Aniseed - Transcript Card

Transcript Model

Transcript Id

Cisavi.CG.ENS81.R3.1625858-1632256.11345.t

Possible name(s)

GAPVD1; RABGEF1; RIN3

Gene model

Cisavi.CG.ENS81.R3.1625858-1632256

Location

R3 [1,625,857 / 1,632,256]

Sequences

Amino acid sequence

Length: 535

>Cisavi.CG.ENS81.R3.1625858-1632256.11345.p
MAGYCSKCWRDIYTQQQHKLQQQIDLDHEYAKKLQEEEHRNLHPTETSPQVSALQSSTPK
SSPAQPHSPQTPASTKADATLERSFKPFENKKVHTKGFSGRGFRNFFSPSSEHSTVSPNS
VKHKSTPQRKSNSAMQMSPHQWPNPERQLSFESKRASKDFVDFIVAFQEPAAKDVLKKCH
EFMTKLTSNNESTIDEKSEMVQVFYQSMTDRLLSHPHFKSHAHEEDHDKIMNNVEKFIMT
KIYRDVFCHDQTDDEAEDLKVQTRIRNLHWITAAMLDANIDISKSCVSEWTDKAITAIIE
MDSKRAPQDKLACVSRCSKHIFEAIRRSKDDGSPASADEYLPALIHIVLKANPPLLKSNI
RYITRFSNPIHIMSGEDAYFFTNLCCAVTYIENEETGLNAESLSLTQVEFDAYMRGEMQT
GEKQEENERQLCPGLKLMYKNLNDLASLHERTDKMLEEAMQMRQGIQQHSLHVKTQVEKI
LSQTPSRDPFPNFSQSLTYVNDSTETRRSRSTSALDEDLCGNDLLPPPLVPTVAP

Nucleotide sequence

Length: 1,990

>Cisavi.CG.ENS81.R3.1625858-1632256.11345.t
GTCGCATGTACAAATTTAGGCAATTATGTTAGTATAATTTGCACAATGGAAAAGGATAGA
AAGTTCAGCAATTCCAGACGTGGTATCCATGTGAATGAATCAGAATTGATGTGCAAAAAT
GGTTGCGGTTTTTATGGAAACTCAGAATGGCAGGCTATTGTTCGAAATGCTGGCGGGATA
TTTACACACAGCAGCAGCACAAGTTGCAGCAACAGATCGACCTCGACCATGAATATGCGA
AGAAGCTCCAGGAAGAGGAGCACCGAAACCTTCATCCCACCGAAACTTCCCCCCAAGTTT
CTGCACTCCAGTCTTCAACACCCAAATCTTCTCCAGCTCAACCCCATTCTCCACAAACAC
CCGCGTCCACTAAAGCTGACGCGACGTTGGAAAGATCATTCAAACCATTTGAAAACAAAA
AGGTGCATACAAAGGGATTTAGTGGAAGGGGTTTTCGAAATTTCTTTTCCCCATCTTCTG
AACATTCAACTGTGTCACCCAATAGCGTCAAACACAAGTCAACTCCACAGAGAAAATCGA
ACTCAGCTATGCAAATGAGCCCACACCAATGGCCAAACCCTGAGAGACAGCTGAGTTTTG
AGAGCAAACGCGCTTCGAAGGATTTTGTTGATTTTATTGTCGCATTTCAAGAACCTGCCG
CAAAAGATGTGCTCAAGAAATGCCATGAGTTTATGACCAAGTTGACATCAAATAATGAAA
GTACAATTGACGAGAAATCAGAGATGGTTCAAGTTTTCTACCAAAGTATGACGGATCGCC
TCCTTTCCCACCCTCACTTCAAGAGTCATGCTCATGAAGAGGACCATGATAAGATTATGA
ACAATGTTGAGAAGTTTATCATGACGAAGATCTACAGAGACGTCTTCTGCCACGATCAAA
CTGATGACGAAGCAGAAGATCTTAAAGTCCAGACGAGAATTCGAAATCTGCATTGGATAA
CTGCAGCAATGCTGGACGCTAATATTGACATTTCAAAGTCTTGTGTTTCTGAGTGGACAG
ATAAAGCAATCACAGCTATAATTGAAATGGATTCGAAACGGGCACCTCAAGACAAACTAG
CCTGTGTGTCACGATGCAGTAAACACATCTTTGAGGCAATTCGACGTTCAAAGGATGATG
GGAGTCCAGCAAGTGCCGATGAGTACCTGCCAGCGCTTATTCACATCGTATTAAAAGCCA
ACCCGCCGTTGTTAAAATCCAATATCCGGTACATAACCAGGTTCTCGAATCCGATACATA
TCATGTCAGGGGAGGATGCCTACTTCTTCACTAATCTTTGTTGTGCTGTAACATACATTG
AAAATGAGGAGACTGGTTTAAATGCTGAGAGTCTCTCACTGACGCAAGTTGAGTTCGATG
CTTACATGAGAGGGGAAATGCAAACAGGGGAGAAGCAAGAAGAAAATGAACGCCAGCTGT
GTCCAGGACTTAAGCTAATGTACAAGAACCTCAATGACCTGGCTTCCCTGCATGAGAGAA
CTGATAAAATGCTAGAAGAAGCTATGCAAATGAGGCAAGGCATACAACAACATTCGCTCC
ATGTGAAAACTCAAGTTGAGAAAATCTTGTCTCAAACACCTTCAAGGGACCCTTTTCCAA
ATTTTTCGCAATCTTTAACCTATGTTAATGATTCTACTGAGACTCGCAGGTCGAGGTCTA
CTTCTGCTTTAGATGAAGATCTTTGTGGCAATGATCTACTTCCCCCTCCCTTAGTACCCA
CTGTAGCTCCATGATGAAATTTTATGTGTTTGATGCGATATGGATTTCTGTGATTTTCAT
CTTATGTGCTACATTTATAACTAATAATACTTGTCTGGACCATAAATTGCCAGTTTGCTA
TACCAGAAAATATATTCTCTGCTATAGAATTTGAGCATTGCACATTTAATTCTGCATTTT
TGCGCTGTTCTAATTTCTTCTTGAATATATATATTGCATTACTTGTTCCAATTCAGCCCT
ATCCTTCCTT

InterProScan

SUPERFAMILY	VPS9_dom_sf (IPR037191) - T[157-414] 3.92E-58
Gene3D	VPS9_dom_sf (IPR037191) - T[251-426] 2.6E-56
ProSiteProfiles	VPS9 (IPR003123) - T[255-400] 33.041
SMART	VPS9 (IPR003123) - T[290-412] 3.2E-12
Pfam	VPS9 (IPR003123) - T[293-394] 2.7E-22

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
RABX5_HUMAN	34.687 %	308	1.43E-96