- Transcript 'KH2012:KH.C4.420.v1....' >
- Transcript 'Cisavi.CG.ENS81.R88....' >
- Transcript 'Cisavi.CG.ENS81.R4.1...'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R4.1135544-1138197.14684.t
Possible name(s)
LHCGR; RXFP1; TSHR
Gene model
Location
R4 [1,136,052 / 1,138,197]
Amino acid sequence
Length: 473
>Cisavi.CG.ENS81.R4.1135544-1138197.14684.p
RPQNYAEEGTVACTRGTYKCENTACIAAENFCNHRDDCGDGSDETNCNVVPTILKIISTQ
CNNGKCINMLFACNRKDDCGDGSDEIRDQPGLKCSFGKRDDIYAGAVSNRKAYQCDGKPE
CYDLSDECGGVCDTEQEFCRFQKFFLNSSSLVYTCENNYTLTSEDICDGKWSPCQPRVSF
EESQCDGRHFCNATGLISIDKAFVCNGYFDCNDFSDESFCPNRFNCTTGTNPSSVPSTFT
FDDFSDCADSSDECPPKLDSDMISSRNEMISSVFLRVWLWIMATVAIFGNGYVIVKTISR
KNKLIKSSIVSKMNHFLIFNLAISDFLMGLYLIIIAVYSVLFSGRYCFEDEKWRTGLTCQ
YLGILSTIASETSVFILCVLTLLRLHGVFMPLQSQNLKFKYVVIAVITAWSSAFALAFLP
VYPGFADTVVEGAWLPSKFFNSTIVSLSSVRKFTDQIGVYVPNSTELLEGGNA
Nucleotide sequence
Length: 1,419
>Cisavi.CG.ENS81.R4.1135544-1138197.14684.t
CGACCACAAAATTATGCAGAAGAAGGCACTGTAGCATGCACACGCGGGACCTACAAGTGC
GAGAATACCGCTTGTATTGCCGCGGAAAATTTTTGCAATCACAGAGATGATTGTGGGGAC
GGAAGTGACGAGACGAACTGCAATGTTGTGCCAACAATATTGAAAATTATCTCCACACAG
TGCAACAACGGCAAATGTATTAACATGTTGTTTGCTTGTAACCGTAAAGACGATTGCGGA
GATGGATCCGATGAGATACGAGACCAACCAGGTCTTAAATGTAGTTTTGGTAAAAGAGAC
GATATCTATGCTGGTGCCGTTTCCAACCGCAAGGCATACCAATGTGACGGAAAACCAGAA
TGTTATGACTTAAGTGACGAATGTGGTGGAGTTTGTGACACAGAGCAAGAGTTTTGCCGG
TTTCAGAAATTCTTTCTAAATTCGAGTTCATTGGTATATACTTGTGAGAACAATTATACA
TTAACATCGGAAGATATTTGTGATGGAAAATGGTCACCCTGTCAACCAAGAGTTTCATTT
GAGGAATCACAGTGCGATGGACGGCATTTCTGTAATGCTACCGGGTTGATAAGCATCGAC
AAAGCTTTCGTTTGCAACGGATATTTTGATTGCAACGACTTTTCCGATGAGTCATTCTGT
CCAAATCGTTTTAACTGCACTACTGGTACAAATCCGAGCTCAGTACCATCAACATTTACT
TTTGACGATTTCAGCGACTGTGCCGATAGTAGTGACGAATGTCCTCCCAAACTTGATTCT
GACATGATCTCGTCGAGAAACGAAATGATCAGCAGTGTTTTTCTTCGTGTATGGCTTTGG
ATAATGGCAACTGTTGCAATTTTTGGAAATGGATATGTTATTGTAAAAACCATTTCAAGA
AAAAATAAGCTTATAAAATCGTCAATTGTTTCAAAGATGAATCACTTTCTGATTTTTAAT
CTTGCTATTTCTGATTTTCTAATGGGTTTATACCTTATTATAATAGCCGTCTATTCAGTG
CTATTCTCTGGTCGTTATTGCTTTGAGGATGAGAAATGGAGAACAGGGTTAACATGTCAA
TATTTAGGAATACTTTCCACCATCGCCAGCGAAACGTCAGTATTCATCTTATGCGTTTTA
ACGCTTTTAAGGCTCCATGGAGTATTTATGCCACTTCAGTCACAAAATCTAAAATTTAAA
TATGTGGTGATTGCAGTTATAACTGCATGGAGCTCCGCTTTTGCTCTTGCATTTCTTCCA
GTTTATCCAGGGTTTGCAGACACTGTGGTGGAGGGTGCATGGCTACCGAGCAAGTTTTTT
AACTCCACAATTGTTTCTCTTTCCAGTGTGCGAAAATTCACAGATCAGATTGGAGTTTAT
GTTCCGAATTCGACGGAACTTTTAGAAGGTGGAAATGCG
| SUPERFAMILY |
LDL_receptor-like_sf (IPR036055) - T[11-49] 2.49E-9 - T[58-86] 1.96E-8 - T[187-220] 5.89E-5 |
| PANTHER |
TSHR/LHCGR/FSHR (IPR034298) - T[12-445] 5.8E-63 |
| Pfam |
LDrepeatLR_classA_rpt (IPR002172) - T[12-47] 2.1E-8 - T[60-85] 4.3E-9 |
| ProSiteProfiles |
LDrepeatLR_classA_rpt (IPR002172) - T[12-48] 12.125 - T[46-95] 10.325 - T[173-221] 8.6 |
| SMART |
LDrepeatLR_classA_rpt (IPR002172) - T[12-49] 2.0E-9 - T[54-91] 6.1E-4 - T[184-222] 0.0057 |
| CDD |
LDrepeatLR_classA_rpt (IPR002172) - T[13-47] 1.21686E-8 - T[60-85] 1.42247E-7 - T[199-220] 0.00190155 |
| PRINTS |
LDrepeatLR_classA_rpt (IPR002172) - T[23-44] 6.8E-21 - T[64-85] 6.8E-21 - T[106-127] 6.8E-21 - T[196-217] 6.8E-21 - T[232-253] 6.8E-21 |
| ProSitePatterns |
LDLR_class-A_CS (IPR023415) - T[25-47] . |
| ProSiteProfiles |
GPCR_Rhodpsn_7TM (IPR017452) - T[289-422] 16.52 |
| Pfam |
GPCR_Rhodpsn (IPR000276) - T[290-421] 4.3E-11 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| LRP1_HUMAN | 30.075 % | 89.7 | 9.27E-19 |
| TSHR_HUMAN | 30.387 % | 91.3 | 2.01E-19 |
| LSHR_HUMAN | 29.444 % | 89.7 | 6.04E-19 |