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TRANSCRIPT CARD

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  1. Clone 'cien56895'
  2. Region 'REG00000073'
  3. Clone 'citb012o12'
  4. Clone 'cibd069c24'
  5. Transcript 'Cisavi.CG.ENS81.R48....'

Transcript Model

Transcript Id

Cisavi.CG.ENS81.R48.1003367-1012890.16007.t

Possible name(s)

MTREX; SKIV2L

Location

R48 [1,004,624 / 1,012,744]

Sequences

Amino acid sequence

Length: 1,099

>Cisavi.CG.ENS81.R48.1003367-1012890.16007.p
SLIEALPKIETKSMDSIISGCTHEVAFQTGADIPRLLPKAAQPAKEYKFILDPFQQEALL
CLDNNQSVLVSAHTSAGKTVVADYCQCGYLVLVVVGYILWQVIWQNKWNVQQISNNLTLE
YAIAMSLRDKQRVIYTTPIKALSNQKYRDLYEEFSDVGLMTGDVTINPTASCLVMTTEIL
RSMLYRGSEVMREVAWVIFDEIHYMRNKERGVVWEETIILLPDNVRYVFLSATIPNARQF
ASWICHLHKQPCHVVYTDYRPVPLQHYIFPAGGDGLHLVVDDNGDFREDNFNTAMAVLRD
SGDNAKSDFQRRGKQGGQRVSFFMVLPCYLNSENIVNGKSGCVQIIELVMERKFLPAIVF
SFSKKECEFYANQVLKLKFNSEAERKLVQEVFDNAMDSLSEEDRRLPQVEACLPFVLNGI
GIHHGGLLPIIKETIEILFSEGLIKVIFIISEAFLAYVPFVILHLVPNVLFATETFSMGV
NMPAHTVIFTSIRKFDGKDFRWITGGEYIQMSGRAGRRGMDENGLVIMMVDEKLSPNVGK
ALVKGSPDPLDSAFRLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYTAIPEMLANVTKLE
KDYCGMKIKEEEESMTYYRIRQQLNKLATQLEDFVHLPKFCLPFLQPGRLVKVCLPYICS
IGAIITYVRNGEHDFGWGVVVNFQKKQPKPSGPMRTDEEPEPQYVVDVLLNCDKEGLNSI
AVRLPRPAKDATRSEMAVVPIMLPLIKALSSVRLFLPKDLRPLDNRQSLLRALEVRFAFH
SCVQIFYLYQEVNKRFPDGIPILDPIEDMVIKDERLKSIVRKTEAFERRMYKHSLHSRSD
MAQIYQQCEKKAKLANKVKEAKRALKKARTILQMDELKCRKRVLRRLGYATMSDVIETKG
GLHDVVRGSGVGLLFIEVGECIFKLTFLSAGRVACEISAADELLLTELIFNGVFNNLTPA
QCAALLCCFIFDEKSKSIPKLSEELASPLRQLHEIARKIAKVSNESKLPLEEEEYVQKFK
TMLMDVVHSWCNGSTFAQISQMTDVFEGSIIRCMRRLEELLREMCHAAKAIGNTHLENKF
SEAIQLIKRDIIFAASLYL

Nucleotide sequence

Length: 3,426

>Cisavi.CG.ENS81.R48.1003367-1012890.16007.t
AGTTTAATAGAAGCTTTACCAAAAATTGAGACCAAATCAATGGATTCAATCATCTCCGGC
TGCACACATGAAGTAGCTTTTCAAACTGGTGCAGACATCCCACGATTGCTTCCGAAAGCT
GCCCAACCAGCGAAGGAATACAAGTTCATTCTGGATCCCTTCCAACAGGAAGCCTTGTTG
TGTCTAGATAACAATCAGTCTGTCCTTGTATCAGCCCACACATCCGCTGGAAAAACGGTA
GTGGCAGATTACTGTCAATGTGGCTACCTTGTGCTAGTGGTAGTGGGTTATATCCTTTGG
CAAGTCATTTGGCAGAATAAATGGAATGTACAACAAATAAGTAATAACCTAACATTAGAA
TATGCCATAGCAATGAGTCTTCGCGACAAACAGCGTGTGATCTACACAACACCAATCAAA
GCGCTCAGTAACCAAAAGTATAGGGACCTCTATGAGGAGTTTTCCGATGTGGGATTAATG
ACGGGTGACGTTACGATAAACCCGACTGCTTCATGTCTAGTTATGACAACAGAGATCTTG
CGTAGTATGTTGTACCGGGGTTCAGAAGTGATGCGTGAGGTCGCATGGGTCATCTTTGAT
GAGATCCATTACATGAGGAACAAAGAGCGCGGGGTGGTGTGGGAGGAAACGATCATCCTG
CTCCCTGACAATGTCCGCTACGTCTTCCTCTCCGCCACCATCCCCAACGCTCGGCAATTT
GCATCCTGGATCTGCCATCTGCACAAGCAGCCGTGCCACGTGGTGTACACTGACTACCGA
CCGGTGCCACTGCAACATTACATCTTCCCTGCTGGTGGAGACGGCCTTCATTTGGTGGTG
GATGATAATGGTGATTTTCGTGAAGATAATTTTAACACAGCGATGGCAGTGCTCAGGGAT
TCAGGGGATAATGCGAAAAGTGATTTCCAACGACGGGGCAAGCAAGGGGGTCAACGTGTA
AGTTTCTTTATGGTTTTGCCTTGTTACTTGAATTCAGAGAACATAGTAAATGGCAAAAGT
GGCTGTGTGCAAATCATTGAACTTGTCATGGAGCGGAAGTTTCTACCAGCGATTGTCTTC
TCGTTCAGCAAGAAGGAATGTGAATTCTACGCAAATCAAGTCCTAAAACTCAAGTTTAAC
TCAGAGGCCGAGCGGAAATTGGTGCAGGAAGTATTCGACAACGCAATGGATTCTCTCTCA
GAGGAAGACCGACGGCTCCCTCAGGTGGAAGCATGTCTGCCGTTCGTTTTAAACGGAATC
GGAATTCACCACGGAGGTCTACTGCCCATTATCAAGGAAACAATTGAAATTCTTTTCTCC
GAAGGGTTGATCAAGGTAATTTTCATAATCTCAGAAGCATTTCTTGCATATGTACCGTTT
GTAATACTTCACCTGGTCCCAAATGTGTTATTTGCAACGGAGACCTTTTCGATGGGTGTG
AACATGCCTGCACATACCGTCATATTCACCAGCATTCGTAAATTTGATGGCAAAGATTTT
AGATGGATTACAGGAGGGGAGTATATACAGATGAGTGGAAGAGCAGGGAGGAGAGGAATG
GATGAGAACGGCCTTGTCATCATGATGGTCGATGAAAAGTTATCCCCGAATGTTGGCAAA
GCTCTTGTTAAGGGATCACCGGACCCCCTTGACTCAGCGTTCAGACTAACATACAACATG
GTGCTTAACCTACTGCGGGTGGAAGAGATTAACCCAGAGTATATGCTCGAGAAATCCTTC
TACCAGTTTCAACATTACACTGCCATACCGGAGATGCTTGCAAATGTCACGAAATTGGAG
AAAGATTACTGTGGGATGAAGATAAAGGAAGAAGAAGAATCAATGACTTATTACCGCATC
CGGCAGCAACTCAATAAGCTTGCTACTCAACTCGAGGACTTTGTACATCTTCCCAAGTTC
TGCTTGCCTTTCCTGCAACCTGGCAGGCTAGTAAAGGTTTGTCTGCCATATATATGTAGC
ATTGGGGCAATAATTACATATGTGCGAAATGGAGAGCACGATTTTGGATGGGGTGTGGTG
GTCAACTTTCAGAAGAAACAACCCAAACCAAGTGGCCCCATGCGCACCGACGAGGAACCA
GAGCCGCAATATGTGGTGGATGTGTTGCTCAACTGTGACAAGGAGGGATTAAATTCAATT
GCCGTCAGGTTGCCACGACCTGCCAAAGATGCCACGCGAAGCGAAATGGCGGTTGTGCCA
ATCATGCTGCCACTAATTAAAGCACTGAGCTCGGTCAGGCTGTTCCTTCCTAAAGATTTA
AGGCCGCTTGATAACAGACAGTCCTTGCTGCGTGCGTTGGAGGTAAGATTTGCATTTCAC
AGCTGTGTTCAAATTTTTTATCTTTACCAGGAAGTTAACAAGAGGTTTCCGGATGGAATC
CCCATTCTGGACCCCATTGAAGATATGGTCATCAAGGACGAGCGTTTAAAGTCCATCGTC
CGGAAGACCGAGGCATTTGAGAGAAGGATGTACAAACATTCCTTGCATTCCAGGTCCGAC
ATGGCCCAGATATATCAACAATGCGAGAAAAAGGCAAAATTGGCGAACAAAGTAAAAGAG
GCGAAAAGAGCGTTGAAGAAAGCACGGACGATCTTACAAATGGACGAGCTGAAGTGTAGG
AAGCGAGTTCTGAGGCGACTTGGGTACGCCACTATGTCCGACGTCATTGAAACCAAAGGT
GGGTTACATGATGTGGTGAGGGGGAGTGGGGTCGGTCTTTTATTTATTGAGGTTGGCGAG
TGCATTTTTAAATTAACATTTTTGTCCGCAGGTCGAGTAGCATGCGAGATCAGTGCTGCC
GATGAACTTCTCCTCACAGAGCTCATCTTTAACGGGGTGTTCAACAACCTCACCCCTGCA
CAGTGCGCCGCATTGTTGTGTTGTTTTATATTTGATGAGAAGTCGAAAAGCATTCCAAAG
TTAAGCGAGGAACTGGCAAGTCCATTACGACAGTTGCATGAAATAGCAAGAAAAATTGCC
AAGGTGTCAAACGAGTCCAAACTCCCATTGGAAGAAGAGGAATACGTCCAGAAGTTTAAA
ACGATGCTGATGGATGTGGTTCACTCCTGGTGCAACGGATCCACTTTTGCACAAATCTCA
CAAATGACAGATGTCTTTGAAGGAAGCATAATAAGGTGCATGAGAAGACTTGAAGAGCTG
CTGCGGGAAATGTGCCACGCTGCCAAAGCAATCGGGAACACACATCTTGAAAACAAGTTT
TCTGAAGCGATCCAACTTATAAAAAGAGACATCATTTTCGCTGCTAGCTTGTATTTATAA
TAAATCAATAGCGTCAATTTTTTTAATTTTAAGGTGCACAGAAACGGGTAAAATAAAAGG
CAAATGGTTTGCCTACAATTCAATAGGTCAAAGTCCCCATTTGATTTGTTCCAATTTAAC
AACCAC

InterProScan

PIRSF
Ski2-like (IPR016438) - T[8-87] 5.7E-20 - T[117-455] 4.6E-172 - T[464-929] 3.7E-110 - T[922-1099] 3.1E-71
SMART
Helicase_ATP-bd (IPR014001) - T[47-267] 1.8E-23
Pfam
DEAD/DEAH_box_helicase_dom (IPR011545) - T[53-235] 1.0E-12
ProSiteProfiles
Helicase_ATP-bd (IPR014001) - T[59-252] 19.544
SUPERFAMILY
P-loop_NTPase (IPR027417) - T[62-92] 6.05E-38 - T[129-237] 6.05E-38 - T[324-376] 6.05E-38 - T[418-437] 6.05E-38 - T[465-533] 6.05E-38
ProSiteProfiles
Helicase_C (IPR001650) - T[341-568] 9.364
CDD
Helicase_C (IPR001650) - T[344-529] 9.28174E-9
SMART
Helicase_C (IPR001650) - T[407-519] 8.7E-10
Pfam
rRNA_proc-arch_dom (IPR025696) - T[573-867] 5.6E-75
SMART
Ski2_C (IPR012961) - T[922-1099] 7.6E-91
Pfam
Ski2_C (IPR012961) - T[929-1094] 5.1E-57

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
MTREX_HUMAN 60.636 % 1337 0
SKIV2_HUMAN 32.699 % 516 9.95E-164