- Transcript 'Cisavi.CG.ENS81.R30....'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R30.1983319-1996169.07577.t
Possible name(s)
COL4A1; COL4A2; COL4A6
Gene model
Location
R30 [1,983,855 / 1,994,102]
Amino acid sequence
Length: 1,471
>Cisavi.CG.ENS81.R30.1983319-1996169.07577.p
GPPGIQGKAGPQGQLGFPGPEGVMGPKGYAGLAGRPGKAGEKGDRGTIGVPGYSGINGVP
GHPGEPGPRGFPGKDGCNGTDGDSGAAGSPEPAFVSVEDMIKGERGESGRLGPKGPSGTP
GRSGLIGPKGYPGKPGPPGKPGLKGSRGPQGHKGIGYQGETGAKGESGPPGLPGNSQFTP
IPGPPGRNGSKGMRGEKGVRGETGYPGFEGAKGREGEKGEKGVRGLAGGRGPTGAAGGER
GMTGRPGIDGTIGMKGERGDQGPIGAPGLPGLQGLQGPIGSPGAPGEAGVPGPTGSNGQP
GVNGFDGPSGEDGLAGNPGLPGNPGLPETIPGENGRDGPPGQTGAPGQSGSRGAPGEPGH
IIMLDGDKMVGPQGSPGIAGLRGEKGLRDAVGETGSPGPPGQDGLPGLSGLPGISGQSGE
PGEPGEPGPNGPRGLDGQKGKSGETGPKGQKGESATLEGEVKGEKGELGLPGGQGEPGIA
GIPGQDGRNGRRGAQGEKGEVGPQGMPGLPGLKGFEGPKGREGRSGQDAFGIPGPLGFKG
EKGDEGFQGPNGFRGQKEAGESIYGAAPKGDKGENGQSGGRGYPGAKGSKGSRGEPGPEG
LTGDDGEKGNVGEPGLPAGRKGEAGLPGQVGLPGDQGERGRTGEVGMKGPQGKPGLSIPG
NPGQKGANGNDGLPGATGSKGSQGFPGLVGLPGPPGFPGLEGTPGLRGLPGADGLAGEKG
ESALVGRRGPPGPTGSDGVAGPRGSIGRKGEVGPPGLPASGELKGEKGQIGLSGRDGDKG
STGIPGETGLPGPPGEDGFPGAPGRPGARGKNGRSGPKGNGGLAGLPGFDGMPGLSGNKG
SPGFPGRDGPKGEGGKPGIKGMVGDAGPPGDYGRNGLPGVEGQKGVKGARGQLGFPGVIG
KPGIAGQPGRAGLPGPVGMVGERGPDGRPGREGRPGLNGENGPKGLQGRRGLPGLSGLDG
QPGQKGSMGINGKTGEDGIPGSNGFDGQPGRRGQKGASGRSNIPGPTGVDGPPGKCLMES
PVGFEGKPGPPGEQGLPGLLGEKGEEGVPGVTGLPEGSPGFSGRQGAPGIKGLPGLPGES
GLDGLPGRQGDVGPSGSTGQTGPKGEKGENGEPGLVGLSGVKGNQGFPGITGKPGFPGLV
GEPGIKGEPGRSIEPSELVTGPKGNMGVPGLPGPPGLIGRSGLPGLQGFKGDQGERGLDG
RDGIPGTHGQRGNPGPQGFIGPKGRAGRNGNPGRAGEPGPAGRVRPPGHLIVKHSQTVDV
PECPAGMTKLWDGYSLLYLEGSEKAHGQDLGGAGSCMPRFNTMPFLYCNTQSVCKYGSRN
DKSYWLSTTAAIPMMPVNVDMVQEYISRCSVCESSSIAMAVHSQDMVIPPCPEGWSGVWL
GYSFAMHTAAGAEGGGQSLSSPGSCLQDFRATPFIECNGARGHCFFYNNQYSFWLTTIPQ
DYQFGTPQMETLKAGNLRTRVSRCQVCTRLN
Nucleotide sequence
Length: 4,413
>Cisavi.CG.ENS81.R30.1983319-1996169.07577.t
GGACCCCCTGGTATTCAAGGCAAAGCAGGTCCTCAGGGACAGCTTGGTTTCCCGGGTCCT
GAAGGTGTTATGGGACCGAAAGGATACGCTGGTCTTGCTGGAAGACCTGGTAAAGCTGGA
GAGAAGGGAGATAGGGGGACAATCGGTGTACCAGGGTATTCAGGTATCAATGGAGTGCCT
GGTCACCCTGGAGAGCCTGGTCCAAGAGGTTTCCCAGGTAAAGATGGTTGCAATGGAACA
GATGGTGACAGTGGTGCAGCTGGTTCACCTGAGCCAGCTTTTGTAAGTGTGGAAGACATG
ATTAAAGGAGAAAGGGGTGAAAGTGGTCGGCTTGGACCTAAAGGACCTTCTGGTACCCCT
GGAAGATCTGGTCTTATTGGCCCCAAGGGTTACCCTGGCAAGCCAGGACCACCTGGTAAA
CCTGGACTCAAAGGTAGCAGAGGACCTCAAGGCCATAAAGGGATCGGTTACCAGGGCGAA
ACTGGAGCCAAGGGTGAATCTGGGCCTCCTGGTTTGCCTGGAAACAGCCAGTTCACACCA
ATTCCAGGACCACCGGGAAGAAATGGTTCCAAGGGAATGAGAGGAGAGAAAGGTGTACGT
GGAGAAACAGGATATCCAGGATTCGAGGGTGCCAAAGGTAGAGAAGGGGAAAAAGGGGAG
AAAGGAGTGCGTGGTTTGGCTGGAGGTCGTGGGCCAACTGGAGCTGCAGGCGGTGAGCGT
GGTATGACAGGGAGGCCTGGCATTGATGGCACGATTGGTATGAAGGGCGAACGTGGTGAT
CAAGGCCCAATAGGAGCTCCAGGGTTACCGGGTCTACAGGGACTACAAGGGCCGATAGGA
TCACCTGGTGCTCCGGGCGAAGCCGGCGTGCCAGGGCCAACGGGGTCCAACGGCCAACCT
GGTGTTAATGGATTCGATGGTCCTTCCGGGGAAGACGGTCTTGCAGGAAATCCTGGTCTT
CCTGGGAATCCAGGTTTACCTGAAACCATTCCTGGGGAAAATGGAAGAGACGGCCCTCCT
GGACAAACTGGGGCCCCAGGGCAGTCTGGGTCCAGAGGTGCACCTGGTGAACCTGGTCAT
ATTATCATGCTGGACGGGGACAAGATGGTCGGGCCACAAGGATCACCTGGGATCGCTGGT
TTGCGAGGAGAAAAGGGCCTTCGAGATGCAGTTGGAGAGACAGGTAGTCCTGGTCCACCT
GGACAGGATGGTCTGCCTGGTTTATCTGGTCTACCGGGTATCAGTGGCCAATCTGGTGAG
CCTGGTGAGCCAGGAGAACCTGGACCTAATGGACCAAGGGGATTAGATGGACAAAAAGGA
AAATCTGGCGAGACTGGGCCAAAAGGCCAGAAAGGAGAATCTGCAACTTTAGAAGGGGAG
GTCAAGGGCGAAAAAGGTGAACTTGGTCTGCCTGGTGGACAAGGAGAACCAGGAATCGCT
GGAATTCCTGGACAAGATGGAAGAAATGGCCGCCGAGGCGCACAAGGAGAAAAGGGAGAA
GTTGGACCACAAGGAATGCCAGGTCTACCTGGTTTGAAAGGATTTGAAGGCCCTAAGGGA
AGAGAGGGAAGATCTGGTCAAGATGCATTTGGGATACCTGGTCCACTTGGTTTTAAGGGA
GAAAAGGGAGATGAAGGATTCCAAGGTCCAAATGGATTCAGAGGACAAAAGGAGGCTGGA
GAATCAATATATGGGGCTGCTCCAAAGGGAGATAAAGGAGAAAATGGGCAATCAGGTGGA
CGTGGGTATCCTGGAGCTAAAGGTTCCAAAGGATCACGCGGAGAGCCAGGGCCAGAAGGC
CTTACTGGGGATGATGGAGAAAAGGGAAATGTTGGAGAACCAGGCTTGCCGGCAGGCAGA
AAGGGTGAAGCAGGTCTTCCTGGTCAAGTTGGTTTACCTGGAGATCAGGGTGAAAGGGGG
CGAACAGGAGAAGTTGGTATGAAAGGACCTCAAGGGAAACCTGGATTGTCCATACCAGGG
AACCCAGGTCAGAAAGGGGCTAACGGCAACGATGGCCTACCTGGTGCAACTGGGTCTAAG
GGAAGCCAAGGGTTCCCAGGTTTGGTCGGTCTCCCTGGTCCCCCTGGATTTCCTGGTTTG
GAGGGAACACCTGGATTAAGAGGGTTGCCTGGAGCAGATGGATTGGCAGGGGAAAAAGGA
GAATCTGCCCTTGTTGGGAGAAGAGGCCCACCAGGACCAACTGGTTCAGATGGTGTCGCT
GGACCTCGGGGATCTATTGGACGCAAAGGGGAGGTTGGGCCACCGGGTCTTCCAGCTAGT
GGGGAGCTAAAGGGAGAAAAGGGACAAATTGGACTAAGTGGAAGAGATGGCGACAAAGGA
TCAACTGGAATACCTGGTGAAACTGGGCTTCCTGGACCACCTGGTGAAGATGGTTTCCCT
GGAGCTCCAGGGCGACCTGGGGCAAGAGGAAAAAATGGAAGATCCGGGCCAAAGGGCAAC
GGTGGCTTAGCTGGCCTACCAGGGTTTGATGGAATGCCTGGTCTATCTGGAAACAAAGGG
TCTCCAGGTTTCCCTGGTAGAGATGGGCCAAAGGGTGAAGGTGGTAAACCTGGAATCAAA
GGAATGGTTGGAGATGCAGGTCCTCCAGGTGATTATGGAAGGAATGGCTTGCCAGGAGTT
GAGGGGCAAAAGGGAGTAAAAGGAGCACGGGGGCAGCTTGGCTTCCCAGGAGTCATCGGA
AAACCGGGAATTGCTGGACAACCGGGAAGAGCTGGCTTACCAGGACCGGTTGGCATGGTT
GGTGAACGCGGTCCTGATGGTAGACCTGGTCGTGAAGGTAGGCCCGGTCTAAATGGAGAA
AATGGTCCAAAGGGTTTGCAAGGACGAAGAGGGTTACCTGGTCTTAGTGGATTGGATGGC
CAACCCGGTCAAAAGGGCAGTATGGGCATTAATGGAAAAACAGGTGAGGATGGGATCCCT
GGTTCAAATGGCTTCGATGGCCAGCCAGGAAGAAGAGGACAAAAAGGTGCTAGTGGCAGA
TCCAACATACCTGGACCAACCGGTGTGGATGGGCCACCTGGTAAGTGTTTAATGGAAAGT
CCAGTTGGATTCGAGGGTAAACCAGGACCTCCTGGAGAGCAAGGTTTGCCAGGATTGCTG
GGGGAAAAGGGAGAAGAAGGTGTTCCAGGAGTTACTGGCCTTCCTGAGGGCTCACCTGGA
TTCAGTGGGCGGCAAGGTGCACCTGGAATCAAAGGTTTGCCTGGATTGCCGGGAGAGAGT
GGCCTTGATGGACTTCCTGGCAGACAAGGCGATGTTGGACCATCTGGCTCCACTGGACAA
ACTGGACCTAAAGGTGAAAAGGGAGAGAATGGAGAGCCTGGACTTGTTGGTTTGTCTGGA
GTGAAAGGAAACCAGGGGTTCCCAGGAATCACTGGTAAACCTGGATTCCCTGGTTTAGTT
GGTGAGCCAGGTATAAAGGGGGAACCAGGCCGATCTATTGAACCAAGTGAACTTGTTACT
GGACCGAAGGGTAATATGGGGGTACCTGGCTTGCCTGGACCACCTGGTTTAATTGGTAGA
TCTGGCCTTCCGGGTCTACAGGGATTTAAGGGTGATCAAGGCGAAAGAGGATTGGATGGC
CGTGATGGAATCCCTGGGACACATGGACAAAGAGGAAATCCTGGCCCACAAGGCTTCATT
GGACCAAAAGGAAGAGCAGGTAGAAATGGAAATCCAGGCCGAGCTGGCGAACCTGGACCT
GCTGGACGTGTTCGACCCCCCGGGCATCTTATCGTTAAACACAGTCAAACTGTAGATGTA
CCAGAATGCCCCGCCGGTATGACGAAACTTTGGGATGGCTACAGTTTATTGTATCTGGAA
GGAAGTGAAAAAGCTCACGGACAAGATCTAGGGGGTGCAGGGTCTTGCATGCCACGGTTT
AACACGATGCCGTTCCTCTACTGCAACACACAAAGTGTGTGCAAATATGGCAGCAGAAAC
GACAAGTCTTACTGGCTCTCAACCACAGCTGCTATTCCAATGATGCCAGTCAACGTTGAC
ATGGTTCAAGAATACATCAGTCGTTGCTCAGTTTGTGAGTCATCTTCCATCGCCATGGCA
GTGCACAGTCAAGATATGGTGATACCACCTTGTCCAGAAGGGTGGAGTGGTGTATGGCTG
GGCTACAGTTTTGCAATGCACACTGCTGCTGGTGCTGAAGGCGGTGGCCAGTCGCTGTCT
AGCCCTGGATCTTGCTTGCAGGATTTCCGCGCGACGCCTTTCATTGAATGCAATGGTGCT
CGCGGCCACTGCTTCTTTTACAACAACCAATACAGTTTCTGGTTAACTACGATCCCACAA
GATTATCAATTCGGAACTCCTCAAATGGAGACTCTAAAGGCAGGAAACTTAAGAACAAGG
GTTAGCCGTTGCCAAGTCTGTACAAGGTTGAAT
| Pfam |
Collagen (IPR008160) - T[1-55] 7.3E-8 - T[33-89] 7.0E-9 - T[103-154] 1.8E-7 - T[156-211] 1.1E-6 - T[270-325] 2.9E-9 - T[371-423] 8.9E-8 - T[569-615] 1.8E-6 - T[660-718] 7.2E-9 - T[699-756] 7.9E-8 - T[764-820] 1.8E-8 - T[858-916] 3.3E-9 - T[915-972] 3.7E-8 - T[957-1014] 3.3E-7 - T[1090-1149] 8.0E-10 - T[1161-1216] 9.7E-9 - T[1188-1243] 2.4E-8 |
| Gene3D |
Collagen_IV_NC_sf (IPR036954) - T[1245-1470] 9.7E-109 |
| ProSiteProfiles |
Collagen_IV_NC (IPR001442) - T[1248-1471] 110.71 |
| SMART |
Collagen_IV_NC (IPR001442) - T[1248-1355] 3.3E-57 - T[1356-1470] 3.0E-64 |
| Pfam |
Collagen_IV_NC (IPR001442) - T[1250-1353] 1.3E-35 - T[1358-1468] 3.8E-41 |
| SUPERFAMILY |
CTDL_fold (IPR016187) - T[1250-1356] 7.53E-42 - T[1357-1468] 4.24E-42 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| CO4A2_HUMAN | 47.404 % | 617 | 0 |
| CO4A1_HUMAN | 40.599 % | 539 | 7.57E-165 |
| CO4A6_HUMAN | 42.763 % | 686 | 0 |