- Clone 'citb4a17' >
- Clone 'AHC0AAA251YF11' >
- Transcript 'Cisavi.CG.ENS81.R30....'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R30.1983319-1996169.07576.t
Possible name(s)
COL4A1; COL4A2; COL4A6
Gene model
Location
R30 [1,983,855 / 1,994,102]
Amino acid sequence
Length: 1,654
>Cisavi.CG.ENS81.R30.1983319-1996169.07576.p
GPPGIQGKAGPQGQLGFPGPEGVMGPKGYAGLAGRPGKAGEKGDRGTIGVPGYSGINGVP
GHPGEPGPRGFPGKDGCNGTDGDSGAAGSPGFNGVDGIPGDAGPKGSKGEPAFVSVEDMI
KGERGESGRLGPKGPSGTPGRSGLIGPKGYPGKPGPPGKPGLKGSRGPQGHKGIGYQGET
GAKGESGPPGLPGSPGFLTGQPDSQFTPIPGPPGRNGSKGAKGREGEKGEKGVRGLAGGR
GPTGAAGVNGYDGAQGERGMTGRPGIDGTIGMKGERGDQGPIGAPGLPGLQGLQGPIGSP
GAPGEAGVPGPTGSNGQPGVNGFDGPSGEDGLAGNPGLPGNPGLPGVGEKGEIGIRGLNG
KNGQDGVPGLSGEQGPRGLPGVSGETIPGENGRDGPPGQTGAPGQSGSRGAPGEPGHIIM
LDGDKMVGPQGSPGIAGLRGEKGLRGVNGVDGSVGQKGEKGGECDCQDAVGETGSPGPPG
QDGLPGLSGLPGISGQSGEPGEPGEPGPNGPRGLDGQKGKSGETGPKGQKGESATLEGEV
KGEKGELGLPGGQGEPGIAGIPGQDGRNGRRGAQGEKGEVGPQGMPGLPGLKGFEGPKGR
EGRSGQDAFGIPGPLGFKGEKGDEGFQENGQSGGRGYPGAKGSKGSRGEPGPEGLTGDDG
EKGNVGEPGLPALPGAPVLLDVGYYTGERGRKGEAGLPGQVGLPGDQGERGRTGEVGMKG
PQGKPGLSIPGNPGQKGANGNDGLPGATGSKGSQGFPGLVGLPGPPGFPGLEGTPGLRGL
PGADGLAESALVGRRGPPGPTGSDGVAGPRGSIGRKGEVGPPGLPASGELKGEKGQIGLS
GRDGQLGVKGDKGSTGIPGETGLPGPPGEDGFPGAPGRPGARGKNGRSGPKGNGGLAGLP
GFDGMPGLSGNKGSPGKPGATGPQGFKGEKGSVPPGAQIQVPAGEPGEAGPPGEPGVQGF
PGRDGPKGEGGKPGIKGMVGDAGPPGDYGRNGLPGVEGQKGVKGARGQLGFPGVIGKPGI
AGQPGRAGLPGPVGLKGQKGIATFLYYSGMVGERGPDGRPGREGRPGLNGENGPKGLQGR
RGLPGLSGLDGQPGQKGSMGINGKTGSKGNKGVIGMKGGRGLPGLDGRDGLNGEPGTKGR
AGTKGEDGIPGSNGFDGQPGRRGQKGASGRSNIPGPTGVDGPPGIKGEVGPPGLFGESGP
FGPKGMRGNPGPVGFEGKPGPPGEQGLPGLLGEKGEEGVPGVTGLPGRQGLPGREGSPGF
SGRQGAPGIKGLPGLPGESGLDGLPGRQGDGENGEPGLVGLSGVKGNQGFPGITGKPGFP
GLVGEPGIKGEPGRSIEPSELVTGPKGNMGVPGLPGPPGLIGRSGLPGLQGFKGDQGERG
LDGRDGIPGTHGQRGNPGPQGFIGPKGRAGRNGNPGRAGEPGPAGRVRPPGHLIVKHSQT
VDVPECPAGMTKLWDGYSLLYLEGSEKAHGQDLGGAGSCMPRFNTMPFLYCNTQSVCKYG
SRNDKSYWLSTTAAIPMMPVNVDMVRKYISRCSVCESSSIAMAVHSQDMVIPPCPEGWSG
VWLGYSFAMHTAAGAEGGGQSLSSPGSCLQDFRATPFIECNGARGHCFFYNNQYSFWLTT
IPQDYQFGTPQMETLKAGNLRTRVSRCQVCTRLN
Nucleotide sequence
Length: 4,962
>Cisavi.CG.ENS81.R30.1983319-1996169.07576.t
GGACCCCCTGGTATTCAAGGCAAAGCAGGTCCTCAGGGACAGCTTGGTTTCCCGGGTCCT
GAAGGTGTTATGGGACCGAAAGGATACGCTGGTCTTGCTGGAAGACCTGGTAAAGCTGGA
GAGAAGGGAGATAGGGGGACAATCGGTGTACCAGGGTATTCAGGTATCAATGGAGTGCCT
GGTCACCCTGGAGAGCCTGGTCCAAGAGGTTTCCCAGGTAAAGATGGTTGCAATGGAACA
GATGGTGACAGTGGTGCAGCTGGTTCACCTGGTTTTAATGGGGTTGATGGAATACCGGGA
GATGCTGGACCTAAGGGCTCAAAGGGAGAGCCAGCTTTTGTAAGTGTGGAAGACATGATT
AAAGGAGAAAGGGGTGAAAGTGGTCGGCTTGGACCTAAAGGACCTTCTGGTACCCCTGGA
AGATCTGGTCTTATTGGCCCCAAGGGTTACCCTGGCAAGCCAGGACCACCTGGTAAACCT
GGACTCAAAGGTAGCAGAGGACCTCAAGGCCATAAAGGGATCGGTTACCAGGGCGAAACT
GGAGCCAAGGGTGAATCTGGGCCTCCTGGTTTGCCTGGAAGTCCTGGATTTTTAACTGGT
CAGCCAGACAGCCAGTTCACACCAATTCCAGGACCACCGGGAAGAAATGGTTCCAAGGGT
GCCAAAGGTAGAGAAGGGGAAAAAGGGGAGAAAGGAGTGCGTGGTTTGGCTGGAGGTCGT
GGGCCAACTGGAGCTGCAGGCGTAAATGGATATGATGGTGCACAGGGTGAGCGTGGTATG
ACAGGGAGGCCTGGCATTGATGGCACGATTGGTATGAAGGGCGAACGTGGTGATCAAGGC
CCAATAGGAGCTCCAGGGTTACCGGGTCTACAGGGACTACAAGGGCCGATAGGATCACCT
GGTGCTCCGGGCGAAGCCGGCGTGCCAGGGCCAACGGGGTCCAACGGCCAACCTGGTGTT
AATGGATTCGATGGTCCTTCCGGGGAAGACGGTCTTGCAGGAAATCCTGGTCTTCCTGGG
AATCCAGGTTTACCTGGTGTTGGAGAAAAGGGAGAGATAGGAATTAGAGGTTTAAATGGA
AAGAATGGGCAAGATGGCGTCCCTGGTCTTAGTGGGGAACAAGGTCCAAGAGGACTGCCA
GGAGTATCTGGAGAAACCATTCCTGGGGAAAATGGAAGAGACGGCCCTCCTGGACAAACT
GGGGCCCCAGGGCAGTCTGGGTCCAGAGGTGCACCTGGTGAACCTGGTCATATTATCATG
CTGGACGGGGACAAGATGGTCGGGCCACAAGGATCACCTGGGATCGCTGGTTTGCGAGGA
GAAAAGGGCCTTCGAGGTGTAAATGGTGTGGATGGATCTGTTGGACAGAAAGGAGAAAAA
GGAGGGGAATGTGACTGTCAAGATGCAGTTGGAGAGACAGGTAGTCCTGGTCCACCTGGA
CAGGATGGTCTGCCTGGTTTATCTGGTCTACCGGGTATCAGTGGCCAATCTGGTGAGCCT
GGTGAGCCAGGAGAACCTGGACCTAATGGACCAAGGGGATTAGATGGACAAAAAGGAAAA
TCTGGCGAGACTGGGCCAAAAGGCCAGAAAGGAGAATCTGCAACTTTAGAAGGGGAGGTC
AAGGGCGAAAAAGGTGAACTTGGTCTGCCTGGTGGACAAGGAGAACCAGGAATCGCTGGA
ATTCCTGGACAAGATGGAAGAAATGGCCGCCGAGGCGCACAAGGAGAAAAGGGAGAAGTT
GGACCACAAGGAATGCCAGGTCTACCTGGTTTGAAAGGATTTGAAGGCCCTAAGGGAAGA
GAGGGAAGATCTGGTCAAGATGCATTTGGGATACCTGGTCCACTTGGTTTTAAGGGAGAA
AAGGGAGATGAAGGATTCCAAGAAAATGGGCAATCAGGTGGACGTGGGTATCCTGGAGCT
AAAGGTTCCAAAGGATCACGCGGAGAGCCAGGGCCAGAAGGCCTTACTGGGGATGATGGA
GAAAAGGGAAATGTTGGAGAACCAGGCTTGCCGGCGTTACCTGGTGCACCAGTTTTATTG
GATGTGGGTTATTACACAGGTGAAAGAGGCAGAAAGGGTGAAGCAGGTCTTCCTGGTCAA
GTTGGTTTACCTGGAGATCAGGGTGAAAGGGGGCGAACAGGAGAAGTTGGTATGAAAGGA
CCTCAAGGGAAACCTGGATTGTCCATACCAGGGAACCCAGGTCAGAAAGGGGCTAACGGC
AACGATGGCCTACCTGGTGCAACTGGGTCTAAGGGAAGCCAAGGGTTCCCAGGTTTGGTC
GGTCTCCCTGGTCCCCCTGGATTTCCTGGTTTGGAGGGAACACCTGGATTAAGAGGGTTG
CCTGGAGCAGATGGATTGGCAGAATCTGCCCTTGTTGGGAGAAGAGGCCCACCAGGACCA
ACTGGTTCAGATGGTGTCGCTGGACCTCGGGGATCTATTGGACGCAAAGGGGAGGTTGGG
CCACCGGGTCTTCCAGCTAGTGGGGAGCTAAAGGGAGAAAAGGGACAAATTGGACTAAGT
GGAAGAGATGGTCAACTTGGTGTCAAAGGCGACAAAGGATCAACTGGAATACCTGGTGAA
ACTGGGCTTCCTGGACCACCTGGTGAAGATGGTTTCCCTGGAGCTCCAGGGCGACCTGGG
GCAAGAGGAAAAAATGGAAGATCCGGGCCAAAGGGCAACGGTGGCTTAGCTGGCCTACCA
GGGTTTGATGGAATGCCTGGTCTATCTGGAAACAAAGGGTCTCCAGGAAAGCCTGGTGCC
ACCGGTCCTCAAGGGTTTAAAGGAGAAAAGGGATCTGTCCCCCCTGGTGCCCAGATTCAG
GTGCCAGCTGGGGAACCAGGAGAGGCAGGACCACCTGGAGAGCCTGGTGTTCAGGGTTTC
CCTGGTAGAGATGGGCCAAAGGGTGAAGGTGGTAAACCTGGAATCAAAGGAATGGTTGGA
GATGCAGGTCCTCCAGGTGATTATGGAAGGAATGGCTTGCCAGGAGTTGAGGGGCAAAAG
GGAGTAAAAGGAGCACGGGGGCAGCTTGGCTTCCCAGGAGTCATCGGAAAACCGGGAATT
GCTGGACAACCGGGAAGAGCTGGCTTACCAGGACCGGTTGGTCTCAAAGGACAGAAAGGC
ATTGCTACGTTTCTTTATTATTCAGGCATGGTTGGTGAACGCGGTCCTGATGGTAGACCT
GGTCGTGAAGGTAGGCCCGGTCTAAATGGAGAAAATGGTCCAAAGGGTTTGCAAGGACGA
AGAGGGTTACCTGGTCTTAGTGGATTGGATGGCCAACCCGGTCAAAAGGGCAGTATGGGC
ATTAATGGAAAAACAGGTTCCAAAGGAAACAAAGGTGTAATAGGAATGAAAGGGGGCCGT
GGTTTGCCAGGTTTGGATGGTAGAGATGGCTTGAATGGTGAACCAGGCACAAAAGGAAGG
GCTGGAACTAAAGGTGAGGATGGGATCCCTGGTTCAAATGGCTTCGATGGCCAGCCAGGA
AGAAGAGGACAAAAAGGTGCTAGTGGCAGATCCAACATACCTGGACCAACCGGTGTGGAT
GGGCCACCTGGAATTAAAGGAGAGGTCGGCCCACCTGGTTTATTTGGTGAGTCAGGACCG
TTTGGACCAAAGGGCATGCGTGGAAACCCAGGTCCAGTTGGATTCGAGGGTAAACCAGGA
CCTCCTGGAGAGCAAGGTTTGCCAGGATTGCTGGGGGAAAAGGGAGAAGAAGGTGTTCCA
GGAGTTACTGGCCTTCCTGGTCGGCAAGGTTTGCCTGGGAGAGAGGGCTCACCTGGATTC
AGTGGGCGGCAAGGTGCACCTGGAATCAAAGGTTTGCCTGGATTGCCGGGAGAGAGTGGC
CTTGATGGACTTCCTGGCAGACAAGGCGATGGAGAGAATGGAGAGCCTGGACTTGTTGGT
TTGTCTGGAGTGAAAGGAAACCAGGGGTTCCCAGGAATCACTGGTAAACCTGGATTCCCT
GGTTTAGTTGGTGAGCCAGGTATAAAGGGGGAACCAGGCCGATCTATTGAACCAAGTGAA
CTTGTTACTGGACCGAAGGGTAATATGGGGGTACCTGGCTTGCCTGGACCACCTGGTTTA
ATTGGTAGATCTGGCCTTCCGGGTCTACAGGGATTTAAGGGTGATCAAGGCGAAAGAGGA
TTGGATGGCCGTGATGGAATCCCTGGGACACATGGACAAAGAGGAAATCCTGGCCCACAA
GGCTTCATTGGACCAAAAGGAAGAGCAGGTAGAAATGGAAATCCAGGCCGAGCTGGCGAA
CCTGGACCTGCTGGACGTGTTCGACCCCCCGGGCATCTTATCGTTAAACACAGTCAAACT
GTAGATGTACCAGAATGCCCCGCCGGTATGACGAAACTTTGGGATGGCTACAGTTTATTG
TATCTGGAAGGAAGTGAAAAAGCTCACGGACAAGATCTAGGGGGTGCAGGGTCTTGCATG
CCACGGTTTAACACGATGCCGTTCCTCTACTGCAACACACAAAGTGTGTGCAAATATGGC
AGCAGAAACGACAAGTCTTACTGGCTCTCAACCACAGCTGCTATTCCAATGATGCCAGTC
AACGTTGACATGGTAAGAAAATACATCAGTCGTTGCTCAGTTTGTGAGTCATCTTCCATC
GCCATGGCAGTGCACAGTCAAGATATGGTGATACCACCTTGTCCAGAAGGGTGGAGTGGT
GTATGGCTGGGCTACAGTTTTGCAATGCACACTGCTGCTGGTGCTGAAGGCGGTGGCCAG
TCGCTGTCTAGCCCTGGATCTTGCTTGCAGGATTTCCGCGCGACGCCTTTCATTGAATGC
AATGGTGCTCGCGGCCACTGCTTCTTTTACAACAACCAATACAGTTTCTGGTTAACTACG
ATCCCACAAGATTATCAATTCGGAACTCCTCAAATGGAGACTCTAAAGGCAGGAAACTTA
AGAACAAGGGTTAGCCGTTGCCAAGTCTGTACAAGGTTGAAT
| Pfam |
Collagen (IPR008160) - T[1-58] 2.3E-8 - T[52-110] 4.8E-9 - T[122-173] 1.9E-7 - T[210-265] 4.2E-7 - T[247-305] 1.6E-8 - T[360-416] 9.2E-7 - T[473-529] 3.3E-9 - T[731-786] 1.8E-9 - T[835-892] 3.0E-8 - T[877-932] 5.5E-7 - T[943-995] 8.5E-7 - T[980-1038] 4.2E-8 - T[1052-1109] 8.7E-9 - T[1145-1200] 9.2E-7 - T[1232-1289] 2.8E-8 - T[1283-1334] 6.5E-7 - T[1344-1401] 1.3E-8 - T[1368-1426] 1.1E-8 |
| Gene3D |
Collagen_IV_NC_sf (IPR036954) - T[1428-1653] 9.1E-109 |
| ProSiteProfiles |
Collagen_IV_NC (IPR001442) - T[1431-1654] 110.839 |
| SMART |
Collagen_IV_NC (IPR001442) - T[1431-1538] 1.2E-57 - T[1539-1653] 3.0E-64 |
| Pfam |
Collagen_IV_NC (IPR001442) - T[1433-1536] 1.5E-35 - T[1541-1651] 4.4E-41 |
| SUPERFAMILY |
CTDL_fold (IPR016187) - T[1433-1539] 6.36E-42 - T[1540-1651] 4.71E-42 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| CO4A2_HUMAN | 48.289 % | 611 | 0 |
| CO4A1_HUMAN | 40.243 % | 574 | 5.62E-176 |
| CO4A6_HUMAN | 41.145 % | 685 | 0 |