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  1. Transcript 'KH2012:KH.L96.46.v1....'
  2. Transcript 'Cisavi.CG.ENS81.R304...'

Transcript Model

Transcript Id

Cisavi.CG.ENS81.R304.57580-64646.03461.t

Possible name(s)

BRIP1; RTEL1; RTEL1-TNFRSF6B

Location

R304 [57,579 / 64,646]

Sequences

Amino acid sequence

Length: 701

>Cisavi.CG.ENS81.R304.57580-64646.03461.p
MPAIEIDGITVDFPFTPYDVQKAYMTKVIQALNNNQNAALESPTGTGKTLCLLCSTLAWR
KSKLSAIKQHHQTPTNSGWFQSDSLGESPAIGVPKIIYASRTHSQISQVVKELKRTEYGK
NITISILGSREQMCVHPEVSKQTSNQTMIHMCRSKVNKHICQFYNNVEDAKKNNLFTTQV
LDIEELVTVGKSRHACPYYSEREVSKQNDCGIIFTPYNYVLDRQSRSANNLEVRGNIVIF
DEAHNLEKLCEESTSFDLTSLDIANCIEEVGDVLDAATKLAESGTVADGHEMGESSSLSE
FKASELALMKSVFIALEKQLDLIELDKSTKTRSENGKFMFDFFSKINLSKQTYQIIESNV
SSVRLDDLCTFYRVHICENPESTKTKDVWKKASNAGSKPNYEPIFIPSLIFLGRTISFWC
FSPGYAMNNLVNCGVRNIILTSGTLSPLESFTSELQIDFPVTLENDHVIDKHQVFVVTLS
KGKMGGSLSSTFKTRQDTNHIEEIGHTVVDLIAASPGGALVFFPSYSAMATYMAVWKDNS
NVMSLMESAKPCSIEPRNKHELKTSIEKYYSDVNSGGGAFLAVCRGKVSEGLDFSDNNGR
TVVIIGIPFPPMMDPKIKLKMAFLDDLKSKGGNKSQVLWGREWYRQQACRAVNQAIGRVI
RHRYDYGAIILCDSRYAGKDQLAELPKWVQPHVIKFDDSLK

Nucleotide sequence

Length: 2,103

>Cisavi.CG.ENS81.R304.57580-64646.03461.t
ATGCCAGCCATAGAAATAGATGGGATCACCGTGGACTTTCCATTTACTCCATACGATGTC
CAGAAGGCGTATATGACAAAAGTGATCCAAGCTTTAAATAATAACCAAAACGCAGCATTA
GAATCGCCCACTGGAACCGGCAAAACACTTTGCTTGCTATGTTCAACCCTAGCTTGGCGG
AAAAGCAAGTTATCTGCAATTAAACAGCATCATCAGACACCAACCAATTCAGGTTGGTTT
CAATCGGATTCACTTGGTGAATCACCTGCAATTGGGGTGCCGAAAATTATCTACGCATCT
CGAACTCATTCGCAAATCTCACAAGTGGTAAAGGAACTGAAACGGACGGAATATGGAAAA
AACATCACTATCAGTATCCTGGGTTCCCGTGAACAAATGTGTGTCCATCCTGAGGTTTCA
AAGCAGACCAGCAACCAAACCATGATTCATATGTGCAGAAGCAAAGTAAATAAGCACATC
TGTCAATTCTACAATAACGTGGAAGACGCCAAAAAGAACAATCTTTTTACCACACAAGTC
CTGGACATTGAAGAGCTTGTGACAGTCGGAAAATCGCGACATGCGTGTCCGTATTACTCA
GAGAGAGAAGTCTCGAAACAGAATGACTGTGGAATTATTTTCACCCCATATAATTATGTG
TTAGACCGACAGTCGCGCAGTGCCAACAACTTGGAAGTCAGAGGAAATATTGTTATTTTT
GATGAAGCACACAACTTGGAGAAACTGTGCGAGGAGTCAACTTCATTTGACCTGACATCA
CTGGACATCGCGAATTGCATTGAAGAGGTTGGAGATGTGCTGGATGCTGCAACGAAGCTG
GCAGAGTCAGGAACGGTGGCGGACGGTCATGAGATGGGAGAATCTTCCTCACTGAGCGAG
TTCAAGGCGTCGGAGTTAGCGTTGATGAAGTCTGTATTCATTGCTCTGGAAAAGCAACTC
GATCTTATTGAATTGGATAAATCGACAAAAACCAGATCGGAAAATGGAAAATTTATGTTT
GATTTTTTTTCCAAAATCAACCTTTCAAAACAGACGTATCAAATAATCGAATCTAATGTG
AGTTCCGTCCGACTGGATGATTTGTGCACGTTTTATCGCGTCCACATTTGTGAAAATCCT
GAATCAACCAAGACCAAGGACGTTTGGAAAAAAGCAAGCAATGCTGGCTCTAAACCAAAT
TATGAGCCAATTTTTATACCAAGCCTAATTTTCTTAGGTCGAACCATATCGTTCTGGTGC
TTTAGTCCCGGGTATGCCATGAACAATCTGGTCAACTGCGGAGTTAGGAATATTATTTTA
ACCAGTGGCACATTGTCGCCTTTGGAATCATTTACTTCTGAACTACAAATAGATTTCCCT
GTCACCTTAGAAAATGACCATGTAATAGACAAGCACCAGGTGTTTGTGGTCACACTGTCC
AAGGGCAAGATGGGGGGTTCGTTAAGCTCAACCTTCAAGACGCGGCAAGACACGAACCAC
ATCGAGGAAATCGGACACACAGTCGTCGACCTGATAGCAGCATCACCGGGTGGAGCTCTT
GTCTTTTTTCCCTCCTACTCAGCAATGGCTACCTATATGGCTGTATGGAAAGATAACAGC
AATGTGATGTCATTGATGGAAAGCGCGAAACCATGCAGCATTGAACCAAGGAATAAACAT
GAACTCAAAACATCCATTGAAAAATATTATTCCGATGTCAATTCTGGTGGAGGAGCGTTT
CTTGCTGTGTGTAGGGGGAAGGTATCTGAGGGTCTCGATTTCTCTGATAACAATGGAAGA
ACAGTGGTCATAATTGGAATCCCCTTTCCTCCTATGATGGATCCGAAGATCAAATTAAAA
ATGGCGTTTCTGGATGACCTCAAGTCCAAAGGAGGAAACAAATCCCAAGTTCTGTGGGGT
CGGGAGTGGTACCGACAACAAGCCTGCCGAGCTGTGAACCAGGCAATCGGCAGGGTTATT
CGGCATAGATATGACTATGGGGCTATTATATTATGTGACAGCAGGTATGCTGGAAAGGAT
CAATTGGCAGAGCTGCCGAAATGGGTCCAACCTCACGTTATTAAGTTTGATGATTCGTTG
AAA

InterProScan

ProSiteProfiles
Helic_SF1/SF2_ATP-bd_DinG/Rad3 (IPR014013) - T[7-305] 29.092
SMART
Helicase-like_DEXD_c2 (IPR006554) - T[9-285] 1.5E-51
TIGRFAM
Rad3/Chl1-like (IPR013020) - T[11-694] 4.8E-140
SMART
Helicase_ATP-bd (IPR014001) - T[13-312] 0.007
SUPERFAMILY
P-loop_NTPase (IPR027417) - T[30-62] 1.81E-13 - T[92-114] 1.81E-13 - T[193-269] 1.81E-13 - T[434-448] 1.81E-13 - T[483-672] 1.81E-13
Pfam
DEAD_2 (IPR010614) - T[98-260] 6.7E-51
Pfam
ATP-dep_Helicase_C (IPR006555) - T[509-691] 2.1E-52
SMART
ATP-dep_Helicase_C (IPR006555) - T[526-678] 3.8E-52

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
DDX12_HUMAN 25.476 % 225 7.63E-63
D11L8_HUMAN 25.622 % 215 1.84E-59
RTEL1_HUMAN 43.065 % 625 0