- Transcript 'Harore.CG.MTP2014.S1...' >
- Region 'REG00001509' >
- Transcript 'Cisavi.CG.ENS81.R48....'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R48.1003367-1012890.16006.t
Possible name(s)
MTREX; SKIV2L
Gene model
Location
R48 [1,004,624 / 1,012,890]
Amino acid sequence
Length: 959
>Cisavi.CG.ENS81.R48.1003367-1012890.16006.p
SLIEALPKIETKSMDSIISGCTHEVAFQTGADIPRLLPKAAQPAKEYKFILDPFQQEALL
CLDNNQSVLVSAHTSAGKTVVAEYAIAMSLRDKQRVIYTTPIKALSNQKYRDLYEEFSDV
GLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRNKERGVVWEET
IILLPDNVRYVFLSATIPNARQFASWICHLHKQPCHVVYTDYRPVPLQHYIFPAGGDGLH
LVVDDNGDFREDNFNTAMAVLRDSGDNAKSDFQRRGKQGGQRGKSGCVQIIELVMERKFL
PAIVFSFSKKECEFYANQVLKLKFNSEAERKLVQEVFDNAMDSLSEEDRRLPQVEACLPF
VLNGIGIHHGGLLPIIKETIEILFSEGLIKVLFATETFSMGVNMPAHTVIFTSIRKFDGK
DFRWITGGEYIQMSGRAGRRGMDENGLVIMMVDEKLSPNVGKALVKGSPDPLDSAFRLTY
NMVLNLLRVEEINPEYMLEKSFYQFQHYTAIPEMLANVTKLEKDYCGMKIKEEEESMTYY
RIRQQLNKLATQLEDFVHLPKFCLPFLQPGRLVKVRNGEHDFGWGVVVNFQKKQPKPSGP
MRTDEEPEPQYVVDVLLNCDKEGLNSIAVRLPRPAKDATRSEMAVVPIMLPLIKALSSVR
LFLPKDLRPLDNRQSLLRALEEVNKRFPDGIPILDPIEDMVIKDERLKSIVRKTEAFERR
MYKHSLHSRSDMAQIYQQCEKKAKLANKVKEAKRALKKARTILQMDELKCRKRVLRRLGY
ATMSDVIETKGRVACEISAADELLLTELIFNGVFNNLTPAQCAALLCCFIFDEKSKSIPK
LSEELASPLRQLHEIARKIAKVSNESKLPLEEEEYVQKFKTMLMDVVHSWCNGSTFAQIS
QMTDVFEGSIIRCMRRLEELLREMCHAAKAIGNTHLENKFSEAIQLIKRDIIFAASLYL
Nucleotide sequence
Length: 3,117
>Cisavi.CG.ENS81.R48.1003367-1012890.16006.t
AGTTTAATAGAAGCTTTACCAAAAATTGAGACCAAATCAATGGATTCAATCATCTCCGGC
TGCACACATGAAGTAGCTTTTCAAACTGGTGCAGACATCCCACGATTGCTTCCGAAAGCT
GCCCAACCAGCGAAGGAATACAAGTTCATTCTGGATCCCTTCCAACAGGAAGCCTTGTTG
TGTCTAGATAACAATCAGTCTGTCCTTGTATCAGCCCACACATCCGCTGGAAAAACGGTA
GTGGCAGAATATGCCATAGCAATGAGTCTTCGCGACAAACAGCGTGTGATCTACACAACA
CCAATCAAAGCGCTCAGTAACCAAAAGTATAGGGACCTCTATGAGGAGTTTTCCGATGTG
GGATTAATGACGGGTGACGTTACGATAAACCCGACTGCTTCATGTCTAGTTATGACAACA
GAGATCTTGCGTAGTATGTTGTACCGGGGTTCAGAAGTGATGCGTGAGGTCGCATGGGTC
ATCTTTGATGAGATCCATTACATGAGGAACAAAGAGCGCGGGGTGGTGTGGGAGGAAACG
ATCATCCTGCTCCCTGACAATGTCCGCTACGTCTTCCTCTCCGCCACCATCCCCAACGCT
CGGCAATTTGCATCCTGGATCTGCCATCTGCACAAGCAGCCGTGCCACGTGGTGTACACT
GACTACCGACCGGTGCCACTGCAACATTACATCTTCCCTGCTGGTGGAGACGGCCTTCAT
TTGGTGGTGGATGATAATGGTGATTTTCGTGAAGATAATTTTAACACAGCGATGGCAGTG
CTCAGGGATTCAGGGGATAATGCGAAAAGTGATTTCCAACGACGGGGCAAGCAAGGGGGT
CAACGTGGCAAAAGTGGCTGTGTGCAAATCATTGAACTTGTCATGGAGCGGAAGTTTCTA
CCAGCGATTGTCTTCTCGTTCAGCAAGAAGGAATGTGAATTCTACGCAAATCAAGTCCTA
AAACTCAAGTTTAACTCAGAGGCCGAGCGGAAATTGGTGCAGGAAGTATTCGACAACGCA
ATGGATTCTCTCTCAGAGGAAGACCGACGGCTCCCTCAGGTGGAAGCATGTCTGCCGTTC
GTTTTAAACGGAATCGGAATTCACCACGGAGGTCTACTGCCCATTATCAAGGAAACAATT
GAAATTCTTTTCTCCGAAGGGTTGATCAAGGTGTTATTTGCAACGGAGACCTTTTCGATG
GGTGTGAACATGCCTGCACATACCGTCATATTCACCAGCATTCGTAAATTTGATGGCAAA
GATTTTAGATGGATTACAGGAGGGGAGTATATACAGATGAGTGGAAGAGCAGGGAGGAGA
GGAATGGATGAGAACGGCCTTGTCATCATGATGGTCGATGAAAAGTTATCCCCGAATGTT
GGCAAAGCTCTTGTTAAGGGATCACCGGACCCCCTTGACTCAGCGTTCAGACTAACATAC
AACATGGTGCTTAACCTACTGCGGGTGGAAGAGATTAACCCAGAGTATATGCTCGAGAAA
TCCTTCTACCAGTTTCAACATTACACTGCCATACCGGAGATGCTTGCAAATGTCACGAAA
TTGGAGAAAGATTACTGTGGGATGAAGATAAAGGAAGAAGAAGAATCAATGACTTATTAC
CGCATCCGGCAGCAACTCAATAAGCTTGCTACTCAACTCGAGGACTTTGTACATCTTCCC
AAGTTCTGCTTGCCTTTCCTGCAACCTGGCAGGCTAGTAAAGGTGCGAAATGGAGAGCAC
GATTTTGGATGGGGTGTGGTGGTCAACTTTCAGAAGAAACAACCCAAACCAAGTGGCCCC
ATGCGCACCGACGAGGAACCAGAGCCGCAATATGTGGTGGATGTGTTGCTCAACTGTGAC
AAGGAGGGATTAAATTCAATTGCCGTCAGGTTGCCACGACCTGCCAAAGATGCCACGCGA
AGCGAAATGGCGGTTGTGCCAATCATGCTGCCACTAATTAAAGCACTGAGCTCGGTCAGG
CTGTTCCTTCCTAAAGATTTAAGGCCGCTTGATAACAGACAGTCCTTGCTGCGTGCGTTG
GAGGAAGTTAACAAGAGGTTTCCGGATGGAATCCCCATTCTGGACCCCATTGAAGATATG
GTCATCAAGGACGAGCGTTTAAAGTCCATCGTCCGGAAGACCGAGGCATTTGAGAGAAGG
ATGTACAAACATTCCTTGCATTCCAGGTCCGACATGGCCCAGATATATCAACAATGCGAG
AAAAAGGCAAAATTGGCGAACAAAGTAAAAGAGGCGAAAAGAGCGTTGAAGAAAGCACGG
ACGATCTTACAAATGGACGAGCTGAAGTGTAGGAAGCGAGTTCTGAGGCGACTTGGGTAC
GCCACTATGTCCGACGTCATTGAAACCAAAGGTCGAGTAGCATGCGAGATCAGTGCTGCC
GATGAACTTCTCCTCACAGAGCTCATCTTTAACGGGGTGTTCAACAACCTCACCCCTGCA
CAGTGCGCCGCATTGTTGTGTTGTTTTATATTTGATGAGAAGTCGAAAAGCATTCCAAAG
TTAAGCGAGGAACTGGCAAGTCCATTACGACAGTTGCATGAAATAGCAAGAAAAATTGCC
AAGGTGTCAAACGAGTCCAAACTCCCATTGGAAGAAGAGGAATACGTCCAGAAGTTTAAA
ACGATGCTGATGGATGTGGTTCACTCCTGGTGCAACGGATCCACTTTTGCACAAATCTCA
CAAATGACAGATGTCTTTGAAGGAAGCATAATAAGGTGCATGAGAAGACTTGAAGAGCTG
CTGCGGGAAATGTGCCACGCTGCCAAAGCAATCGGGAACACACATCTTGAAAACAAGTTT
TCTGAAGCGATCCAACTTATAAAAAGAGACATCATTTTCGCTGCTAGCTTGTATTTATAA
TAAATCAATAGCGTCAATTTTTTTAATTTTAAGGTGCACAGAAACGGGTAAAATAAAAGG
CAAATGGTTTGCCTACAAATTTAACAACCACTGCCTTCACTACAATGATGTTTTCGCAAC
AATTTTCAATAATGAAGTTGTCATTTGAGTGGTTTGAGGCCCAATTTCGCCCTCAGTTCG
TTCGCTTCCTGGATTTCCAAATCTTCATTATTTTTCGCCTTCTTGCTATGCTTGCTT
| PIRSF |
Ski2-like (IPR016438) - T[8-959] 0.0 |
| SMART |
Helicase_ATP-bd (IPR014001) - T[47-230] 2.6E-31 |
| Pfam |
DEAD/DEAH_box_helicase_dom (IPR011545) - T[53-198] 2.9E-16 |
| ProSiteProfiles |
Helicase_ATP-bd (IPR014001) - T[59-215] 23.166 |
| SUPERFAMILY |
P-loop_NTPase (IPR027417) - T[62-200] 1.54E-46 - T[265-321] 1.54E-46 - T[361-455] 1.54E-46 |
| ProSiteProfiles |
Helicase_C (IPR001650) - T[286-490] 12.107 |
| CDD |
Helicase_C (IPR001650) - T[289-451] 3.42932E-13 |
| SMART |
Helicase_C (IPR001650) - T[352-441] 6.2E-16 |
| Pfam |
Helicase_C (IPR001650) - T[365-441] 5.2E-7 |
| Pfam |
rRNA_proc-arch_dom (IPR025696) - T[495-758] 1.5E-81 |
| SMART |
Ski2_C (IPR012961) - T[782-959] 5.3E-95 |
| Pfam |
Ski2_C (IPR012961) - T[785-954] 1.5E-58 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| MTREX_HUMAN | 69.375 % | 1418 | 0 |
| SKIV2_HUMAN | 37.033 % | 585 | 0 |