- Transcript 'Cisavi.CG.ENS81.R48....'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R48.1003367-1012890.16004.t
Possible name(s)
MTREX; SKIV2L
Gene model
Location
R48 [1,003,366 / 1,012,618]
Amino acid sequence
Length: 1,034
>Cisavi.CG.ENS81.R48.1003367-1012890.16004.p
MAGFSDDIFDVFNEENDEKEKPIKKAISKRPKQSDETENLPEKKKKYDENKITSDDVETL
SELPPPAKDDTEDFSSLIEALPKIETKSMDSIISGCTHEVAFQTGADIPRLLPKAAQPAK
EYKFILDPFQQEALLCLDNNQSVLVSAHTSAGKTVVAEYAIAMSLRDKQRVIYTTPIKAL
SNQKYRDLYEEFSDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAWVIFDEI
HYMRNKERGVVWEETIILLPDNVRYVFLSATIPNARQFASWICHLHKQPCHVVYTDYRPV
PLQHYIFPAGGDGLHLVVDDNGDFREDNFNTAMAVLRDSGDNAKSDFQRRGKQGGQRGKS
GCVQIIELVMERKFLPAIVFSFSKKECEFYANQVLKLKFNSEAERKLVQEVFDNAMDSLS
EEDRRLPQVEACLPFVLNGIGIHHGGLLPIIKETIEILFSEGLIKVLFATETFSMGVNMP
AHTVIFTSIRKFDGKDFRWITGGEYIQMSGRAGRRGMDENGLVIMMVDEKLSPNVGKALV
KGSPDPLDSAFRLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYTAIPEMLANVTKLEKDY
CGMKIKEEEESMTYYRIRQQLNKLATQLEDFVHLPKFCLPFLQPGRLVKVRNGEHDFGWG
VVVNFQKKQPKPSGPMRTDEEPEPQYVVDVLLNCDKEGLNSIAVRLPRPAKDATRSEMAV
VPIMLPLIKALSSVRLFLPKDLRPLDNRQSLLRALEEVNKRFPDGIPILDPIEDMVIKDE
RLKSIVRKTEAFERRMYKHSLHSRSDMAQIYQQCEKKAKLANKVKEAKRALKKARTILQM
DELKCRKRVLRRLGYATMSDVIETKGRVACEISAADELLLTELIFNGVFNNLTPAQCAAL
LCCFIFDEKSKSIPKLSEELASPLRQLHEIARKIAKVSNESKLPLEEEEYVQKFKTMLMD
VVHSWCNGSTFAQISQMTDVFEGSIIRCMRRLEELLREMCHAAKAIGNTHLENKFSEAIQ
LIKRDIIFAASLYL
Nucleotide sequence
Length: 3,111
>Cisavi.CG.ENS81.R48.1003367-1012890.16004.t
TTCGGTATGGCTGGATTTTCCGATGATATATTCGACGTTTTTAACGAGGAAAATGATGAA
AAAGAAAAACCAATAAAAAAGGCTATCAGCAAAAGACCAAAGCAATCTGATGAGACAGAA
AATTTGCCGGAAAAGAAGAAAAAATACGATGAGAACAAAATAACTTCAGACGATGTTGAA
ACCTTGAGTGAACTACCACCACCTGCTAAAGATGACACAGAAGACTTTTCGAGTTTAATA
GAAGCTTTACCAAAAATTGAGACCAAATCAATGGATTCAATCATCTCCGGCTGCACACAT
GAAGTAGCTTTTCAAACTGGTGCAGACATCCCACGATTGCTTCCGAAAGCTGCCCAACCA
GCGAAGGAATACAAGTTCATTCTGGATCCCTTCCAACAGGAAGCCTTGTTGTGTCTAGAT
AACAATCAGTCTGTCCTTGTATCAGCCCACACATCCGCTGGAAAAACGGTAGTGGCAGAA
TATGCCATAGCAATGAGTCTTCGCGACAAACAGCGTGTGATCTACACAACACCAATCAAA
GCGCTCAGTAACCAAAAGTATAGGGACCTCTATGAGGAGTTTTCCGATGTGGGATTAATG
ACGGGTGACGTTACGATAAACCCGACTGCTTCATGTCTAGTTATGACAACAGAGATCTTG
CGTAGTATGTTGTACCGGGGTTCAGAAGTGATGCGTGAGGTCGCATGGGTCATCTTTGAT
GAGATCCATTACATGAGGAACAAAGAGCGCGGGGTGGTGTGGGAGGAAACGATCATCCTG
CTCCCTGACAATGTCCGCTACGTCTTCCTCTCCGCCACCATCCCCAACGCTCGGCAATTT
GCATCCTGGATCTGCCATCTGCACAAGCAGCCGTGCCACGTGGTGTACACTGACTACCGA
CCGGTGCCACTGCAACATTACATCTTCCCTGCTGGTGGAGACGGCCTTCATTTGGTGGTG
GATGATAATGGTGATTTTCGTGAAGATAATTTTAACACAGCGATGGCAGTGCTCAGGGAT
TCAGGGGATAATGCGAAAAGTGATTTCCAACGACGGGGCAAGCAAGGGGGTCAACGTGGC
AAAAGTGGCTGTGTGCAAATCATTGAACTTGTCATGGAGCGGAAGTTTCTACCAGCGATT
GTCTTCTCGTTCAGCAAGAAGGAATGTGAATTCTACGCAAATCAAGTCCTAAAACTCAAG
TTTAACTCAGAGGCCGAGCGGAAATTGGTGCAGGAAGTATTCGACAACGCAATGGATTCT
CTCTCAGAGGAAGACCGACGGCTCCCTCAGGTGGAAGCATGTCTGCCGTTCGTTTTAAAC
GGAATCGGAATTCACCACGGAGGTCTACTGCCCATTATCAAGGAAACAATTGAAATTCTT
TTCTCCGAAGGGTTGATCAAGGTGTTATTTGCAACGGAGACCTTTTCGATGGGTGTGAAC
ATGCCTGCACATACCGTCATATTCACCAGCATTCGTAAATTTGATGGCAAAGATTTTAGA
TGGATTACAGGAGGGGAGTATATACAGATGAGTGGAAGAGCAGGGAGGAGAGGAATGGAT
GAGAACGGCCTTGTCATCATGATGGTCGATGAAAAGTTATCCCCGAATGTTGGCAAAGCT
CTTGTTAAGGGATCACCGGACCCCCTTGACTCAGCGTTCAGACTAACATACAACATGGTG
CTTAACCTACTGCGGGTGGAAGAGATTAACCCAGAGTATATGCTCGAGAAATCCTTCTAC
CAGTTTCAACATTACACTGCCATACCGGAGATGCTTGCAAATGTCACGAAATTGGAGAAA
GATTACTGTGGGATGAAGATAAAGGAAGAAGAAGAATCAATGACTTATTACCGCATCCGG
CAGCAACTCAATAAGCTTGCTACTCAACTCGAGGACTTTGTACATCTTCCCAAGTTCTGC
TTGCCTTTCCTGCAACCTGGCAGGCTAGTAAAGGTGCGAAATGGAGAGCACGATTTTGGA
TGGGGTGTGGTGGTCAACTTTCAGAAGAAACAACCCAAACCAAGTGGCCCCATGCGCACC
GACGAGGAACCAGAGCCGCAATATGTGGTGGATGTGTTGCTCAACTGTGACAAGGAGGGA
TTAAATTCAATTGCCGTCAGGTTGCCACGACCTGCCAAAGATGCCACGCGAAGCGAAATG
GCGGTTGTGCCAATCATGCTGCCACTAATTAAAGCACTGAGCTCGGTCAGGCTGTTCCTT
CCTAAAGATTTAAGGCCGCTTGATAACAGACAGTCCTTGCTGCGTGCGTTGGAGGAAGTT
AACAAGAGGTTTCCGGATGGAATCCCCATTCTGGACCCCATTGAAGATATGGTCATCAAG
GACGAGCGTTTAAAGTCCATCGTCCGGAAGACCGAGGCATTTGAGAGAAGGATGTACAAA
CATTCCTTGCATTCCAGGTCCGACATGGCCCAGATATATCAACAATGCGAGAAAAAGGCA
AAATTGGCGAACAAAGTAAAAGAGGCGAAAAGAGCGTTGAAGAAAGCACGGACGATCTTA
CAAATGGACGAGCTGAAGTGTAGGAAGCGAGTTCTGAGGCGACTTGGGTACGCCACTATG
TCCGACGTCATTGAAACCAAAGGTCGAGTAGCATGCGAGATCAGTGCTGCCGATGAACTT
CTCCTCACAGAGCTCATCTTTAACGGGGTGTTCAACAACCTCACCCCTGCACAGTGCGCC
GCATTGTTGTGTTGTTTTATATTTGATGAGAAGTCGAAAAGCATTCCAAAGTTAAGCGAG
GAACTGGCAAGTCCATTACGACAGTTGCATGAAATAGCAAGAAAAATTGCCAAGGTGTCA
AACGAGTCCAAACTCCCATTGGAAGAAGAGGAATACGTCCAGAAGTTTAAAACGATGCTG
ATGGATGTGGTTCACTCCTGGTGCAACGGATCCACTTTTGCACAAATCTCACAAATGACA
GATGTCTTTGAAGGAAGCATAATAAGGTGCATGAGAAGACTTGAAGAGCTGCTGCGGGAA
ATGTGCCACGCTGCCAAAGCAATCGGGAACACACATCTTGAAAACAAGTTTTCTGAAGCG
ATCCAACTTATAAAAAGAGACATCATTTTCGCTGCTAGCTTGTATTTATAA
| PIRSF |
Ski2-like (IPR016438) - T[5-1034] 0.0 |
| SMART |
Helicase_ATP-bd (IPR014001) - T[122-305] 2.6E-31 |
| Pfam |
DEAD/DEAH_box_helicase_dom (IPR011545) - T[128-273] 3.2E-16 |
| ProSiteProfiles |
Helicase_ATP-bd (IPR014001) - T[134-290] 23.166 |
| SUPERFAMILY |
P-loop_NTPase (IPR027417) - T[137-275] 1.89E-46 - T[340-396] 1.89E-46 - T[436-530] 1.89E-46 |
| ProSiteProfiles |
Helicase_C (IPR001650) - T[361-565] 12.107 |
| CDD |
Helicase_C (IPR001650) - T[364-526] 2.35961E-13 |
| SMART |
Helicase_C (IPR001650) - T[427-516] 6.2E-16 |
| Pfam |
Helicase_C (IPR001650) - T[440-516] 5.7E-7 |
| Pfam |
rRNA_proc-arch_dom (IPR025696) - T[570-833] 1.7E-81 |
| SMART |
Ski2_C (IPR012961) - T[857-1034] 5.3E-95 |
| Pfam |
Ski2_C (IPR012961) - T[860-1029] 1.7E-58 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| MTREX_HUMAN | 69.326 % | 1419 | 0 |
| SKIV2_HUMAN | 37.033 % | 586 | 0 |