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  1. Transcript 'Moocul.CG.ELv1_2.S37...'
  2. Clone 'cicl001a07'
  3. Transcript 'Cisavi.CG.ENS81.R4.1...'

Transcript Model

Transcript Id

Cisavi.CG.ENS81.R4.1135544-1138197.14684.t

Possible name(s)

LHCGR; RXFP1; TSHR

Location

R4 [1,136,052 / 1,138,197]

Sequences

Amino acid sequence

Length: 473

>Cisavi.CG.ENS81.R4.1135544-1138197.14684.p
RPQNYAEEGTVACTRGTYKCENTACIAAENFCNHRDDCGDGSDETNCNVVPTILKIISTQ
CNNGKCINMLFACNRKDDCGDGSDEIRDQPGLKCSFGKRDDIYAGAVSNRKAYQCDGKPE
CYDLSDECGGVCDTEQEFCRFQKFFLNSSSLVYTCENNYTLTSEDICDGKWSPCQPRVSF
EESQCDGRHFCNATGLISIDKAFVCNGYFDCNDFSDESFCPNRFNCTTGTNPSSVPSTFT
FDDFSDCADSSDECPPKLDSDMISSRNEMISSVFLRVWLWIMATVAIFGNGYVIVKTISR
KNKLIKSSIVSKMNHFLIFNLAISDFLMGLYLIIIAVYSVLFSGRYCFEDEKWRTGLTCQ
YLGILSTIASETSVFILCVLTLLRLHGVFMPLQSQNLKFKYVVIAVITAWSSAFALAFLP
VYPGFADTVVEGAWLPSKFFNSTIVSLSSVRKFTDQIGVYVPNSTELLEGGNA

Nucleotide sequence

Length: 1,419

>Cisavi.CG.ENS81.R4.1135544-1138197.14684.t
CGACCACAAAATTATGCAGAAGAAGGCACTGTAGCATGCACACGCGGGACCTACAAGTGC
GAGAATACCGCTTGTATTGCCGCGGAAAATTTTTGCAATCACAGAGATGATTGTGGGGAC
GGAAGTGACGAGACGAACTGCAATGTTGTGCCAACAATATTGAAAATTATCTCCACACAG
TGCAACAACGGCAAATGTATTAACATGTTGTTTGCTTGTAACCGTAAAGACGATTGCGGA
GATGGATCCGATGAGATACGAGACCAACCAGGTCTTAAATGTAGTTTTGGTAAAAGAGAC
GATATCTATGCTGGTGCCGTTTCCAACCGCAAGGCATACCAATGTGACGGAAAACCAGAA
TGTTATGACTTAAGTGACGAATGTGGTGGAGTTTGTGACACAGAGCAAGAGTTTTGCCGG
TTTCAGAAATTCTTTCTAAATTCGAGTTCATTGGTATATACTTGTGAGAACAATTATACA
TTAACATCGGAAGATATTTGTGATGGAAAATGGTCACCCTGTCAACCAAGAGTTTCATTT
GAGGAATCACAGTGCGATGGACGGCATTTCTGTAATGCTACCGGGTTGATAAGCATCGAC
AAAGCTTTCGTTTGCAACGGATATTTTGATTGCAACGACTTTTCCGATGAGTCATTCTGT
CCAAATCGTTTTAACTGCACTACTGGTACAAATCCGAGCTCAGTACCATCAACATTTACT
TTTGACGATTTCAGCGACTGTGCCGATAGTAGTGACGAATGTCCTCCCAAACTTGATTCT
GACATGATCTCGTCGAGAAACGAAATGATCAGCAGTGTTTTTCTTCGTGTATGGCTTTGG
ATAATGGCAACTGTTGCAATTTTTGGAAATGGATATGTTATTGTAAAAACCATTTCAAGA
AAAAATAAGCTTATAAAATCGTCAATTGTTTCAAAGATGAATCACTTTCTGATTTTTAAT
CTTGCTATTTCTGATTTTCTAATGGGTTTATACCTTATTATAATAGCCGTCTATTCAGTG
CTATTCTCTGGTCGTTATTGCTTTGAGGATGAGAAATGGAGAACAGGGTTAACATGTCAA
TATTTAGGAATACTTTCCACCATCGCCAGCGAAACGTCAGTATTCATCTTATGCGTTTTA
ACGCTTTTAAGGCTCCATGGAGTATTTATGCCACTTCAGTCACAAAATCTAAAATTTAAA
TATGTGGTGATTGCAGTTATAACTGCATGGAGCTCCGCTTTTGCTCTTGCATTTCTTCCA
GTTTATCCAGGGTTTGCAGACACTGTGGTGGAGGGTGCATGGCTACCGAGCAAGTTTTTT
AACTCCACAATTGTTTCTCTTTCCAGTGTGCGAAAATTCACAGATCAGATTGGAGTTTAT
GTTCCGAATTCGACGGAACTTTTAGAAGGTGGAAATGCG

InterProScan

SUPERFAMILY
LDL_receptor-like_sf (IPR036055) - T[11-49] 2.49E-9 - T[58-86] 1.96E-8 - T[187-220] 5.89E-5
PANTHER
TSHR/LHCGR/FSHR (IPR034298) - T[12-445] 5.8E-63
Pfam
LDrepeatLR_classA_rpt (IPR002172) - T[12-47] 2.1E-8 - T[60-85] 4.3E-9
ProSiteProfiles
LDrepeatLR_classA_rpt (IPR002172) - T[12-48] 12.125 - T[46-95] 10.325 - T[173-221] 8.6
SMART
LDrepeatLR_classA_rpt (IPR002172) - T[12-49] 2.0E-9 - T[54-91] 6.1E-4 - T[184-222] 0.0057
CDD
LDrepeatLR_classA_rpt (IPR002172) - T[13-47] 1.21686E-8 - T[60-85] 1.42247E-7 - T[199-220] 0.00190155
PRINTS
LDrepeatLR_classA_rpt (IPR002172) - T[23-44] 6.8E-21 - T[64-85] 6.8E-21 - T[106-127] 6.8E-21 - T[196-217] 6.8E-21 - T[232-253] 6.8E-21
ProSitePatterns
LDLR_class-A_CS (IPR023415) - T[25-47] .
ProSiteProfiles
GPCR_Rhodpsn_7TM (IPR017452) - T[289-422] 16.52
Pfam
GPCR_Rhodpsn (IPR000276) - T[290-421] 4.3E-11

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
LRP1_HUMAN 30.075 % 89.7 9.27E-19
TSHR_HUMAN 30.387 % 91.3 2.01E-19
LSHR_HUMAN 29.444 % 89.7 6.04E-19