- Transcript 'KH2012:KH.C1.928.v1....' >
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- Transcript 'Cisavi.CG.ENS81.R31....'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R31.713377-716716.03705.t
Possible name(s)
DDX39B
Gene model
Location
R31 [713,376 / 716,716]
Amino acid sequence
Length: 425
>Cisavi.CG.ENS81.R31.713377-716716.03705.p
MATEAEELLDYDEEEHETTQEITTEKKDAKKDVKGTYVSIHSSGFRDFLLKPELLRAIVD
CGFEHPSEVQNECIPQAVLGMDVLCQAKSGMGKTAVFVLATLQQLEPVDGQVSVLVMCHT
RELAFQISKEYERFSKYMPTTKVAVFFGGLPITKDQTTLKNNCPHIVVGTPGRLLALIRS
KSLNLKNVKHFILDECDKMLEQLDMRRDVQEIFRLTPHEKQVMMFSATLSKEIRPVCKKF
MQDPMEVYVDDEAKLTLHGLQQHYVKLKDNEKNRKLFDLLDALEFNQVVIFVKSVQRCMA
LAQLLKEQNFPAIDIHRAMNQEERLSRYQLFKNFDRRILVATNLFGRGMDIERVNIVFNY
DMPEDSDTYLHRVARAGRFGTKGLAITFVSDEGDAKTLNDVQDRFEVNVTELPDEIDISA
YIEGR
Nucleotide sequence
Length: 1,602
>Cisavi.CG.ENS81.R31.713377-716716.03705.t
GTGAAGCTGATAATTGAAAACCGCCATTTTCAACTGTTTGAAGCTGTGACCAGAAGTCCT
TTTTATCTTCATCCATCTGAAAAAACAACTAAAAATGGCAACTGAGGCCGAAGAATTATT
GGACTACGATGAAGAAGAACATGAAACCACCCAAGAAATAACAACAGAGAAAAAAGATGC
AAAAAAGGATGTCAAGGGTACCTATGTGTCGATACACAGCTCTGGTTTTCGTGATTTTCT
ACTAAAGCCAGAGTTGTTAAGGGCGATTGTAGATTGCGGTTTTGAGCATCCCTCTGAAGT
TCAAAATGAGTGTATTCCGCAAGCTGTGCTTGGTATGGATGTTCTATGTCAAGCAAAATC
TGGAATGGGGAAAACAGCTGTGTTCGTTCTTGCCACTTTGCAGCAACTGGAACCAGTGGA
TGGACAGGTTTCGGTTTTGGTAATGTGCCACACGCGGGAACTTGCCTTCCAGATTAGCAA
AGAATATGAACGATTTTCCAAATACATGCCCACCACTAAGGTTGCTGTCTTTTTTGGTGG
CTTGCCAATCACAAAAGATCAAACTACACTGAAAAACAACTGCCCCCACATCGTTGTAGG
AACACCCGGGCGACTGCTTGCACTAATTCGCTCTAAGTCTTTGAACCTGAAAAATGTGAA
GCATTTCATTCTTGACGAATGTGACAAAATGCTTGAACAATTAGATATGCGCCGTGATGT
TCAAGAGATCTTTCGTCTCACTCCCCATGAGAAGCAAGTCATGATGTTCAGTGCAACTCT
CAGCAAAGAAATTCGTCCTGTTTGCAAAAAGTTCATGCAAGATCCGATGGAGGTGTATGT
GGATGATGAAGCAAAACTAACGCTCCATGGCCTTCAACAACATTATGTTAAACTAAAGGA
TAATGAAAAGAATCGAAAGCTATTTGATCTTCTGGATGCGCTAGAGTTCAACCAGGTTGT
TATATTCGTGAAATCAGTCCAGAGGTGTATGGCTTTGGCCCAGCTGTTAAAGGAGCAGAA
TTTTCCAGCCATCGACATCCACCGAGCCATGAACCAAGAGGAAAGACTCAGCAGATATCA
ATTGTTCAAGAACTTTGATCGACGTATACTAGTTGCAACAAATCTCTTTGGTCGTGGTAT
GGATATTGAGCGAGTAAACATCGTGTTCAACTACGATATGCCAGAGGATTCTGATACTTA
CTTGCACAGGGTGGCAAGAGCAGGAAGATTTGGTACCAAAGGGCTTGCTATTACTTTTGT
GTCAGATGAAGGAGATGCCAAAACATTGAACGATGTGCAAGACCGATTTGAAGTCAACGT
CACTGAGCTTCCTGATGAGATTGATATCTCCGCCTATATTGAAGGTCGATAAATGTGGAA
ACTTCAACGCTAACATGCATTGAAAGAAAAAAATACTCAGCGTCGGACGTCAATCGCTAC
AAAAAGATGAACTGTTTTTATAGATTTTCTAAACTAAGGTTTTAGAATCTGTAGTCTGAT
GGTAGCACAAAAAAAGAAAAAAATGTCCTTTTACAATTACATTCATATGTTTCGTTATTT
TTTGCGTAATTTGAAATAAATTTTTGTAAATAGTAGTTCTGT
| ProSiteProfiles |
RNA_helicase_DEAD_Q_motif (IPR014014) - T[43-71] 9.45 |
| SMART |
Helicase_ATP-bd (IPR014001) - T[62-263] 6.2E-52 |
| Pfam |
DEAD/DEAH_box_helicase_dom (IPR011545) - T[68-233] 8.4E-39 |
| ProSiteProfiles |
Helicase_ATP-bd (IPR014001) - T[74-247] 27.63 |
| SUPERFAMILY |
P-loop_NTPase (IPR027417) - T[112-392] 3.07E-63 |
| ProSiteProfiles |
Helicase_C (IPR001650) - T[259-420] 21.334 |
| CDD |
Helicase_C (IPR001650) - T[262-388] 2.33682E-36 |
| Pfam |
Helicase_C (IPR001650) - T[272-380] 3.4E-23 |
| SMART |
Helicase_C (IPR001650) - T[299-380] 1.5E-23 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| IF4A3_HUMAN | 36.438 % | 249 | 6.69E-79 |
| DX39B_HUMAN | 87.53 % | 761 | 0 |
| DX39A_HUMAN | 85.851 % | 745 | 0 |