- Transcript 'Cisavi.CG.ENS81.R4.4...'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R4.413483-414827.09128.t
Possible name(s)
PCDH17; PCDHB13; PCDHB16
Gene model
Location
R4 [413,482 / 414,827]
Amino acid sequence
Length: 144
>Cisavi.CG.ENS81.R4.413483-414827.09128.p
MHLELKLTGKLDYERNSFKRLTLSARDGGSPVRSSHVSVRIRVTDDNDNDPIFEQLEYSV
TLLENLPSGHVVSRVQAHDADSGAAGRIRYAISRRNKATAQNLVNINAITGDVVLKQKLD
RESHNGLRVLIEARDSGPNYQRVG
Nucleotide sequence
Length: 582
>Cisavi.CG.ENS81.R4.413483-414827.09128.t
TAGTGAAAGTGCTTTGATTGGTGATACGATCAGCCTTGACCATTTCTTAGCATCAGACGC
AGATATTGGCAACAATTCTCTGCTGAAATACACCATCAGTCCAAACGCTTTGTTCCAGCT
TGAACAAAATACTGATGAGACAAACACCATGCATTTAGAGCTGAAACTTACCGGAAAACT
TGATTATGAACGAAACTCATTCAAACGTTTGACGCTTTCTGCCCGGGATGGGGGATCTCC
CGTAAGAAGCAGTCACGTGTCAGTCAGGATCAGAGTTACTGATGATAATGACAACGATCC
GATCTTTGAACAACTGGAATATTCCGTAACTTTGCTTGAGAACTTGCCATCCGGTCACGT
GGTTTCTCGTGTGCAAGCTCACGACGCAGATTCTGGCGCAGCTGGGCGTATACGCTACGC
CATCTCGCGGAGAAATAAAGCGACAGCACAAAATCTGGTGAACATAAACGCTATCACCGG
CGATGTGGTACTGAAACAAAAACTGGACAGAGAGTCACACAATGGACTTCGAGTGTTGAT
TGAGGCACGTGACTCGGGTCCAAACTATCAGCGAGTAGGTCG
| SMART |
Cadherin (IPR002126) - T[2-51] 1.4 - T[75-138] 0.01 |
| SUPERFAMILY |
Cadherin-like (IPR015919) - T[5-53] 1.27E-8 - T[47-138] 3.85E-22 |
| PRINTS |
Cadherin (IPR002126) - T[18-30] 5.2E-12 - T[32-51] 5.2E-12 - T[51-64] 5.2E-12 - T[109-135] 5.2E-12 |
| ProSitePatterns |
Cadherin_CS (IPR020894) - T[41-51] . |
| Pfam |
Cadherin (IPR002126) - T[58-139] 4.1E-15 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PCDBG_HUMAN | 43.382 % | 101 | 7.15E-26 |
| PCD17_HUMAN | 40.441 % | 100 | 2.57E-25 |
| PCDBD_HUMAN | 43.382 % | 102 | 2.25E-26 |