- Transcript 'KH2012:KH.C2.108.v2....' >
- Transcript 'Cisavi.CG.ENS81.R41....' >
- Transcript 'Harore.CG.MTP2014.S1...' >
- Transcript 'Phmamm.CG.MTP2014.S2...' >
- Transcript 'Cisavi.CG.ENS81.R421...'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R421.19437-27496.02807.t
Possible name(s)
PAX2; PAX5; PAX8
Gene model
Location
R421 [19,436 / 27,496]
Amino acid sequence
Length: 1,030
>Cisavi.CG.ENS81.R421.19437-27496.02807.p
MYNGLTLSVGLHPHLNRVPANLESSSLENKGSFYFTLPKTIVEADSNPQENFDFTTDSII
SLGAVEGLTSVIKRRGVSFGGWKLSEDESNVTMVLNWRKNKENETNISKKLLNKDTKTEL
CVEKLSFKPETLNMSGENNIKVVDDATGQIVMESGANSASVPISEEMCIKRSAGDVQAPI
PIKVFKQDSESAAKVPSQGEGFILSVDQSENAAVVDHEREMMELVDAAAHATTFTEEVVV
QEEAKSSDDVENSSSGILGDLSNLGSDSTNGPVQIVVEQGDIKSDYLDQDDYQIDGSSTT
VEPQQTNTATVAAPQGVNPSMMSNLLHTAAAVAASQNAAAATVQVIPGQAAGTIQLVPAS
EVQKTREMMAAGLAPQSINQAGEDTSKTNNQPVFTYLVTSQGTLIAAHASDGSELISSSN
GAKPKRKSGGRGRRLSKNLKSIIPKEEVNDDGHGGGVNQLGGMYVNGRPLPEPIRQRIVN
LSHQGVRPCDISRQLRVSHGCVSKILARYYETGSIRPGVIGGSKPKVATHDVVMRITEYK
RENPTMFAWEIRDRLLADEVCSHETVPSVSSINRIVRSKTAEFMKDNQKLSEQANLPSPL
LGMQMMKSDRKRTNPAPSTSLSATNQQSNGNALQNVDLGAMQIVVSGNEVNPSLAQYVSL
AGSGGNKIEVQPTSSTNDQNRIYSLSNLLGITPSQAALLASNPAAFTQAAAIGATPSTST
PNATDPPKPSPSLPAVLASLPLGQQYELLKTVGGDLVSVQQIDEKNNQDTNPRLISVQTN
KPSNVQVGQQILVNAQGQIVTQPTLPQANQPRVLSPSSAQQGGLYVTSTGQVISSAAAQS
LIISSQQNMEIQPSSNPVNLNQFSGVDVMTSSVVTSSVRSAQTLTSPSNKSSKPNTITLG
ANQQGLVTLTQQQIQQLAAQGVVIQPAPSPVPYQPTIIEQQNEKPDNEVIIEENSADGGE
KPSESDDAIVSEIVEKSPEKVDPMSQSNNEGSMTHDQQQLLKMLQSAILVKQEPSEESSN
INQLIMATQQ
Nucleotide sequence
Length: 3,090
>Cisavi.CG.ENS81.R421.19437-27496.02807.t
ATGTATAATGGTTTAACCCTGTCTGTTGGTCTTCACCCTCACTTGAACCGAGTTCCAGCA
AACCTAGAATCTTCGAGTTTAGAAAACAAGGGATCATTTTACTTCACCCTCCCCAAAACA
ATTGTTGAAGCAGATTCCAATCCTCAGGAAAATTTCGATTTTACTACCGATTCCATTATT
TCATTGGGTGCAGTTGAAGGACTTACAAGTGTGATAAAGCGGCGTGGAGTATCCTTTGGT
GGCTGGAAGTTATCTGAAGATGAGAGTAATGTTACTATGGTCTTAAATTGGAGGAAAAAT
AAGGAAAACGAAACTAACATTTCAAAGAAACTGTTGAATAAAGACACAAAAACTGAACTC
TGTGTAGAAAAGTTGAGTTTTAAACCTGAAACTTTGAATATGTCCGGGGAAAACAACATA
AAAGTTGTTGATGATGCAACTGGTCAGATTGTTATGGAAAGTGGCGCAAACTCTGCGTCT
GTTCCAATAAGTGAGGAAATGTGCATTAAGCGAAGTGCTGGGGATGTCCAAGCACCGATA
CCTATTAAGGTGTTCAAGCAAGACTCTGAATCTGCGGCGAAAGTTCCTTCACAAGGAGAA
GGGTTTATACTTTCAGTCGATCAGAGCGAGAATGCAGCTGTTGTCGACCATGAACGGGAA
ATGATGGAACTTGTGGACGCAGCCGCGCATGCCACCACCTTCACGGAGGAGGTTGTGGTG
CAGGAGGAAGCGAAGTCGAGCGACGACGTGGAGAATTCATCCTCCGGGATACTTGGGGAC
CTCTCCAACCTCGGGAGTGATAGCACCAATGGACCAGTCCAGATTGTTGTGGAACAAGGG
GATATTAAAAGTGACTATCTGGACCAAGATGATTACCAGATCGATGGAAGTTCCACGACG
GTTGAACCACAACAGACGAACACAGCAACAGTGGCTGCCCCACAGGGAGTCAACCCCTCC
ATGATGAGCAACTTGCTCCACACAGCCGCTGCTGTCGCTGCATCTCAGAACGCAGCTGCA
GCCACTGTGCAGGTGATACCTGGGCAGGCAGCGGGTACCATCCAACTCGTGCCGGCATCA
GAGGTGCAGAAGACTCGCGAGATGATGGCGGCCGGACTTGCTCCTCAGAGCATCAACCAA
GCTGGAGAGGATACGTCGAAGACAAACAATCAACCTGTGTTCACATATCTGGTCACCAGT
CAGGGCACTTTGATAGCTGCTCATGCCAGTGATGGGAGTGAGTTGATATCGAGTTCAAAT
GGAGCGAAACCGAAGCGAAAAAGTGGTGGAAGAGGTCGCAGATTGAGTAAAAATTTGAAA
TCGATAATCCCGAAAGAAGAAGTGAATGATGATGGTCACGGAGGGGGTGTGAATCAACTT
GGGGGGATGTACGTCAATGGCCGACCTTTGCCGGAGCCGATACGTCAACGAATCGTCAAC
TTATCGCACCAGGGAGTGAGGCCGTGCGATATCTCACGTCAACTACGCGTTTCCCATGGA
TGCGTGAGCAAAATATTAGCGAGGTACTACGAGACAGGCAGCATCCGGCCTGGAGTGATC
GGGGGAAGCAAACCCAAGGTGGCGACACACGATGTGGTCATGAGGATCACCGAGTACAAA
CGTGAGAATCCGACGATGTTCGCGTGGGAAATCCGCGATCGGCTGCTCGCTGACGAGGTT
TGCTCCCATGAGACCGTGCCCAGCGTGTCTTCCATCAACAGAATTGTGCGAAGTAAAACA
GCCGAGTTCATGAAAGACAACCAGAAGCTTTCAGAGCAAGCAAACCTGCCTTCCCCATTG
CTTGGTATGCAAATGATGAAAAGTGATCGCAAACGCACCAACCCCGCCCCCAGCACCTCA
CTTAGCGCCACCAACCAACAATCGAACGGCAACGCACTCCAAAACGTGGACTTGGGAGCA
ATGCAGATAGTTGTGTCCGGGAATGAAGTCAACCCCTCCCTCGCACAGTATGTCTCACTG
GCTGGTTCAGGGGGGAATAAGATTGAAGTGCAACCAACATCTTCAACCAACGACCAGAAT
CGAATTTACAGCCTCAGCAATCTGCTTGGCATCACACCCAGCCAGGCTGCCCTGCTTGCA
AGCAATCCTGCAGCGTTCACCCAAGCAGCAGCAATCGGGGCGACCCCATCCACATCGACC
CCCAACGCAACCGACCCCCCCAAACCCTCCCCCTCCCTCCCTGCCGTGCTAGCAAGCCTT
CCCCTCGGACAACAGTACGAACTCCTCAAAACTGTCGGGGGAGATTTAGTCTCCGTGCAG
CAAATCGATGAGAAAAACAACCAAGATACCAACCCTCGCTTGATATCGGTGCAAACCAAC
AAGCCTTCCAACGTGCAAGTCGGTCAGCAGATACTCGTCAACGCGCAGGGACAGATAGTC
ACCCAACCAACCTTACCGCAAGCAAACCAGCCACGTGTGTTATCGCCCTCTAGTGCCCAA
CAAGGTGGGCTTTACGTGACGTCGACCGGACAGGTTATCTCCAGCGCGGCTGCTCAGAGT
TTGATCATCTCATCGCAGCAAAACATGGAAATCCAGCCAAGCAGCAACCCGGTCAACCTG
AACCAATTCTCGGGAGTCGATGTTATGACATCATCAGTGGTGACATCATCAGTACGATCG
GCGCAAACGCTTACATCACCGAGCAACAAATCATCGAAGCCCAACACCATAACCCTGGGT
GCAAACCAGCAAGGATTGGTCACGCTGACACAACAGCAAATCCAACAACTAGCGGCGCAA
GGAGTGGTTATCCAACCCGCACCCAGTCCTGTTCCGTACCAACCCACCATTATAGAGCAG
CAGAACGAGAAACCCGATAACGAAGTTATAATCGAGGAAAACTCTGCGGACGGCGGCGAA
AAACCATCGGAAAGCGACGACGCAATCGTGTCGGAAATTGTGGAAAAATCTCCTGAGAAA
GTCGACCCGATGTCGCAAAGTAATAACGAAGGGAGTATGACCCACGACCAACAACAGCTG
CTCAAAATGTTGCAAAGTGCAATCCTGGTGAAACAAGAACCCAGTGAGGAATCCTCCAAC
ATCAACCAACTGATCATGGCCACCCAGCAA
| Gene3D |
WH-like_DNA-bd_sf (IPR036388) - T[445-521] 1.4E-38 - T[522-586] 2.5E-32 |
| SMART |
Paired_dom (IPR001523) - T[453-577] 2.6E-88 |
| ProSiteProfiles |
Paired_dom (IPR001523) - T[453-579] 59.839 |
| CDD |
Paired_dom (IPR001523) - T[455-579] 3.03193E-72 |
| Pfam |
Paired_dom (IPR001523) - T[455-577] 2.2E-67 |
| SUPERFAMILY |
Homeobox-like_sf (IPR009057) - T[456-577] 8.07E-37 |
| PRINTS |
Paired_dom (IPR001523) - T[457-472] 3.5E-39 - T[475-493] 3.5E-39 - T[495-512] 3.5E-39 - T[513-530] 3.5E-39 |
| ProSitePatterns |
Paired_dom (IPR001523) - T[487-503] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PAX5_HUMAN | 75.352 % | 234 | 1.5E-68 |
| PAX2_HUMAN | 81.25 % | 230 | 1.03E-66 |
| PAX8_HUMAN | 82.031 % | 231 | 7.23E-67 |