- Transcript 'Cisavi.CG.ENS81.R30....'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R30.1983319-1996169.07578.t
Possible name(s)
COL4A1; COL4A2; COL4A6
Gene model
Location
R30 [1,983,861 / 1,994,102]
Amino acid sequence
Length: 1,611
>Cisavi.CG.ENS81.R30.1983319-1996169.07578.p
GPPGIQGKAGPQGQLGFPGPEGVMGPKGYAGLAGRPGKAGEKGDRGTIGVPGYSGINGVP
GHPGEPGPRGFPGKDGCNGTDGDSGAAGSPGFNGVDGIPGDAGPKGSKGEPAFVSVEDMI
KGERGESGRLGPKGPSGTPGRSGLIGPKGYPGKPGPPGETGAKGESGPPGLPGSPGFLTG
QPDSQFTPIPGPPGRNGSKGAKGREGEKGEKGVRGLAGGRGPTGAAGVNGYDGAQGERGM
TGRPGIDGTIGMKGERGDQGPIGAPGLPGLQGLQGPIGSPGAPGEAGVPGPTGSNGQPGV
NGFDGPSGEDGLAGNPGLPGNPGLPGVGEKGEIGIRGLNGKNGQDGVPGLSGEQGPRGLP
GVSGETIPGENGRDGPPGQTGAPGQSGSRGAPGEPGHIIMLDGDKMVGPQGSPGIAGLRG
EKGLRGVNGVDGSVGQKGEKGGECDCQDAVGETGSPGPPGQDGLPGLSGLPGISGQSGEP
GEPGEPGPNGPRGLDGQKGKSGETGPKGQKGESATLEGEVKGEKGELGLPGGQGEPGIAG
IPGQDGRNGRRGAQGEKGEVGPQGMPGLPGLKGFEGPKGREGRSGQDAFGIPGPLGFKGE
KGDEGFQGPNGFRGQKDKGENGQSGGRGYPGAKGSKGSRGEPGPEGLTGDDGEKGNVGEP
GLPALPGAPGRKGEAGLPGQVGLPGDQGERGRTGEVGMKGPQGKPGLSIPGNPGQKGANG
NDGLPGATGSKGSQGFPGLVGLPGPPGFPGLEGTPGLRGLPGADGLAESALVGRRGPPGP
TGSDGVAGPRGSIGRKGEVGPPGLPASGELKGEKGQIGLSGRDGQLGVKGDKGSTGIPGE
TGLPGPPGEDGFPGAPGRPGARGKNGRSGPKGNGGLAGLPGFDGMPGLSGNKGSPGFPGR
DGPKGEGGKPGIKGMVGDAGPPGDYGRNGLPGVEGQKGVKGARGQLGFPGVIGKPGIAGQ
PGRAGLPGPVGLKGQKANLGIATFLYYSGMVGERGPDGRPGREGRPGLNGENGPKGLQGR
RGLPGLSGLDGQPGQKGSMGINGKTGNKGVIGMKGGRGLPGLDGRDGLNGEPGTKGRAGT
KGEDGIPGSNGFDGQPGRRGQKGASGRSNIPGPTGVDGPPGKCLMERIKGEVGPPGLFGE
SGPFGPKGMRGNPGPVGFEGKPGPPGEQGLPGLLGEKGEEGVPGVTGLPGRQGLPGREGS
PGFSGRQGAPGIKGLPGLPGESGLDGLPGRQGDVGPSGSTGQTGPKGEKGENGEPGLVGL
SGVKGNQGFPGITGKPGFPGLVGEPGIKGEPGRSIEPSELVTGPKGNMGVPGLPGPPGLI
GRSGLPGLQGFKGDQGERGLDGRDGIPGTHGQRGNPGPQGFIGPKGRAGRNGNPGRAGEP
GPAGRVRPPGHLIVKHSQTVDVPECPAGMTKLWDGYSLLYLEGSEKAHGQDLGGAGSCMP
RFNTMPFLYCNTQSVCKYGSRNDKSYWLSTTAAIPMMPVNVDMVRKYISRCSVCESSSIA
MAVHSQDMVIPPCPEGWSGVWLGYSFAMHTAAGAEGGGQSLSSPGSCLQDFRATPFIECN
GARGHCFFYNNQYSFWLTTIPQDYQFGTPQMETLKAGNLRTRVSRCQVCTR
Nucleotide sequence
Length: 4,833
>Cisavi.CG.ENS81.R30.1983319-1996169.07578.t
GGACCCCCTGGTATTCAAGGCAAAGCAGGTCCTCAGGGACAGCTTGGTTTCCCGGGTCCT
GAAGGTGTTATGGGACCGAAAGGATACGCTGGTCTTGCTGGAAGACCTGGTAAAGCTGGA
GAGAAGGGAGATAGGGGGACAATCGGTGTACCAGGGTATTCAGGTATCAATGGAGTGCCT
GGTCACCCTGGAGAGCCTGGTCCAAGAGGTTTCCCAGGTAAAGATGGTTGCAATGGAACA
GATGGTGACAGTGGTGCAGCTGGTTCACCTGGTTTTAATGGGGTTGATGGAATACCGGGA
GATGCTGGACCTAAGGGCTCAAAGGGAGAGCCAGCTTTTGTAAGTGTGGAAGACATGATT
AAAGGAGAAAGGGGTGAAAGTGGTCGGCTTGGACCTAAAGGACCTTCTGGTACCCCTGGA
AGATCTGGTCTTATTGGCCCCAAGGGTTACCCTGGCAAGCCAGGACCACCTGGCGAAACT
GGAGCCAAGGGTGAATCTGGGCCTCCTGGTTTGCCTGGAAGTCCTGGATTTTTAACTGGT
CAGCCAGACAGCCAGTTCACACCAATTCCAGGACCACCGGGAAGAAATGGTTCCAAGGGT
GCCAAAGGTAGAGAAGGGGAAAAAGGGGAGAAAGGAGTGCGTGGTTTGGCTGGAGGTCGT
GGGCCAACTGGAGCTGCAGGCGTAAATGGATATGATGGTGCACAGGGTGAGCGTGGTATG
ACAGGGAGGCCTGGCATTGATGGCACGATTGGTATGAAGGGCGAACGTGGTGATCAAGGC
CCAATAGGAGCTCCAGGGTTACCGGGTCTACAGGGACTACAAGGGCCGATAGGATCACCT
GGTGCTCCGGGCGAAGCCGGCGTGCCAGGGCCAACGGGGTCCAACGGCCAACCTGGTGTT
AATGGATTCGATGGTCCTTCCGGGGAAGACGGTCTTGCAGGAAATCCTGGTCTTCCTGGG
AATCCAGGTTTACCTGGTGTTGGAGAAAAGGGAGAGATAGGAATTAGAGGTTTAAATGGA
AAGAATGGGCAAGATGGCGTCCCTGGTCTTAGTGGGGAACAAGGTCCAAGAGGACTGCCA
GGAGTATCTGGAGAAACCATTCCTGGGGAAAATGGAAGAGACGGCCCTCCTGGACAAACT
GGGGCCCCAGGGCAGTCTGGGTCCAGAGGTGCACCTGGTGAACCTGGTCATATTATCATG
CTGGACGGGGACAAGATGGTCGGGCCACAAGGATCACCTGGGATCGCTGGTTTGCGAGGA
GAAAAGGGCCTTCGAGGTGTAAATGGTGTGGATGGATCTGTTGGACAGAAAGGAGAAAAA
GGAGGGGAATGTGACTGTCAAGATGCAGTTGGAGAGACAGGTAGTCCTGGTCCACCTGGA
CAGGATGGTCTGCCTGGTTTATCTGGTCTACCGGGTATCAGTGGCCAATCTGGTGAGCCT
GGTGAGCCAGGAGAACCTGGACCTAATGGACCAAGGGGATTAGATGGACAAAAAGGAAAA
TCTGGCGAGACTGGGCCAAAAGGCCAGAAAGGAGAATCTGCAACTTTAGAAGGGGAGGTC
AAGGGCGAAAAAGGTGAACTTGGTCTGCCTGGTGGACAAGGAGAACCAGGAATCGCTGGA
ATTCCTGGACAAGATGGAAGAAATGGCCGCCGAGGCGCACAAGGAGAAAAGGGAGAAGTT
GGACCACAAGGAATGCCAGGTCTACCTGGTTTGAAAGGATTTGAAGGCCCTAAGGGAAGA
GAGGGAAGATCTGGTCAAGATGCATTTGGGATACCTGGTCCACTTGGTTTTAAGGGAGAA
AAGGGAGATGAAGGATTCCAAGGTCCAAATGGATTCAGAGGACAAAAGGATAAAGGAGAA
AATGGGCAATCAGGTGGACGTGGGTATCCTGGAGCTAAAGGTTCCAAAGGATCACGCGGA
GAGCCAGGGCCAGAAGGCCTTACTGGGGATGATGGAGAAAAGGGAAATGTTGGAGAACCA
GGCTTGCCGGCGTTACCTGGTGCACCAGGTAGAAAGGGTGAAGCAGGTCTTCCTGGTCAA
GTTGGTTTACCTGGAGATCAGGGTGAAAGGGGGCGAACAGGAGAAGTTGGTATGAAAGGA
CCTCAAGGGAAACCTGGATTGTCCATACCAGGGAACCCAGGTCAGAAAGGGGCTAACGGC
AACGATGGCCTACCTGGTGCAACTGGGTCTAAGGGAAGCCAAGGGTTCCCAGGTTTGGTC
GGTCTCCCTGGTCCCCCTGGATTTCCTGGTTTGGAGGGAACACCTGGATTAAGAGGGTTG
CCTGGAGCAGATGGATTGGCAGAATCTGCCCTTGTTGGGAGAAGAGGCCCACCAGGACCA
ACTGGTTCAGATGGTGTCGCTGGACCTCGGGGATCTATTGGACGCAAAGGGGAGGTTGGG
CCACCGGGTCTTCCAGCTAGTGGGGAGCTAAAGGGAGAAAAGGGACAAATTGGACTAAGT
GGAAGAGATGGTCAACTTGGTGTCAAAGGCGACAAAGGATCAACTGGAATACCTGGTGAA
ACTGGGCTTCCTGGACCACCTGGTGAAGATGGTTTCCCTGGAGCTCCAGGGCGACCTGGG
GCAAGAGGAAAAAATGGAAGATCCGGGCCAAAGGGCAACGGTGGCTTAGCTGGCCTACCA
GGGTTTGATGGAATGCCTGGTCTATCTGGAAACAAAGGGTCTCCAGGTTTCCCTGGTAGA
GATGGGCCAAAGGGTGAAGGTGGTAAACCTGGAATCAAAGGAATGGTTGGAGATGCAGGT
CCTCCAGGTGATTATGGAAGGAATGGCTTGCCAGGAGTTGAGGGGCAAAAGGGAGTAAAA
GGAGCACGGGGGCAGCTTGGCTTCCCAGGAGTCATCGGAAAACCGGGAATTGCTGGACAA
CCGGGAAGAGCTGGCTTACCAGGACCGGTTGGTCTCAAAGGACAGAAAGCGAACTTAGGC
ATTGCTACGTTTCTTTATTATTCAGGCATGGTTGGTGAACGCGGTCCTGATGGTAGACCT
GGTCGTGAAGGTAGGCCCGGTCTAAATGGAGAAAATGGTCCAAAGGGTTTGCAAGGACGA
AGAGGGTTACCTGGTCTTAGTGGATTGGATGGCCAACCCGGTCAAAAGGGCAGTATGGGC
ATTAATGGAAAAACAGGAAACAAAGGTGTAATAGGAATGAAAGGGGGCCGTGGTTTGCCA
GGTTTGGATGGTAGAGATGGCTTGAATGGTGAACCAGGCACAAAAGGAAGGGCTGGAACT
AAAGGTGAGGATGGGATCCCTGGTTCAAATGGCTTCGATGGCCAGCCAGGAAGAAGAGGA
CAAAAAGGTGCTAGTGGCAGATCCAACATACCTGGACCAACCGGTGTGGATGGGCCACCT
GGTAAGTGTTTAATGGAAAGAATTAAAGGAGAGGTCGGCCCACCTGGTTTATTTGGTGAG
TCAGGACCGTTTGGACCAAAGGGCATGCGTGGAAACCCAGGTCCAGTTGGATTCGAGGGT
AAACCAGGACCTCCTGGAGAGCAAGGTTTGCCAGGATTGCTGGGGGAAAAGGGAGAAGAA
GGTGTTCCAGGAGTTACTGGCCTTCCTGGTCGGCAAGGTTTGCCTGGGAGAGAGGGCTCA
CCTGGATTCAGTGGGCGGCAAGGTGCACCTGGAATCAAAGGTTTGCCTGGATTGCCGGGA
GAGAGTGGCCTTGATGGACTTCCTGGCAGACAAGGCGATGTTGGACCATCTGGCTCCACT
GGACAAACTGGACCTAAAGGTGAAAAGGGAGAGAATGGAGAGCCTGGACTTGTTGGTTTG
TCTGGAGTGAAAGGAAACCAGGGGTTCCCAGGAATCACTGGTAAACCTGGATTCCCTGGT
TTAGTTGGTGAGCCAGGTATAAAGGGGGAACCAGGCCGATCTATTGAACCAAGTGAACTT
GTTACTGGACCGAAGGGTAATATGGGGGTACCTGGCTTGCCTGGACCACCTGGTTTAATT
GGTAGATCTGGCCTTCCGGGTCTACAGGGATTTAAGGGTGATCAAGGCGAAAGAGGATTG
GATGGCCGTGATGGAATCCCTGGGACACATGGACAAAGAGGAAATCCTGGCCCACAAGGC
TTCATTGGACCAAAAGGAAGAGCAGGTAGAAATGGAAATCCAGGCCGAGCTGGCGAACCT
GGACCTGCTGGACGTGTTCGACCCCCCGGGCATCTTATCGTTAAACACAGTCAAACTGTA
GATGTACCAGAATGCCCCGCCGGTATGACGAAACTTTGGGATGGCTACAGTTTATTGTAT
CTGGAAGGAAGTGAAAAAGCTCACGGACAAGATCTAGGGGGTGCAGGGTCTTGCATGCCA
CGGTTTAACACGATGCCGTTCCTCTACTGCAACACACAAAGTGTGTGCAAATATGGCAGC
AGAAACGACAAGTCTTACTGGCTCTCAACCACAGCTGCTATTCCAATGATGCCAGTCAAC
GTTGACATGGTAAGAAAATACATCAGTCGTTGCTCAGTTTGTGAGTCATCTTCCATCGCC
ATGGCAGTGCACAGTCAAGATATGGTGATACCACCTTGTCCAGAAGGGTGGAGTGGTGTA
TGGCTGGGCTACAGTTTTGCAATGCACACTGCTGCTGGTGCTGAAGGCGGTGGCCAGTCG
CTGTCTAGCCCTGGATCTTGCTTGCAGGATTTCCGCGCGACGCCTTTCATTGAATGCAAT
GGTGCTCGCGGCCACTGCTTCTTTTACAACAACCAATACAGTTTCTGGTTAACTACGATC
CCACAAGATTATCAATTCGGAACTCCTCAAATGGAGACTCTAAAGGCAGGAAACTTAAGA
ACAAGGGTTAGCCGTTGCCAAGTCTGTACAAGG
| Pfam |
Collagen (IPR008160) - T[1-58] 2.2E-8 - T[52-110] 4.6E-9 - T[122-176] 3.2E-8 - T[190-245] 4.1E-7 - T[229-285] 6.2E-8 - T[340-396] 9.2E-7 - T[453-509] 4.2E-9 - T[528-582] 1.8E-7 - T[658-706] 1.1E-6 - T[711-766] 1.4E-9 - T[815-873] 1.7E-6 - T[917-975] 2.1E-8 - T[989-1044] 4.0E-9 - T[1031-1085] 1.7E-6 - T[1133-1190] 1.3E-8 - T[1184-1236] 1.2E-7 - T[1232-1291] 7.5E-10 - T[1303-1360] 1.1E-6 - T[1330-1385] 2.7E-8 |
| Gene3D |
Collagen_IV_NC_sf (IPR036954) - T[1387-1611] 1.4E-108 |
| ProSiteProfiles |
Collagen_IV_NC (IPR001442) - T[1390-1611] 111.694 |
| SMART |
Collagen_IV_NC (IPR001442) - T[1390-1497] 1.2E-57 - T[1498-1611] 5.6E-62 |
| SUPERFAMILY |
CTDL_fold (IPR016187) - T[1392-1498] 6.12E-42 - T[1499-1610] 6.12E-42 |
| Pfam |
Collagen_IV_NC (IPR001442) - T[1392-1495] 1.4E-35 - T[1500-1610] 4.3E-41 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| CO4A2_HUMAN | 46.756 % | 622 | 0 |
| CO4A3_HUMAN | 39.94 % | 390 | 1.0E-111 |
| CO4A6_HUMAN | 40.453 % | 679 | 0 |