- Transcript 'Cisavi.CG.ENS81.R30....'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R30.1983319-1996169.07579.t
Possible name(s)
COL4A1; COL4A2; COL4A6
Gene model
Location
R30 [1,983,884 / 1,994,102]
Amino acid sequence
Length: 1,426
>Cisavi.CG.ENS81.R30.1983319-1996169.07579.p
GPPGIQGKAGPQGQLGFPGPEGVMGPKGYAGLAGRPGKAGEKGDRVSQLRINIGKRVVHN
MRYSGINGVPGHPGEPGPRGFPGKDGCNGTDGDSGAAGSPERGESGRLGPKGPSGTPGRS
GLIGPKGYPGKPGPPGLQGPIGSPGAPGEAGVPGPTGSNGQPGVNGFDGPSGEDGLAGNP
GVSGETIPGENGRDGPPGQTGAPGQSGSRGAPGEPGHIIMLDGDKMVGPQGSPGIAGLRG
EKGLRGVNGVDGSVGQKGEKGGECDCQDAVGETGSPGPPGQDGLPGLSGLPGISGQSGEP
GEPGEPGPNGPRGLDVRKSGETGPKGQKGESATLEGEVKGEKGELGLPGGQGEPGIAGIP
GQDGRNGRRGAQGEKGEVGPQGMPGLPGLKGFEGPKGREGRSGQDAFGIPGPLGFKGEKG
DEGFQGPNGFRGQKEAGESIYGAAPKGDKGENGQSGGRGYPGAKGSKGSRGEPGPEGLTG
DDGEKGNVGEPGLPALPGAPGRKGEAGLPGQVGLPGDQGERGRTGEVGMKGPQGKPGLSI
PGNPGQKGANGNDGLPGATGSKGSQGFPGLVGLPGPPGFPGLEGTPGLRGLPGADGLAGE
KGESALVGRRGPPGPTGSDGVAGPRGSIGRKGEVGPPGLPASQLGVKGDKGSTGIPGETG
LPGPPGEDGFPGAPGRPGARGKNGRSGPKGNGGLAGLPGFDGMPGLSGNKGSPGKPGATG
PQGFKGEKGSVPPGAQIQVPAGEPGEAGPPGEPGVQGFPGRDGPKGEGGKPGIKGMVGDA
GPPGDYGRNGLPGVEGQKGVKGARGQLGFPGVIGKPGIAGQPGRAGLPGPVGLKGQKANL
GIATFLYYSGMVGERGPDGRPGREGRPGLNGENGPKGLQGRRGLPGLSGLDGQPGQKGSV
IGMKGGRGLPGLDGRDGLNGEPGTKGRAGTKVTMTLDTLTLILGEDGIPGSNGFDGQPGR
RGQKGASGRSNIPGPTGVDGPPGKFGFEGKPGPPGEQGLPGLLGEKGEEGVPGVTGLPGL
PGREGSPGFSGRQGAPGIKGLPGLPGESGLDGLPGRQGDVGPSGSTGQTGPKGEKGENGE
PGLVGLSGVKGNQGFPGITGKPGFPGLVGEPGIKGEPGRSIEPSELVTGPKGNMGVPGLP
GPPGLIGRSGLPGLQGFKGDQGERGLDGRDGIPGTHGQRGNPGPQGFIGPKGRAGTQPII
LFGAFIQNHKFPGRNGNPGRAGEPGPAGRVRPPGHLIVKHSQTVDVPECPAGMTKLWDGY
SLLYLEGSEKAHGQDLGGAGSCMPRFNTMPFLYCNTQSVCKYGSRNDKSYWLSTTAAIPM
MPVNVDMVRKYISRCSVCESSSIAMAVHSQDMVIPPCPEGWSGVWLGYSFAMHTAAGAEG
GGQSLSSPGSCLQDFRATPFIECNGARGHCFFYNNQYSFWLTTIPQ
Nucleotide sequence
Length: 4,342
>Cisavi.CG.ENS81.R30.1983319-1996169.07579.t
GGACCCCCTGGTATTCAAGGCAAAGCAGGTCCTCAGGGACAGCTTGGTTTCCCGGGTCCT
GAAGGTGTTATGGGACCGAAAGGATACGCTGGTCTTGCTGGAAGACCTGGTAAAGCTGGA
GAGAAGGGAGATAGGGTTTCACAACTACGCATTAATATAGGTAAAAGGGTGGTTCATAAC
ATGAGGTATTCAGGTATCAATGGAGTGCCTGGTCACCCTGGAGAGCCTGGTCCAAGAGGT
TTCCCAGGTAAAGATGGTTGCAATGGAACAGATGGTGACAGTGGTGCAGCTGGTTCACCT
GAAAGGGGTGAAAGTGGTCGGCTTGGACCTAAAGGACCTTCTGGTACCCCTGGAAGATCT
GGTCTTATTGGCCCCAAGGGTTACCCTGGCAAGCCAGGACCACCTGGACTACAAGGGCCG
ATAGGATCACCTGGTGCTCCGGGCGAAGCCGGCGTGCCAGGGCCAACGGGGTCCAACGGC
CAACCTGGTGTTAATGGATTCGATGGTCCTTCCGGGGAAGACGGTCTTGCAGGAAATCCT
GGAGTATCTGGAGAAACCATTCCTGGGGAAAATGGAAGAGACGGCCCTCCTGGACAAACT
GGGGCCCCAGGGCAGTCTGGGTCCAGAGGTGCACCTGGTGAACCTGGTCATATTATCATG
CTGGACGGGGACAAGATGGTCGGGCCACAAGGATCACCTGGGATCGCTGGTTTGCGAGGA
GAAAAGGGCCTTCGAGGTGTAAATGGTGTGGATGGATCTGTTGGACAGAAAGGAGAAAAA
GGAGGGGAATGTGACTGTCAAGATGCAGTTGGAGAGACAGGTAGTCCTGGTCCACCTGGA
CAGGATGGTCTGCCTGGTTTATCTGGTCTACCGGGTATCAGTGGCCAATCTGGTGAGCCT
GGTGAGCCAGGAGAACCTGGACCTAATGGACCAAGGGGATTAGATGTGAGAAAATCTGGC
GAGACTGGGCCAAAAGGCCAGAAAGGAGAATCTGCAACTTTAGAAGGGGAGGTCAAGGGC
GAAAAAGGTGAACTTGGTCTGCCTGGTGGACAAGGAGAACCAGGAATCGCTGGAATTCCT
GGACAAGATGGAAGAAATGGCCGCCGAGGCGCACAAGGAGAAAAGGGAGAAGTTGGACCA
CAAGGAATGCCAGGTCTACCTGGTTTGAAAGGATTTGAAGGCCCTAAGGGAAGAGAGGGA
AGATCTGGTCAAGATGCATTTGGGATACCTGGTCCACTTGGTTTTAAGGGAGAAAAGGGA
GATGAAGGATTCCAAGGTCCAAATGGATTCAGAGGACAAAAGGAGGCTGGAGAATCAATA
TATGGGGCTGCTCCAAAGGGAGATAAAGGAGAAAATGGGCAATCAGGTGGACGTGGGTAT
CCTGGAGCTAAAGGTTCCAAAGGATCACGCGGAGAGCCAGGGCCAGAAGGCCTTACTGGG
GATGATGGAGAAAAGGGAAATGTTGGAGAACCAGGCTTGCCGGCGTTACCTGGTGCACCA
GGTAGAAAGGGTGAAGCAGGTCTTCCTGGTCAAGTTGGTTTACCTGGAGATCAGGGTGAA
AGGGGGCGAACAGGAGAAGTTGGTATGAAAGGACCTCAAGGGAAACCTGGATTGTCCATA
CCAGGGAACCCAGGTCAGAAAGGGGCTAACGGCAACGATGGCCTACCTGGTGCAACTGGG
TCTAAGGGAAGCCAAGGGTTCCCAGGTTTGGTCGGTCTCCCTGGTCCCCCTGGATTTCCT
GGTTTGGAGGGAACACCTGGATTAAGAGGGTTGCCTGGAGCAGATGGATTGGCAGGGGAA
AAAGGAGAATCTGCCCTTGTTGGGAGAAGAGGCCCACCAGGACCAACTGGTTCAGATGGT
GTCGCTGGACCTCGGGGATCTATTGGACGCAAAGGGGAGGTTGGGCCACCGGGTCTTCCA
GCTAGTCAACTTGGTGTCAAAGGCGACAAAGGATCAACTGGAATACCTGGTGAAACTGGG
CTTCCTGGACCACCTGGTGAAGATGGTTTCCCTGGAGCTCCAGGGCGACCTGGGGCAAGA
GGAAAAAATGGAAGATCCGGGCCAAAGGGCAACGGTGGCTTAGCTGGCCTACCAGGGTTT
GATGGAATGCCTGGTCTATCTGGAAACAAAGGGTCTCCAGGAAAGCCTGGTGCCACCGGT
CCTCAAGGGTTTAAAGGAGAAAAGGGATCTGTCCCCCCTGGTGCCCAGATTCAGGTGCCA
GCTGGGGAACCAGGAGAGGCAGGACCACCTGGAGAGCCTGGTGTTCAGGGTTTCCCTGGT
AGAGATGGGCCAAAGGGTGAAGGTGGTAAACCTGGAATCAAAGGAATGGTTGGAGATGCA
GGTCCTCCAGGTGATTATGGAAGGAATGGCTTGCCAGGAGTTGAGGGGCAAAAGGGAGTA
AAAGGAGCACGGGGGCAGCTTGGCTTCCCAGGAGTCATCGGAAAACCGGGAATTGCTGGA
CAACCGGGAAGAGCTGGCTTACCAGGACCGGTTGGTCTCAAAGGACAGAAAGCGAACTTA
GGCATTGCTACGTTTCTTTATTATTCAGGCATGGTTGGTGAACGCGGTCCTGATGGTAGA
CCTGGTCGTGAAGGTAGGCCCGGTCTAAATGGAGAAAATGGTCCAAAGGGTTTGCAAGGA
CGAAGAGGGTTACCTGGTCTTAGTGGATTGGATGGCCAACCCGGTCAAAAGGGCAGTGTA
ATAGGAATGAAAGGGGGCCGTGGTTTGCCAGGTTTGGATGGTAGAGATGGCTTGAATGGT
GAACCAGGCACAAAAGGAAGGGCTGGAACTAAAGTGACAATGACTCTTGATACATTGACT
CTTATATTAGGTGAGGATGGGATCCCTGGTTCAAATGGCTTCGATGGCCAGCCAGGAAGA
AGAGGACAAAAAGGTGCTAGTGGCAGATCCAACATACCTGGACCAACCGGTGTGGATGGG
CCACCTGGTAAGTTTGGATTCGAGGGTAAACCAGGACCTCCTGGAGAGCAAGGTTTGCCA
GGATTGCTGGGGGAAAAGGGAGAAGAAGGTGTTCCAGGAGTTACTGGCCTTCCTGGTTTG
CCTGGGAGAGAGGGCTCACCTGGATTCAGTGGGCGGCAAGGTGCACCTGGAATCAAAGGT
TTGCCTGGATTGCCGGGAGAGAGTGGCCTTGATGGACTTCCTGGCAGACAAGGCGATGTT
GGACCATCTGGCTCCACTGGACAAACTGGACCTAAAGGTGAAAAGGGAGAGAATGGAGAG
CCTGGACTTGTTGGTTTGTCTGGAGTGAAAGGAAACCAGGGGTTCCCAGGAATCACTGGT
AAACCTGGATTCCCTGGTTTAGTTGGTGAGCCAGGTATAAAGGGGGAACCAGGCCGATCT
ATTGAACCAAGTGAACTTGTTACTGGACCGAAGGGTAATATGGGGGTACCTGGCTTGCCT
GGACCACCTGGTTTAATTGGTAGATCTGGCCTTCCGGGTCTACAGGGATTTAAGGGTGAT
CAAGGCGAAAGAGGATTGGATGGCCGTGATGGAATCCCTGGGACACATGGACAAAGAGGA
AATCCTGGCCCACAAGGCTTCATTGGACCAAAAGGAAGAGCAGGTACACAACCCATCATT
CTTTTTGGTGCATTTATTCAAAATCATAAATTTCCAGGTAGAAATGGAAATCCAGGCCGA
GCTGGCGAACCTGGACCTGCTGGACGTGTTCGACCCCCCGGGCATCTTATCGTTAAACAC
AGTCAAACTGTAGATGTACCAGAATGCCCCGCCGGTATGACGAAACTTTGGGATGGCTAC
AGTTTATTGTATCTGGAAGGAAGTGAAAAAGCTCACGGACAAGATCTAGGGGGTGCAGGG
TCTTGCATGCCACGGTTTAACACGATGCCGTTCCTCTACTGCAACACACAAAGTGTGTGC
AAATATGGCAGCAGAAACGACAAGTCTTACTGGCTCTCAACCACAGCTGCTATTCCAATG
ATGCCAGTCAACGTTGACATGGTAAGAAAATACATCAGTCGTTGCTCAGTTTGTGAGTCA
TCTTCCATCGCCATGGCAGTGCACAGTCAAGATATGGTGATACCACCTTGTCCAGAAGGG
TGGAGTGGTGTATGGCTGGGCTACAGTTTTGCAATGCACACTGCTGCTGGTGCTGAAGGC
GGTGGCCAGTCGCTGTCTAGCCCTGGATCTTGCTTGCAGGATTTCCGCGCGACGCCTTTC
ATTGAATGCAATGGTGCTCGCGGCCACTGCTTCTTTTACAACAACCAATACAGTTTCTGG
TTAACTACGATCCCACAAGATTATCAATTCGGAACTCCTCAAATGGAGACTCTAAAGGCA
GGAAACTTAAGAACAAGGGTTA
| Pfam |
Collagen (IPR008160) - T[271-330] 2.6E-7 - T[446-498] 1.4E-6 - T[542-600] 1.9E-9 - T[581-638] 4.6E-8 - T[675-730] 4.4E-7 - T[740-797] 2.4E-7 - T[778-836] 2.0E-8 - T[850-898] 4.7E-8 - T[944-1001] 1.2E-8 - T[989-1047] 4.5E-7 |
| Gene3D |
Collagen_IV_NC_sf (IPR036954) - T[1232-1426] 2.1E-96 |
| SMART |
Collagen_IV_NC (IPR001442) - T[1234-1341] 1.2E-57 - T[1342-1425] 3.4E-36 |
| ProSiteProfiles |
Collagen_IV_NC (IPR001442) - T[1234-1426] 102.46 |
| Pfam |
Collagen_IV_NC (IPR001442) - T[1236-1339] 1.2E-35 - T[1344-1424] 5.4E-32 |
| SUPERFAMILY |
CTDL_fold (IPR016187) - T[1236-1342] 5.42E-42 - T[1343-1424] 1.95E-32 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| CO4A2_HUMAN | 45.983 % | 560 | 1.76E-172 |
| CO4A3_HUMAN | 40.364 % | 356 | 5.68E-101 |
| CO4A6_HUMAN | 42.295 % | 615 | 0 |