- Clone 'cima859271' >
- Transcript 'Cisavi.CG.ENS81.R48....'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R48.1003367-1012890.16007.t
Possible name(s)
MTREX; SKIV2L
Gene model
Location
R48 [1,004,624 / 1,012,744]
Amino acid sequence
Length: 1,099
>Cisavi.CG.ENS81.R48.1003367-1012890.16007.p
SLIEALPKIETKSMDSIISGCTHEVAFQTGADIPRLLPKAAQPAKEYKFILDPFQQEALL
CLDNNQSVLVSAHTSAGKTVVADYCQCGYLVLVVVGYILWQVIWQNKWNVQQISNNLTLE
YAIAMSLRDKQRVIYTTPIKALSNQKYRDLYEEFSDVGLMTGDVTINPTASCLVMTTEIL
RSMLYRGSEVMREVAWVIFDEIHYMRNKERGVVWEETIILLPDNVRYVFLSATIPNARQF
ASWICHLHKQPCHVVYTDYRPVPLQHYIFPAGGDGLHLVVDDNGDFREDNFNTAMAVLRD
SGDNAKSDFQRRGKQGGQRVSFFMVLPCYLNSENIVNGKSGCVQIIELVMERKFLPAIVF
SFSKKECEFYANQVLKLKFNSEAERKLVQEVFDNAMDSLSEEDRRLPQVEACLPFVLNGI
GIHHGGLLPIIKETIEILFSEGLIKVIFIISEAFLAYVPFVILHLVPNVLFATETFSMGV
NMPAHTVIFTSIRKFDGKDFRWITGGEYIQMSGRAGRRGMDENGLVIMMVDEKLSPNVGK
ALVKGSPDPLDSAFRLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYTAIPEMLANVTKLE
KDYCGMKIKEEEESMTYYRIRQQLNKLATQLEDFVHLPKFCLPFLQPGRLVKVCLPYICS
IGAIITYVRNGEHDFGWGVVVNFQKKQPKPSGPMRTDEEPEPQYVVDVLLNCDKEGLNSI
AVRLPRPAKDATRSEMAVVPIMLPLIKALSSVRLFLPKDLRPLDNRQSLLRALEVRFAFH
SCVQIFYLYQEVNKRFPDGIPILDPIEDMVIKDERLKSIVRKTEAFERRMYKHSLHSRSD
MAQIYQQCEKKAKLANKVKEAKRALKKARTILQMDELKCRKRVLRRLGYATMSDVIETKG
GLHDVVRGSGVGLLFIEVGECIFKLTFLSAGRVACEISAADELLLTELIFNGVFNNLTPA
QCAALLCCFIFDEKSKSIPKLSEELASPLRQLHEIARKIAKVSNESKLPLEEEEYVQKFK
TMLMDVVHSWCNGSTFAQISQMTDVFEGSIIRCMRRLEELLREMCHAAKAIGNTHLENKF
SEAIQLIKRDIIFAASLYL
Nucleotide sequence
Length: 3,426
>Cisavi.CG.ENS81.R48.1003367-1012890.16007.t
AGTTTAATAGAAGCTTTACCAAAAATTGAGACCAAATCAATGGATTCAATCATCTCCGGC
TGCACACATGAAGTAGCTTTTCAAACTGGTGCAGACATCCCACGATTGCTTCCGAAAGCT
GCCCAACCAGCGAAGGAATACAAGTTCATTCTGGATCCCTTCCAACAGGAAGCCTTGTTG
TGTCTAGATAACAATCAGTCTGTCCTTGTATCAGCCCACACATCCGCTGGAAAAACGGTA
GTGGCAGATTACTGTCAATGTGGCTACCTTGTGCTAGTGGTAGTGGGTTATATCCTTTGG
CAAGTCATTTGGCAGAATAAATGGAATGTACAACAAATAAGTAATAACCTAACATTAGAA
TATGCCATAGCAATGAGTCTTCGCGACAAACAGCGTGTGATCTACACAACACCAATCAAA
GCGCTCAGTAACCAAAAGTATAGGGACCTCTATGAGGAGTTTTCCGATGTGGGATTAATG
ACGGGTGACGTTACGATAAACCCGACTGCTTCATGTCTAGTTATGACAACAGAGATCTTG
CGTAGTATGTTGTACCGGGGTTCAGAAGTGATGCGTGAGGTCGCATGGGTCATCTTTGAT
GAGATCCATTACATGAGGAACAAAGAGCGCGGGGTGGTGTGGGAGGAAACGATCATCCTG
CTCCCTGACAATGTCCGCTACGTCTTCCTCTCCGCCACCATCCCCAACGCTCGGCAATTT
GCATCCTGGATCTGCCATCTGCACAAGCAGCCGTGCCACGTGGTGTACACTGACTACCGA
CCGGTGCCACTGCAACATTACATCTTCCCTGCTGGTGGAGACGGCCTTCATTTGGTGGTG
GATGATAATGGTGATTTTCGTGAAGATAATTTTAACACAGCGATGGCAGTGCTCAGGGAT
TCAGGGGATAATGCGAAAAGTGATTTCCAACGACGGGGCAAGCAAGGGGGTCAACGTGTA
AGTTTCTTTATGGTTTTGCCTTGTTACTTGAATTCAGAGAACATAGTAAATGGCAAAAGT
GGCTGTGTGCAAATCATTGAACTTGTCATGGAGCGGAAGTTTCTACCAGCGATTGTCTTC
TCGTTCAGCAAGAAGGAATGTGAATTCTACGCAAATCAAGTCCTAAAACTCAAGTTTAAC
TCAGAGGCCGAGCGGAAATTGGTGCAGGAAGTATTCGACAACGCAATGGATTCTCTCTCA
GAGGAAGACCGACGGCTCCCTCAGGTGGAAGCATGTCTGCCGTTCGTTTTAAACGGAATC
GGAATTCACCACGGAGGTCTACTGCCCATTATCAAGGAAACAATTGAAATTCTTTTCTCC
GAAGGGTTGATCAAGGTAATTTTCATAATCTCAGAAGCATTTCTTGCATATGTACCGTTT
GTAATACTTCACCTGGTCCCAAATGTGTTATTTGCAACGGAGACCTTTTCGATGGGTGTG
AACATGCCTGCACATACCGTCATATTCACCAGCATTCGTAAATTTGATGGCAAAGATTTT
AGATGGATTACAGGAGGGGAGTATATACAGATGAGTGGAAGAGCAGGGAGGAGAGGAATG
GATGAGAACGGCCTTGTCATCATGATGGTCGATGAAAAGTTATCCCCGAATGTTGGCAAA
GCTCTTGTTAAGGGATCACCGGACCCCCTTGACTCAGCGTTCAGACTAACATACAACATG
GTGCTTAACCTACTGCGGGTGGAAGAGATTAACCCAGAGTATATGCTCGAGAAATCCTTC
TACCAGTTTCAACATTACACTGCCATACCGGAGATGCTTGCAAATGTCACGAAATTGGAG
AAAGATTACTGTGGGATGAAGATAAAGGAAGAAGAAGAATCAATGACTTATTACCGCATC
CGGCAGCAACTCAATAAGCTTGCTACTCAACTCGAGGACTTTGTACATCTTCCCAAGTTC
TGCTTGCCTTTCCTGCAACCTGGCAGGCTAGTAAAGGTTTGTCTGCCATATATATGTAGC
ATTGGGGCAATAATTACATATGTGCGAAATGGAGAGCACGATTTTGGATGGGGTGTGGTG
GTCAACTTTCAGAAGAAACAACCCAAACCAAGTGGCCCCATGCGCACCGACGAGGAACCA
GAGCCGCAATATGTGGTGGATGTGTTGCTCAACTGTGACAAGGAGGGATTAAATTCAATT
GCCGTCAGGTTGCCACGACCTGCCAAAGATGCCACGCGAAGCGAAATGGCGGTTGTGCCA
ATCATGCTGCCACTAATTAAAGCACTGAGCTCGGTCAGGCTGTTCCTTCCTAAAGATTTA
AGGCCGCTTGATAACAGACAGTCCTTGCTGCGTGCGTTGGAGGTAAGATTTGCATTTCAC
AGCTGTGTTCAAATTTTTTATCTTTACCAGGAAGTTAACAAGAGGTTTCCGGATGGAATC
CCCATTCTGGACCCCATTGAAGATATGGTCATCAAGGACGAGCGTTTAAAGTCCATCGTC
CGGAAGACCGAGGCATTTGAGAGAAGGATGTACAAACATTCCTTGCATTCCAGGTCCGAC
ATGGCCCAGATATATCAACAATGCGAGAAAAAGGCAAAATTGGCGAACAAAGTAAAAGAG
GCGAAAAGAGCGTTGAAGAAAGCACGGACGATCTTACAAATGGACGAGCTGAAGTGTAGG
AAGCGAGTTCTGAGGCGACTTGGGTACGCCACTATGTCCGACGTCATTGAAACCAAAGGT
GGGTTACATGATGTGGTGAGGGGGAGTGGGGTCGGTCTTTTATTTATTGAGGTTGGCGAG
TGCATTTTTAAATTAACATTTTTGTCCGCAGGTCGAGTAGCATGCGAGATCAGTGCTGCC
GATGAACTTCTCCTCACAGAGCTCATCTTTAACGGGGTGTTCAACAACCTCACCCCTGCA
CAGTGCGCCGCATTGTTGTGTTGTTTTATATTTGATGAGAAGTCGAAAAGCATTCCAAAG
TTAAGCGAGGAACTGGCAAGTCCATTACGACAGTTGCATGAAATAGCAAGAAAAATTGCC
AAGGTGTCAAACGAGTCCAAACTCCCATTGGAAGAAGAGGAATACGTCCAGAAGTTTAAA
ACGATGCTGATGGATGTGGTTCACTCCTGGTGCAACGGATCCACTTTTGCACAAATCTCA
CAAATGACAGATGTCTTTGAAGGAAGCATAATAAGGTGCATGAGAAGACTTGAAGAGCTG
CTGCGGGAAATGTGCCACGCTGCCAAAGCAATCGGGAACACACATCTTGAAAACAAGTTT
TCTGAAGCGATCCAACTTATAAAAAGAGACATCATTTTCGCTGCTAGCTTGTATTTATAA
TAAATCAATAGCGTCAATTTTTTTAATTTTAAGGTGCACAGAAACGGGTAAAATAAAAGG
CAAATGGTTTGCCTACAATTCAATAGGTCAAAGTCCCCATTTGATTTGTTCCAATTTAAC
AACCAC
| PIRSF |
Ski2-like (IPR016438) - T[8-87] 5.7E-20 - T[117-455] 4.6E-172 - T[464-929] 3.7E-110 - T[922-1099] 3.1E-71 |
| SMART |
Helicase_ATP-bd (IPR014001) - T[47-267] 1.8E-23 |
| Pfam |
DEAD/DEAH_box_helicase_dom (IPR011545) - T[53-235] 1.0E-12 |
| ProSiteProfiles |
Helicase_ATP-bd (IPR014001) - T[59-252] 19.544 |
| SUPERFAMILY |
P-loop_NTPase (IPR027417) - T[62-92] 6.05E-38 - T[129-237] 6.05E-38 - T[324-376] 6.05E-38 - T[418-437] 6.05E-38 - T[465-533] 6.05E-38 |
| ProSiteProfiles |
Helicase_C (IPR001650) - T[341-568] 9.364 |
| CDD |
Helicase_C (IPR001650) - T[344-529] 9.28174E-9 |
| SMART |
Helicase_C (IPR001650) - T[407-519] 8.7E-10 |
| Pfam |
rRNA_proc-arch_dom (IPR025696) - T[573-867] 5.6E-75 |
| SMART |
Ski2_C (IPR012961) - T[922-1099] 7.6E-91 |
| Pfam |
Ski2_C (IPR012961) - T[929-1094] 5.1E-57 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| MTREX_HUMAN | 60.636 % | 1337 | 0 |
| SKIV2_HUMAN | 32.699 % | 516 | 9.95E-164 |