- Transcript 'KH2012:KH.C12.61.v1....' >
- Transcript 'Cisavi.CG.ENS81.R4.1...'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R4.1135544-1138197.14683.t
Possible name(s)
LHCGR; RXFP1; TSHR
Gene model
Location
R4 [1,135,543 / 1,137,204]
Amino acid sequence
Length: 517
>Cisavi.CG.ENS81.R4.1135544-1138197.14683.p
VSNRKAYQCDGKPECYDLSDECGGVCDTEQEFCRFQKFFLNSSSLVYTCENNYTLTSEDI
CDGKWSPCQPRVSFEESQCDGRHFCNATGLISIDKAFVCNGYFDCNDFSDESFCPNRFNC
TTGTNPSSVPSTFTFDDFSDCADSSDECPPKLDSDMISSRNEMISSVFLRVWLWIMATVA
IFGNGYVIVKTISRKNKLIKSSIVSKMNHFLIFNLAISDFLMGLYLIIIAVYSVLFSGRY
CFEDEKWRTGLTCQYLGILSTIASETSVFILCVLTLLRLHGVFMPLQSQNLKFKYVVIAV
ITAWSSAFALAFLPVYPGFADTVVEGAWLPSKFFNSTIVSLSSVRKFTDQIGVYVPNSTE
LLEGGNASWYSMLTYLSMYSPNNQIKGLYGYYSSSSVCISKLFVTSSTNGWIITITIVSI
NLAVFIFIASSYMAIYRKASSHPQTTVSDRSIKMQKKIIKLIATDFACWVPICMMSLLNF
SQVVSMNGTAYAVSAVVLLPINSVLNPLLYSNAFEKL
Nucleotide sequence
Length: 1,551
>Cisavi.CG.ENS81.R4.1135544-1138197.14683.t
GTTTCCAACCGCAAGGCATACCAATGTGACGGAAAACCAGAATGTTATGACTTAAGTGAC
GAATGTGGTGGAGTTTGTGACACAGAGCAAGAGTTTTGCCGGTTTCAGAAATTCTTTCTA
AATTCGAGTTCATTGGTATATACTTGTGAGAACAATTATACATTAACATCGGAAGATATT
TGTGATGGAAAATGGTCACCCTGTCAACCAAGAGTTTCATTTGAGGAATCACAGTGCGAT
GGACGGCATTTCTGTAATGCTACCGGGTTGATAAGCATCGACAAAGCTTTCGTTTGCAAC
GGATATTTTGATTGCAACGACTTTTCCGATGAGTCATTCTGTCCAAATCGTTTTAACTGC
ACTACTGGTACAAATCCGAGCTCAGTACCATCAACATTTACTTTTGACGATTTCAGCGAC
TGTGCCGATAGTAGTGACGAATGTCCTCCCAAACTTGATTCTGACATGATCTCGTCGAGA
AACGAAATGATCAGCAGTGTTTTTCTTCGTGTATGGCTTTGGATAATGGCAACTGTTGCA
ATTTTTGGAAATGGATATGTTATTGTAAAAACCATTTCAAGAAAAAATAAGCTTATAAAA
TCGTCAATTGTTTCAAAGATGAATCACTTTCTGATTTTTAATCTTGCTATTTCTGATTTT
CTAATGGGTTTATACCTTATTATAATAGCCGTCTATTCAGTGCTATTCTCTGGTCGTTAT
TGCTTTGAGGATGAGAAATGGAGAACAGGGTTAACATGTCAATATTTAGGAATACTTTCC
ACCATCGCCAGCGAAACGTCAGTATTCATCTTATGCGTTTTAACGCTTTTAAGGCTCCAT
GGAGTATTTATGCCACTTCAGTCACAAAATCTAAAATTTAAATATGTGGTGATTGCAGTT
ATAACTGCATGGAGCTCCGCTTTTGCTCTTGCATTTCTTCCAGTTTATCCAGGGTTTGCA
GACACTGTGGTGGAGGGTGCATGGCTACCGAGCAAGTTTTTTAACTCCACAATTGTTTCT
CTTTCCAGTGTGCGAAAATTCACAGATCAGATTGGAGTTTATGTTCCGAATTCGACGGAA
CTTTTAGAAGGTGGAAATGCGTCTTGGTATTCAATGCTTACATATCTCAGCATGTATAGC
CCAAACAATCAAATTAAAGGCCTATACGGCTATTATTCATCTAGTAGTGTTTGCATCTCA
AAATTGTTTGTCACTTCCTCGACAAATGGCTGGATAATAACAATTACAATTGTATCGATA
AATCTTGCTGTATTTATTTTTATTGCCTCGTCCTATATGGCCATATACAGAAAGGCATCT
TCACATCCACAGACTACAGTCAGCGATAGATCAATTAAAATGCAAAAAAAGATTATCAAA
CTAATAGCAACGGACTTCGCATGCTGGGTCCCCATCTGCATGATGTCACTTCTTAATTTT
TCCCAAGTTGTATCAATGAATGGGACTGCATACGCTGTCAGTGCGGTAGTTCTTCTGCCA
ATCAACAGCGTTCTCAACCCACTTTTATATTCAAATGCATTCGAAAAATTG
| PANTHER |
TSHR/LHCGR/FSHR (IPR034298) - T[8-514] 9.3E-97 |
| ProSiteProfiles |
LDrepeatLR_classA_rpt (IPR002172) - T[67-115] 8.6 |
| SMART |
LDrepeatLR_classA_rpt (IPR002172) - T[78-116] 0.0057 |
| SUPERFAMILY |
LDL_receptor-like_sf (IPR036055) - T[81-114] 6.54E-5 |
| CDD |
LDrepeatLR_classA_rpt (IPR002172) - T[93-114] 1.18353E-4 |
| PRINTS |
GPCR_Rhodpsn (IPR000276) - T[168-192] 1.6E-13 - T[208-229] 1.6E-13 - T[260-282] 1.6E-13 - T[454-478] 1.6E-13 - T[492-517] 1.6E-13 |
| ProSiteProfiles |
GPCR_Rhodpsn_7TM (IPR017452) - T[183-510] 24.785 |
| Pfam |
GPCR_Rhodpsn (IPR000276) - T[197-315] 5.0E-11 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| TSHR_HUMAN | 30.387 % | 92.4 | 9.88E-20 |
| LSHR_HUMAN | 29.444 % | 89.7 | 7.4E-19 |
| RXFP1_HUMAN | 26.031 % | 112 | 3.33E-26 |