- Transcript 'Cisavi.CG.ENS81.R304...'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R304.57580-64646.03461.t
Possible name(s)
BRIP1; RTEL1; RTEL1-TNFRSF6B
Gene model
Location
R304 [57,579 / 64,646]
Amino acid sequence
Length: 701
>Cisavi.CG.ENS81.R304.57580-64646.03461.p
MPAIEIDGITVDFPFTPYDVQKAYMTKVIQALNNNQNAALESPTGTGKTLCLLCSTLAWR
KSKLSAIKQHHQTPTNSGWFQSDSLGESPAIGVPKIIYASRTHSQISQVVKELKRTEYGK
NITISILGSREQMCVHPEVSKQTSNQTMIHMCRSKVNKHICQFYNNVEDAKKNNLFTTQV
LDIEELVTVGKSRHACPYYSEREVSKQNDCGIIFTPYNYVLDRQSRSANNLEVRGNIVIF
DEAHNLEKLCEESTSFDLTSLDIANCIEEVGDVLDAATKLAESGTVADGHEMGESSSLSE
FKASELALMKSVFIALEKQLDLIELDKSTKTRSENGKFMFDFFSKINLSKQTYQIIESNV
SSVRLDDLCTFYRVHICENPESTKTKDVWKKASNAGSKPNYEPIFIPSLIFLGRTISFWC
FSPGYAMNNLVNCGVRNIILTSGTLSPLESFTSELQIDFPVTLENDHVIDKHQVFVVTLS
KGKMGGSLSSTFKTRQDTNHIEEIGHTVVDLIAASPGGALVFFPSYSAMATYMAVWKDNS
NVMSLMESAKPCSIEPRNKHELKTSIEKYYSDVNSGGGAFLAVCRGKVSEGLDFSDNNGR
TVVIIGIPFPPMMDPKIKLKMAFLDDLKSKGGNKSQVLWGREWYRQQACRAVNQAIGRVI
RHRYDYGAIILCDSRYAGKDQLAELPKWVQPHVIKFDDSLK
Nucleotide sequence
Length: 2,103
>Cisavi.CG.ENS81.R304.57580-64646.03461.t
ATGCCAGCCATAGAAATAGATGGGATCACCGTGGACTTTCCATTTACTCCATACGATGTC
CAGAAGGCGTATATGACAAAAGTGATCCAAGCTTTAAATAATAACCAAAACGCAGCATTA
GAATCGCCCACTGGAACCGGCAAAACACTTTGCTTGCTATGTTCAACCCTAGCTTGGCGG
AAAAGCAAGTTATCTGCAATTAAACAGCATCATCAGACACCAACCAATTCAGGTTGGTTT
CAATCGGATTCACTTGGTGAATCACCTGCAATTGGGGTGCCGAAAATTATCTACGCATCT
CGAACTCATTCGCAAATCTCACAAGTGGTAAAGGAACTGAAACGGACGGAATATGGAAAA
AACATCACTATCAGTATCCTGGGTTCCCGTGAACAAATGTGTGTCCATCCTGAGGTTTCA
AAGCAGACCAGCAACCAAACCATGATTCATATGTGCAGAAGCAAAGTAAATAAGCACATC
TGTCAATTCTACAATAACGTGGAAGACGCCAAAAAGAACAATCTTTTTACCACACAAGTC
CTGGACATTGAAGAGCTTGTGACAGTCGGAAAATCGCGACATGCGTGTCCGTATTACTCA
GAGAGAGAAGTCTCGAAACAGAATGACTGTGGAATTATTTTCACCCCATATAATTATGTG
TTAGACCGACAGTCGCGCAGTGCCAACAACTTGGAAGTCAGAGGAAATATTGTTATTTTT
GATGAAGCACACAACTTGGAGAAACTGTGCGAGGAGTCAACTTCATTTGACCTGACATCA
CTGGACATCGCGAATTGCATTGAAGAGGTTGGAGATGTGCTGGATGCTGCAACGAAGCTG
GCAGAGTCAGGAACGGTGGCGGACGGTCATGAGATGGGAGAATCTTCCTCACTGAGCGAG
TTCAAGGCGTCGGAGTTAGCGTTGATGAAGTCTGTATTCATTGCTCTGGAAAAGCAACTC
GATCTTATTGAATTGGATAAATCGACAAAAACCAGATCGGAAAATGGAAAATTTATGTTT
GATTTTTTTTCCAAAATCAACCTTTCAAAACAGACGTATCAAATAATCGAATCTAATGTG
AGTTCCGTCCGACTGGATGATTTGTGCACGTTTTATCGCGTCCACATTTGTGAAAATCCT
GAATCAACCAAGACCAAGGACGTTTGGAAAAAAGCAAGCAATGCTGGCTCTAAACCAAAT
TATGAGCCAATTTTTATACCAAGCCTAATTTTCTTAGGTCGAACCATATCGTTCTGGTGC
TTTAGTCCCGGGTATGCCATGAACAATCTGGTCAACTGCGGAGTTAGGAATATTATTTTA
ACCAGTGGCACATTGTCGCCTTTGGAATCATTTACTTCTGAACTACAAATAGATTTCCCT
GTCACCTTAGAAAATGACCATGTAATAGACAAGCACCAGGTGTTTGTGGTCACACTGTCC
AAGGGCAAGATGGGGGGTTCGTTAAGCTCAACCTTCAAGACGCGGCAAGACACGAACCAC
ATCGAGGAAATCGGACACACAGTCGTCGACCTGATAGCAGCATCACCGGGTGGAGCTCTT
GTCTTTTTTCCCTCCTACTCAGCAATGGCTACCTATATGGCTGTATGGAAAGATAACAGC
AATGTGATGTCATTGATGGAAAGCGCGAAACCATGCAGCATTGAACCAAGGAATAAACAT
GAACTCAAAACATCCATTGAAAAATATTATTCCGATGTCAATTCTGGTGGAGGAGCGTTT
CTTGCTGTGTGTAGGGGGAAGGTATCTGAGGGTCTCGATTTCTCTGATAACAATGGAAGA
ACAGTGGTCATAATTGGAATCCCCTTTCCTCCTATGATGGATCCGAAGATCAAATTAAAA
ATGGCGTTTCTGGATGACCTCAAGTCCAAAGGAGGAAACAAATCCCAAGTTCTGTGGGGT
CGGGAGTGGTACCGACAACAAGCCTGCCGAGCTGTGAACCAGGCAATCGGCAGGGTTATT
CGGCATAGATATGACTATGGGGCTATTATATTATGTGACAGCAGGTATGCTGGAAAGGAT
CAATTGGCAGAGCTGCCGAAATGGGTCCAACCTCACGTTATTAAGTTTGATGATTCGTTG
AAA
| ProSiteProfiles |
Helic_SF1/SF2_ATP-bd_DinG/Rad3 (IPR014013) - T[7-305] 29.092 |
| SMART |
Helicase-like_DEXD_c2 (IPR006554) - T[9-285] 1.5E-51 |
| TIGRFAM |
Rad3/Chl1-like (IPR013020) - T[11-694] 4.8E-140 |
| SMART |
Helicase_ATP-bd (IPR014001) - T[13-312] 0.007 |
| SUPERFAMILY |
P-loop_NTPase (IPR027417) - T[30-62] 1.81E-13 - T[92-114] 1.81E-13 - T[193-269] 1.81E-13 - T[434-448] 1.81E-13 - T[483-672] 1.81E-13 |
| Pfam |
DEAD_2 (IPR010614) - T[98-260] 6.7E-51 |
| Pfam |
ATP-dep_Helicase_C (IPR006555) - T[509-691] 2.1E-52 |
| SMART |
ATP-dep_Helicase_C (IPR006555) - T[526-678] 3.8E-52 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| DDX12_HUMAN | 25.476 % | 225 | 7.63E-63 |
| D11L8_HUMAN | 25.622 % | 215 | 1.84E-59 |
| RTEL1_HUMAN | 43.065 % | 625 | 0 |