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  1. Transcript 'Cisavi.CG.ENS81.R30....'

Transcript Model

Transcript Id

Cisavi.CG.ENS81.R30.3039111-3052244.16998.t

Possible name(s)

TUBA1A; TUBA3C; TUBA3D

Location

R30 [3,039,242 / 3,051,397]

Sequences

Amino acid sequence

Length: 1,013

>Cisavi.CG.ENS81.R30.3039111-3052244.16998.p
RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH
VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDR
IRKLADQCTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPSPQVSTAV
VEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITAS
LRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQ
MVKCDPRHGKYMACCMLYRGDLSSNMFCVVKIRPSKVGRAIILLFSPGLHFLLRTGYIRN
KHFHQSKLKLKVVKCCVIITLYFTTYQQFCTKVIDTNYLPLFENYPKPIVDEFLSQYGKK
GSFVRIRALLVSPSTFKTCRHRTTLRHSGFVTLISLKRSFKTAMNNFTSICPTSTTYHNK
RNSHLLRSEFRQSWYCAFKFGIRFGAIIDNLSALEISRSLVPAICHVLVCSLAGLDDCYR
LVAGNSRSNIVGLIFLFYLFDFQRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPS
DKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKED
AANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFASLLMERLS
VDYGKKSKLEFAVYPAPQISTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLD
IERPTYTNLNRIIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISA
EKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTK
RTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLM
YAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGVDSVEGEAEEAEDEY

Nucleotide sequence

Length: 3,043

>Cisavi.CG.ENS81.R30.3039111-3052244.16998.t
CGCGAATGTATCTCAATCCACGTTGGCCAAGCCGGAGTTCAGATCGGCAACGCATGCTGG
GAGCTCTACTGTCTCGAGCATGGTATCCAACCTGATGGTCAAATGCCAAGCGACAAAACA
ATTGGGGGAGGTGACGATTCGTTCAACACTTTCTTCAGCGAGACTGGAGCTGGGAAACAT
GTCCCACGAGCCGTTTTCGTCGATCTCGAACCAACTGTTGTTGACGAGGTTCGCACTGGA
ACTTACCGACAGCTTTTCCACCCCGAGCAGTTGATAACTGGAAAGGAAGACGCTGCAAAT
AATTATGCCAGAGGCCATTACACCATTGGCAAAGAAATTGTTGATCTTGTCCTGGACAGA
ATCCGCAAACTTGCTGATCAGTGCACTGGACTTCAAGGTTTCCTGATTTTCCATTCCTTT
GGTGGTGGAACCGGATCCGGATTTGCTTCACTTTTGATGGAACGTTTGTCCGTCGATTAT
GGGAAGAAATCCAAGTTGGAGTTCGCGATCTATCCATCCCCGCAGGTTTCAACTGCTGTG
GTCGAACCCTACAACTCCATCTTGACCACCCATACTACTCTCGAGCACTCCGACTGTGCC
TTCATGGTAGACAACGAAGCCATCTACGACATTTGCCGCCGAAATCTCGACATTGAACGG
CCAACCTATACCAACCTCAATCGTCTTATCGGCCAAATCGTTTCATCGATTACCGCCTCT
CTTCGATTCGATGGTGCTCTTAACGTCGATTTGACAGAGTTCCAGACCAACTTGGTGCCA
TACCCACGTATTCACTTCCCATTGGTCACGTACGCCCCAGTGATATCTGCTGAAAAAGCT
TACCACGAGCAATTGTCGGTTGCCGAGATCACCAACGCGTGTTTCGAACCAGCCAATCAG
ATGGTGAAGTGCGATCCACGTCACGGAAAATACATGGCGTGCTGCATGCTTTACCGTGGT
GATCTAAGCTCTAACATGTTCTGTGTGGTGAAAATTAGACCTTCTAAGGTAGGTCGAGCA
ATTATCCTTTTGTTTTCTCCCGGCCTTCATTTTCTTCTTCGAACTGGGTACATTCGCAAC
AAGCATTTTCACCAGTCAAAGCTTAAATTAAAAGTAGTTAAATGTTGTGTTATTATTACC
TTGTATTTCACAACTTACCAACAATTTTGCACGAAGGTGATCGATACAAATTATCTACCT
TTATTTGAGAATTATCCCAAACCAATTGTGGATGAATTTTTGTCGCAATATGGTAAAAAA
GGATCTTTTGTCCGCATTAGAGCGCTTCTTGTTAGTCCGAGCACTTTCAAAACATGCAGG
CACAGAACAACGTTGAGGCATAGTGGTTTTGTCACCTTGATCTCGTTGAAAAGAAGTTTT
AAGACTGCAATGAATAATTTTACTTCAATATGTCCCACTTCGACGACCTATCATAATAAA
CGCAATTCTCACCTTTTACGAAGCGAATTTAGACAGTCCTGGTATTGTGCTTTTAAGTTT
GGCATTCGTTTTGGCGCCATTATCGATAACTTGAGTGCCCTTGAGATTAGCCGCTCTCTC
GTTCCAGCAATTTGTCACGTTCTCGTATGTTCTTTAGCCGGTCTAGACGACTGCTATCGA
TTGGTCGCTGGAAATTCTAGATCGAATATCGTGGGATTGATTTTTTTATTTTATTTATTC
GACTTTCAGCGCGAATGTATCTCAATCCACGTTGGTCAAGCCGGAGTTCAGATCGGCAAT
GCTTGCTGGGAGCTCTACTGTCTCGAGCATGGTATCCAACCTGATGGTCAAATGCCAAGC
GACAAAACAATTGGGGGAGGTGACGATTCCTTCAACACTTTCTTCAGCGAGACTGGAGCT
GGGAAACATGTCCCTCGAGCCGTTTTCGTCGATCTCGAACCAACTGTTGTTGACGAGGTT
CGCACTGGAACTTACCGACAGCTTTTCCACCCCGAGCAGTTGATAACTGGAAAAGAAGAC
GCTGCAAATAATTATGCCAGAGGCCATTACACCATTGGCAAAGAAATTGTTGATCTTGTC
CTGGACAGAATCCGCAAACTTGCTGATCAGTGCACTGGACTCCAAGGTTTCCTGATTTTC
CACTCCTTTGGTGGTGGAACCGGATCCGGATTTGCTTCACTTTTGATGGAACGTTTATCC
GTCGATTATGGGAAGAAATCCAAGTTGGAGTTTGCTGTTTACCCAGCTCCACAGATTTCA
ACTGCTGTGGTCGAACCCTACAACTCCATCTTGACCACCCACACCACTCTTGAGCACTCC
GACTGTGCTTTCATGGTAGACAACGAAGCCATCTACGACATTTGCCGCCGAAACCTTGAC
ATTGAACGGCCAACTTACACCAACTTGAACAGAATCATCGGCCAAATCGTTTCATCGATT
ACCGCTTCTCTTCGATTCGATGGTGCTCTCAACGTCGATTTGACAGAGTTCCAGACCAAC
TTGGTGCCATACCCACGTATTCACTTCCCATTGGTCACGTACGCCCCAGTGATATCTGCT
GAAAAAGCTTACCACGAGCAATTGTCGGTTGCCGAGATCACCAACGCGTGTTTCGAACCA
GCCAATCAGATGGTGAAGTGCGATCCACGTCACGGAAAATACATGGCTTGCTGCATGCTT
TACCGTGGCGATGTTGTCCCGAAAGATGTCAATGCAGCGATTGCAACGATCAAGACCAAG
CGAACCATTCAATTCGTCGACTGGTGTCCAACTGGGTTCAAGGTTGGTATTAACTACCAA
CCACCAACCGTTGTACCAGGAGGTGACTTGGCGAAAGTACAACGAGCAGTTTGTATGTTG
AGCAACACCACTGCCATCGCTGAGGCATGGGCCCGTCTTGACCACAAGTTCGACTTGATG
TACGCCAAGCGTGCCTTCGTCCACTGGTATGTCGGTGAGGGAATGGAGGAAGGAGAATTC
TCCGAAGCTCGTGAGGATCTCGCTGCTCTCGAGAAAGATTACGAAGAGGTTGGAGTTGAT
TCCGTCGAGGGCGAGGCAGAAGAAGCTGAAGACGAATATTAGT

InterProScan

PANTHER
Tubulin (IPR000217) - T[1-324] 0.0 - T[564-1009] 0.0
SUPERFAMILY
Tubulin/FtsZ_GTPase_sf (IPR036525) - T[1-243] 1.11E-100 - T[564-806] 2.62E-100
Gene3D
Tubulin/FtsZ_GTPase_sf (IPR036525) - T[1-267] 2.0E-131 - T[563-830] 6.0E-131
Pfam
Tubulin_FtsZ_GTPase (IPR003008) - T[2-212] 3.9E-68 - T[565-775] 1.0E-67
SMART
Tubulin_FtsZ_GTPase (IPR003008) - T[48-245] 3.0E-84 - T[611-808] 5.3E-84
ProSitePatterns
Tubulin_CS (IPR017975) - T[141-147] . - T[704-710] .
SMART
Tubulin/FtsZ_2-layer-sand-dom (IPR018316) - T[247-366] 1.0E-14 - T[810-955] 1.2E-60
SUPERFAMILY
Tub_FtsZ_C (IPR008280) - T[248-324] 4.88E-31 - T[808-999] 1.07E-86
Pfam
Tubulin/FtsZ_2-layer-sand-dom (IPR018316) - T[262-324] 5.4E-23 - T[825-953] 5.4E-51
Gene3D
Tubulin/FtsZ_C_sf (IPR037103) - T[268-341] 3.4E-27 - T[831-945] 2.5E-67
PRINTS
Tubulin (IPR000217) - T[572-592] 3.6E-88 - T[615-634] 3.6E-88 - T[657-668] 3.6E-88 - T[670-694] 3.6E-88 - T[696-714] 3.6E-88 - T[715-736] 3.6E-88 - T[740-753] 3.6E-88 - T[754-774] 3.6E-88 - T[942-970] 3.6E-88
PRINTS
Alpha_tubulin (IPR002452) - T[580-595] 6.8E-117 - T[607-620] 6.8E-117 - T[650-663] 6.8E-117 - T[682-690] 6.8E-117 - T[710-722] 6.8E-117 - T[723-734] 6.8E-117 - T[776-788] 6.8E-117 - T[836-851] 6.8E-117 - T[883-904] 6.8E-117 - T[909-922] 6.8E-117 - T[922-941] 6.8E-117 - T[947-963] 6.8E-117 - T[984-1000] 6.8E-117
Gene3D
Tubulin_C (IPR023123) - T[946-1012] 5.9E-34

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
TBA1A_HUMAN 96.667 % 924 0
TBA3C_HUMAN 98.214 % 927 0
TBA3D_HUMAN 98.214 % 927 0





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