATGGAGAAAAGGGAAAT
GTTGGAGAACCAGGCTTGCCGGCAGGCAGAAAGGGTGAAGCAGGTCTTCCTGGTCAAGTT
GGTTTACCTGGAGATCAGGGTGAAAGGGGGCGAACAGGAGAAGTTGGTATGAAAGGACCT
CAAGGGAAACCTGGATTGTCCATACCAGGGAACCCAGGTCAGAAAGGGGCTAACGGCAAC
GATGGCCTACCTGGTGCAACTGGGTCTAAGGGAAGCCAAGGGTTCCCAGGTTTGGTCGGT
CTCCCTGGTCCCCCTGGATTTCCTGGTTTGGAGGGAACACCTGGATTAAGAGGGTTGCCT
GGAGCAGATGGATTGGCAGGGGAAAAAGGAGAATCTGCCCTTGTTGGGAGAAGAGGCCCA
CCAGGACCAACTGGTTCAGATGGTGTCGCTGGACCTCGGGGATCTATTGGACGCAAAGGG
GAGGTTGGGCCACCGGGTCTTCCAGCTAGTGGGGAGCTAAAGGGAGAAAAGGGACAAATT
GGACTAAGTGGAAGAGATGGTCAACTTGGTGTCAAAGGCGACAAAGGATCAACTGGAATA
CCTGGTGAAACTGGGCTTCCTGGACCACCTGGTGAAGATGGTTTCCCTGGAGCTCCAGGG
CGACCTGGGGCAAGAGGAAAAAATGGAAGATCCGGGCCAAAGGGCAACGGTGGCTTAGCT
GGCCTACCAGGGTTTGATGGAATGCCTGGAAAGCCTGGTGCCACCGGTCCTCAAGGGTTT
AAAGGAGAAAAGGGATCTGTCCCCCCTGGTGCCCAGATTCAGGTGCCAGCTGGGGAACCA
GGAGAGGCAGGACCACCTGGAGAGCCTGGTGTTCAGGGTTTCCCTGGTAGAGATGGGCCA
AAGGGTGAAGGTGGTAAACCTGGAATCAAAGGAATGGTTGGAGATGCAGGTCCTCCAGGT
GATTATGGAAGGAATGGCTTGCCAGGAGTTGAGGGGCAAAAGGGAGTAAAAGGAGCACGG
GGGCAGCTTGGCTTCCCAGGAGTCATCGGAAAACCGGGAATTGCTGGACAACCGGGAAGA
GCTGGCTTACCAGGACCGGTTGGTCTCAAAGGACAGAAAGGCATGGTTGGTGAACGCGGT
CCTGATGGTAGACCTGGTCGTGAAGGTAGGCCCGGTCTAAATGGAGAAAATGGTCCAAAG
GGTTTGCAAGGACGAAGAGGGTTACCTGGTCTTAGTGGATTGGATGGCCAACCCGGTCAA
AAGGGCAGTATGGGCATTAATGGAAAAACAGGTTCCAAAGTTACTCATAGTACTTTTTCT
GCAGGAAACAAAGGTGTAATAGGAATGAAAGGGGGCCGTGGTTTGCCAGGTTTGGATGGT
AGAGATGGCTTGAATGGTGAACCAGGCACAAAAGGAAGGGCTGGAACTAAAGGTGAGGAT
GGGATCCCTGGTTCAAATGGCTTCGATGGCCAGCCAGGAAGAAGAGGACAAAAAGGTGCT
AGTGGCAGATCCAACATACCTGGACCAACCGGTGTGGATGGGCCACCTGGAATTAAAGGA
GAGGTCGGCCCACCTGGTTTATTTGGTGAGTCAGGACCGTTTGGACCAAAGGGCATGCGT
GGAAACCCAGGTCCAGTTGGATTCGAGGGTAAACCAGGACCTCCTGGAGAGCAAGGTTTG
CCAGGATTGCTGGGGGAAAAGGGAGAAGAAGGTGTTCCAGGAGTTACTGGCCTTCCTGGT
CGGCAAGGTTTGCCTGGGAGAGAGGGCTCACCTGGATTCAGTGGGCGGCAAGGTGCACCT
GGAATCAAAGGTTTGCCTGGATTGCCGGGAGAGAGTGGCCTTGATGGACTTCCTGGCAGA
CAAGGCGATGTTGGACCATCTGGCTCCACTGGACAAACTGGACCTAAAGAGAATGGAGAG
CCTGGACTTGTTGGTTTGTCTGGAGTGAAAGGAAACCAGGGGTTCCCAGGAATCACTGGT
AAACCTGGATTCCCTGGTTTAGTTGGTGAGCCAGGTATAAAGGGGGAACCAGGCCGATCT
ATTGAACCAAGTGAACTTGTTACTGGACCGAAGGGTAATATGGGGGTACCTGGCTTGCCT
GGACCACCTGGTTTAATTGGTAGATCTGGCCTTCCGGGTCTACAGGGATTTAAGGGTGAT
CAAGGCGAAAGAGGATTGGATGGCCGTGATGGAATCCCTGGGACACATGGACAAAGAGGA
AATCCTGGCCCACAAGGCTTCATTGGACCAAAAGGAAGAGCAGCTGGCGAACCTGGACCT
GCTGGACGTGTTCGACCCCCCGGGCATCTTATCGTTAAACACAGTCAAACTGTAGATGTA
CCAGAATGCCCCGCCGGTATGACGAAACTTTGGGATGGCTACAGTTTATTGTATCTGGAA
GGAAGTGAAAAAGCTCACGGACAAGATCTAGGGGGTGCAGGGTCTTGCATGCCACGGTTT
AACACGATGCCGTTCCTCTACTGCAACACACAAAGTGTGTGCAAATATGGCAGCAGAAAC
GACAAGTCTTACTGGCTCTCAACCACAGCTGCTATTCCAATGATGCCAGTCAACGTTGAC
ATGGTTCAAGAATACATCAGTCGTTGCTCAGTTTGTGAGTCATCTTCCATCGCCATGGCA
GTGCACAGTCAAGATATGGTGATACCACCTTGTCCAGAAGGGTGGAGTGGTGTATGGCTG
GGCTACAGTTTTGCAATGCACACTGCTGCTGGTGCTGAAGGCGGTGGCCAGTCGCTGTCT
AGCCCTGGATCTTGCTTGCAGGATTTCCGCGCGACGCCTTTCATTGAATGCAATGGTGCT
CGCGGCCACTGCTTCTTTTACAACAACCAATACAGTTTCTGGTTAACTACGATCCCACAA
GATTATCAATTCGGAACTCCTCAAATGGAGACTCTAAAGGCAGGAAACTTAAGAACAAGG
GTTAGCCGTTGCCAAGTCTGTACAAGGTTGAATTTGTGA
| Pfam |
Collagen (IPR008160) - T[20-77] 1.0E-8 - T[74-132] 3.3E-9 - T[144-195] 2.0E-7 - T[233-290] 3.7E-8 - T[287-344] 3.3E-7 - T[329-386] 1.7E-8 - T[400-455] 1.9E-6 - T[514-569] 5.0E-9 - T[588-642] 1.8E-7 - T[685-731] 1.9E-6 - T[776-834] 7.8E-9 - T[815-872] 9.6E-8 - T[881-934] 2.4E-8 - T[917-972] 2.2E-7 - T[982-1039] 3.6E-7 - T[1032-1084] 2.2E-6 - T[1077-1135] 3.8E-9 - T[1148-1206] 9.5E-8 - T[1241-1298] 9.7E-8 - T[1286-1342] 7.6E-9 - T[1331-1385] 1.1E-6 - T[1395-1452] 1.8E-8 |
| Gene3D |
Collagen_IV_NC_sf (IPR036954) - T[1471-1696] 1.2E-108 |
| ProSiteProfiles |
Collagen_IV_NC (IPR001442) - T[1474-1697] 110.71 |
| SMART |
Collagen_IV_NC (IPR001442) - T[1474-1581] 3.3E-57 - T[1582-1696] 3.0E-64 |
| Pfam |
Collagen_IV_NC (IPR001442) - T[1476-1579] 1.6E-35 - T[1584-1694] 4.6E-41 |
| SUPERFAMILY |
CTDL_fold (IPR016187) - T[1476-1582] 8.95E-42 - T[1583-1694] 4.94E-42 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| CO4A2_HUMAN | 46.452 % | 605 | 0 |
| CO4A1_HUMAN | 39.211 % | 551 | 2.01E-167 |
| CO4A6_HUMAN | 40.196 % | 647 | 0 |