- Transcript 'Cisavi.CG.ENS81.R9.1...' >
- Transcript 'Cisavi.CG.ENS81.R30....'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R30.1983319-1996169.07580.t
Possible name(s)
COL4A1; COL4A2; COL4A6
Gene model
Location
R30 [1,983,884 / 1,994,102]
Amino acid sequence
Length: 1,401
>Cisavi.CG.ENS81.R30.1983319-1996169.07580.p
GPPGIQGKAGPQGQLGFPGPEGVMGPKGYAGLAGRPGKAGEKGDRGTIGVPGYSGINGVP
GHPGEPGPRGFPGKDGCNGTDGDSGAAGSPGFNGGDAGPKGSKGEPAFVSVEDMIKGERG
ESGRLGPKGPSGTPGRSGSRGPQGHKGIGYQGETGAKGESGPPGLPGSPGFLTGQPDSQF
TPIPGPPGRNGSKGAKGREGEKGEKGVRGLAGGRGPTGAAGGERGMTGRPGIDGTIGMKG
ERGDQGPIGAPGLPGLQGLQGPIGSPGAPGEAGVPGPTGSNGQPGVNGFDGPSGEDGLAG
NPGLPGNPGLPGVGEKGEIGIRGLNGKNGQDGVPGLSGEQGPRGLPGVSGETIPGENGRD
GPPGQTGAPGQSGSRGAPGEPGHIIMLDGDKMVGPQGSPGIAGLRGEKGLRGVNGVDGSV
GQKGEKGGECDCQDAVGETGSPGPPGQDGLPGLSGLPGISGQSGEPGEPGEPGPNGPRGL
DGEKGELGLPGGQGEPGIAGIPGQDGRNGRRGAQGEKGEVGPQGMPGLPGLKGFEGPKGR
EGRSGQDAFGIPGPLGFKGEKGDEGFQGPNGFRGQKDKGENGQSGGRGYPGAKGSKGSRG
EPGPEGLTGDDGEKGNVGEPGLPALPGAPGRKGEAGLPGQVGLPGDQGERGRTGEVGMKG
PQGKPGLSIPGNPGQKGANGNDGLPGATGSKGSQGFPGDKGSTGIPGETGLPGPPGEDGF
PGAPGRPGARGKNGRSGPKGNGGLAGLPGVSRFVLFNDFALEKLIYFLMLSGKPGATDGP
KGEGGKPGIKGMVGDAGPPGDYGRNGLPGVEGQKGVKGARGQLGFPGVIGKPGIAGQPGR
AGLPGPVGLKGQKGMVGERGPDGRPGREGRPGLNGENGPKGLQGRRGLPGLSGLDGQPGQ
KGSMGINGKTGSKGGRGLPGLDGRDGLNGEPGTKGRAGTKGEDGIPGSNGFDGQPGRRGQ
KGASGRSNIPGPTGEVGPPGLFGESGPFGPKGMRGNPGPVGFEGKPGPPGEQGLPGLLGE
KGEEGVPGVTGLPGRQGLPGREGSPGFSGRQGAPGIKGLPGLPGESGLDGLPGRQGDVGP
SGSTGQTGPKGEKGENGEPGLVGLSGVKGNQGFPGITGKPGFPGLVGEPGIKGEPGRSIE
PSELVTGPKGNMGVPGLPGPPGLIGRSGLPGLQGFKQNHKFPGRNGNPGRAGEPGPAGRV
RPPGHLIVKHSQTVDVPECPAGMTKLWDGYSLLYLEGSEKAHGQDLGGAGSCMPRFNTMP
FLYCNTQSVCKYGSRNDKSYWLSTTAAIPMMPVNVDMVRKYISRCSVCESSSIAMAVHSQ
DMVIPPCPEGWSGVWLGYSFAMHTAAGAEGGGQSLSSPGSCLQDFRATPFIECNGARGHC
FFYNNQYSFWLTTIPQDYQFG
Nucleotide sequence
Length: 4,252
>Cisavi.CG.ENS81.R30.1983319-1996169.07580.t
GGACCCCCTGGTATTCAAGGCAAAGCAGGTCCTCAGGGACAGCTTGGTTTCCCGGGTCCT
GAAGGTGTTATGGGACCGAAAGGATACGCTGGTCTTGCTGGAAGACCTGGTAAAGCTGGA
GAGAAGGGAGATAGGGGGACAATCGGTGTACCAGGGTATTCAGGTATCAATGGAGTGCCT
GGTCACCCTGGAGAGCCTGGTCCAAGAGGTTTCCCAGGTAAAGATGGTTGCAATGGAACA
GATGGTGACAGTGGTGCAGCTGGTTCACCTGGTTTTAATGGGGGAGATGCTGGACCTAAG
GGCTCAAAGGGAGAGCCAGCTTTTGTAAGTGTGGAAGACATGATTAAAGGAGAAAGGGGT
GAAAGTGGTCGGCTTGGACCTAAAGGACCTTCTGGTACCCCTGGAAGATCTGGTAGCAGA
GGACCTCAAGGCCATAAAGGGATCGGTTACCAGGGCGAAACTGGAGCCAAGGGTGAATCT
GGGCCTCCTGGTTTGCCTGGAAGTCCTGGATTTTTAACTGGTCAGCCAGACAGCCAGTTC
ACACCAATTCCAGGACCACCGGGAAGAAATGGTTCCAAGGGTGCCAAAGGTAGAGAAGGG
GAAAAAGGGGAGAAAGGAGTGCGTGGTTTGGCTGGAGGTCGTGGGCCAACTGGAGCTGCA
GGCGGTGAGCGTGGTATGACAGGGAGGCCTGGCATTGATGGCACGATTGGTATGAAGGGC
GAACGTGGTGATCAAGGCCCAATAGGAGCTCCAGGGTTACCGGGTCTACAGGGACTACAA
GGGCCGATAGGATCACCTGGTGCTCCGGGCGAAGCCGGCGTGCCAGGGCCAACGGGGTCC
AACGGCCAACCTGGTGTTAATGGATTCGATGGTCCTTCCGGGGAAGACGGTCTTGCAGGA
AATCCTGGTCTTCCTGGGAATCCAGGTTTACCTGGTGTTGGAGAAAAGGGAGAGATAGGA
ATTAGAGGTTTAAATGGAAAGAATGGGCAAGATGGCGTCCCTGGTCTTAGTGGGGAACAA
GGTCCAAGAGGACTGCCAGGAGTATCTGGAGAAACCATTCCTGGGGAAAATGGAAGAGAC
GGCCCTCCTGGACAAACTGGGGCCCCAGGGCAGTCTGGGTCCAGAGGTGCACCTGGTGAA
CCTGGTCATATTATCATGCTGGACGGGGACAAGATGGTCGGGCCACAAGGATCACCTGGG
ATCGCTGGTTTGCGAGGAGAAAAGGGCCTTCGAGGTGTAAATGGTGTGGATGGATCTGTT
GGACAGAAAGGAGAAAAAGGAGGGGAATGTGACTGTCAAGATGCAGTTGGAGAGACAGGT
AGTCCTGGTCCACCTGGACAGGATGGTCTGCCTGGTTTATCTGGTCTACCGGGTATCAGT
GGCCAATCTGGTGAGCCTGGTGAGCCAGGAGAACCTGGACCTAATGGACCAAGGGGATTA
GATGGCGAAAAAGGTGAACTTGGTCTGCCTGGTGGACAAGGAGAACCAGGAATCGCTGGA
ATTCCTGGACAAGATGGAAGAAATGGCCGCCGAGGCGCACAAGGAGAAAAGGGAGAAGTT
GGACCACAAGGAATGCCAGGTCTACCTGGTTTGAAAGGATTTGAAGGCCCTAAGGGAAGA
GAGGGAAGATCTGGTCAAGATGCATTTGGGATACCTGGTCCACTTGGTTTTAAGGGAGAA
AAGGGAGATGAAGGATTCCAAGGTCCAAATGGATTCAGAGGACAAAAGGATAAAGGAGAA
AATGGGCAATCAGGTGGACGTGGGTATCCTGGAGCTAAAGGTTCCAAAGGATCACGCGGA
GAGCCAGGGCCAGAAGGCCTTACTGGGGATGATGGAGAAAAGGGAAATGTTGGAGAACCA
GGCTTGCCGGCGTTACCTGGTGCACCAGGTAGAAAGGGTGAAGCAGGTCTTCCTGGTCAA
GTTGGTTTACCTGGAGATCAGGGTGAAAGGGGGCGAACAGGAGAAGTTGGTATGAAAGGA
CCTCAAGGGAAACCTGGATTGTCCATACCAGGGAACCCAGGTCAGAAAGGGGCTAACGGC
AACGATGGCCTACCTGGTGCAACTGGGTCTAAGGGAAGCCAAGGGTTCCCAGGCGACAAA
GGATCAACTGGAATACCTGGTGAAACTGGGCTTCCTGGACCACCTGGTGAAGATGGTTTC
CCTGGAGCTCCAGGGCGACCTGGGGCAAGAGGAAAAAATGGAAGATCCGGGCCAAAGGGC
AACGGTGGCTTAGCTGGCCTACCAGGGGTCTCCAGGTTTGTTTTATTTAATGATTTTGCC
TTGGAAAAGTTAATATATTTTTTGATGCTTTCAGGAAAGCCTGGTGCCACCGATGGGCCA
AAGGGTGAAGGTGGTAAACCTGGAATCAAAGGAATGGTTGGAGATGCAGGTCCTCCAGGT
GATTATGGAAGGAATGGCTTGCCAGGAGTTGAGGGGCAAAAGGGAGTAAAAGGAGCACGG
GGGCAGCTTGGCTTCCCAGGAGTCATCGGAAAACCGGGAATTGCTGGACAACCGGGAAGA
GCTGGCTTACCAGGACCGGTTGGTCTCAAAGGACAGAAAGGCATGGTTGGTGAACGCGGT
CCTGATGGTAGACCTGGTCGTGAAGGTAGGCCCGGTCTAAATGGAGAAAATGGTCCAAAG
GGTTTGCAAGGACGAAGAGGGTTACCTGGTCTTAGTGGATTGGATGGCCAACCCGGTCAA
AAGGGCAGTATGGGCATTAATGGAAAAACAGGTTCCAAAGGGGGCCGTGGTTTGCCAGGT
TTGGATGGTAGAGATGGCTTGAATGGTGAACCAGGCACAAAAGGAAGGGCTGGAACTAAA
GGTGAGGATGGGATCCCTGGTTCAAATGGCTTCGATGGCCAGCCAGGAAGAAGAGGACAA
AAAGGTGCTAGTGGCAGATCCAACATACCTGGACCAACCGGAGAGGTCGGCCCACCTGGT
TTATTTGGTGAGTCAGGACCGTTTGGACCAAAGGGCATGCGTGGAAACCCAGGTCCAGTT
GGATTCGAGGGTAAACCAGGACCTCCTGGAGAGCAAGGTTTGCCAGGATTGCTGGGGGAA
AAGGGAGAAGAAGGTGTTCCAGGAGTTACTGGCCTTCCTGGTCGGCAAGGTTTGCCTGGG
AGAGAGGGCTCACCTGGATTCAGTGGGCGGCAAGGTGCACCTGGAATCAAAGGTTTGCCT
GGATTGCCGGGAGAGAGTGGCCTTGATGGACTTCCTGGCAGACAAGGCGATGTTGGACCA
TCTGGCTCCACTGGACAAACTGGACCTAAAGGTGAAAAGGGAGAGAATGGAGAGCCTGGA
CTTGTTGGTTTGTCTGGAGTGAAAGGAAACCAGGGGTTCCCAGGAATCACTGGTAAACCT
GGATTCCCTGGTTTAGTTGGTGAGCCAGGTATAAAGGGGGAACCAGGCCGATCTATTGAA
CCAAGTGAACTTGTTACTGGACCGAAGGGTAATATGGGGGTACCTGGCTTGCCTGGACCA
CCTGGTTTAATTGGTAGATCTGGCCTTCCGGGTCTACAGGGATTTAAGCAAAATCATAAA
TTTCCAGGTAGAAATGGAAATCCAGGCCGAGCTGGCGAACCTGGACCTGCTGGACGTGTT
CGACCCCCCGGGCATCTTATCGTTAAACACAGTCAAACTGTAGATGTACCAGAATGCCCC
GCCGGTATGACGAAACTTTGGGATGGCTACAGTTTATTGTATCTGGAAGGAAGTGAAAAA
GCTCACGGACAAGATCTAGGGGGTGCAGGGTCTTGCATGCCACGGTTTAACACGATGCCG
TTCCTCTACTGCAACACACAAAGTGTGTGCAAATATGGCAGCAGAAACGACAAGTCTTAC
TGGCTCTCAACCACAGCTGCTATTCCAATGATGCCAGTCAACGTTGACATGGTAAGAAAA
TACATCAGTCGTTGCTCAGTTTGTGAGTCATCTTCCATCGCCATGGCAGTGCACAGTCAA
GATATGGTGATACCACCTTGTCCAGAAGGGTGGAGTGGTGTATGGCTGGGCTACAGTTTT
GCAATGCACACTGCTGCTGGTGCTGAAGGCGGTGGCCAGTCGCTGTCTAGCCCTGGATCT
TGCTTGCAGGATTTCCGCGCGACGCCTTTCATTGAATGCAATGGTGCTCGCGGCCACTGC
TTCTTTTACAACAACCAATACAGTTTCTGGTTAACTACGATCCCACAAGATTATCAATTC
GGAACTCCTCAAATGGAGACTCTAAAGGCAGGAAACTTAAGAACAAGGGTTA
| Pfam |
Collagen (IPR008160) - T[1-56] 5.4E-8 - T[49-105] 2.1E-6 - T[117-170] 5.3E-7 - T[222-271] 3.1E-7 - T[437-491] 2.0E-8 - T[488-546] 4.7E-8 - T[689-746] 3.7E-7 - T[971-1025] 4.6E-9 - T[1029-1080] 4.1E-7 - T[1076-1135] 6.5E-10 |
| Gene3D |
Collagen_IV_NC_sf (IPR036954) - T[1202-1401] 2.1E-97 |
| ProSiteProfiles |
Collagen_IV_NC (IPR001442) - T[1204-1401] 102.524 |
| SMART |
Collagen_IV_NC (IPR001442) - T[1204-1311] 1.2E-57 - T[1312-1401] 2.0E-38 |
| Pfam |
Collagen_IV_NC (IPR001442) - T[1206-1309] 1.2E-35 - T[1314-1396] 1.9E-32 |
| SUPERFAMILY |
CTDL_fold (IPR016187) - T[1206-1312] 5.18E-42 - T[1313-1397] 9.89E-33 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| COOA1_HUMAN | 39.044 % | 293 | 8.77E-81 |
| CO7A1_HUMAN | 35.603 % | 246 | 1.37E-65 |
| CO4A6_HUMAN | 41.697 % | 653 | 0 |