- Transcript 'Haaura.CG.MTP2014.S4...' >
- Transcript 'KH2012:KH.C1.83.v1.A...' >
- Transcript 'Boleac.CG.SB_v3.S472...' >
- Clone 'AHC0AAA9YI03' >
- Transcript 'Cisavi.CG.ENS81.R48....'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R48.1003367-1012890.16009.t
Possible name(s)
MTREX; SKIV2L
Gene model
Location
R48 [1,004,654 / 1,012,885]
Amino acid sequence
Length: 962
>Cisavi.CG.ENS81.R48.1003367-1012890.16009.p
TKSMDSIISGCTHEVAFQTGADIPRLLPKAAQPAKEYKFILDPFQQEALLCLDNNQSVLV
SAHTSAGKTVVAEYAIAMSLRDKQRVIYTTPIKALSNQKYRDLYEEFSDVGLMTGDVTIN
PTASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRNKERGVVWEETIILLPDNVRY
VFLSATIPNARQFASWICHLHKQPCHVVYTDYRPVPLQHYIFPAGGDGLHLVVDDNGDFR
EDNFNTAMAVLRDSGDNAKSDFQRRGKQGGQRGKSGCVQIIELVMERKFLPAIVFSFSKK
ECEFYANQVLKLKFNSEAERKLVQEVFDNAMDSLSEEDRRLPQVEACLPFVLNGIGIHHG
GLLPIIKETIEILFSEGLIKVLFATETFSMGVNMPAHTVIFTSIRKFDGKDFRWITGGEY
IQMSGRAGRRGMDENGLVIMMVDEKLSPNVGKALVKGSPDPLDSAFRLTYNMVLNLLRVE
EINPEYMLEKSFYQFQHYTAIPEMLANVTKLEKDYCGMKIKEEEESMTYYRIRQQLNKLA
TQLEDFVHLPKFCLPFLQPGRLVKVWCSSLFDSIHYQFFLLEHDFGWGVVVNFQKKQPKP
SGPMRTDEEPEPQYVVDVLLNCDKEGLNSIAVRLPRPAKDATRSEMAVVPIMLPLIKALS
SVRLFLPKDLRPLDNRQSLLRALEEVNKRFPDGIPILDPIEDMVIKDERLKSIVRKTEAF
ERRMYKHSLHSRSDMAQIYQQCEKKAKLANKVKEAKRALKKARTILQMDELKCRKRVLRR
LGYATMSDVIETKGRVACEISAADELLLTELIFNGVFNNLTPAQCAALLCCFIFDEKSKS
IPKLSEELASPLRQLHEIARKIAKVSNESKLPLEEEEYVQKFKTMLMDVVHSWCNGSTFA
QISQMTDVFEGSIIRCMRRLEELLREMCHAAKAIGNTHLENKFSEAIQLIKRDIIFAASL
YL
Nucleotide sequence
Length: 3,156
>Cisavi.CG.ENS81.R48.1003367-1012890.16009.t
ACCAAATCAATGGATTCAATCATCTCCGGCTGCACACATGAAGTAGCTTTTCAAACTGGT
GCAGACATCCCACGATTGCTTCCGAAAGCTGCCCAACCAGCGAAGGAATACAAGTTCATT
CTGGATCCCTTCCAACAGGAAGCCTTGTTGTGTCTAGATAACAATCAGTCTGTCCTTGTA
TCAGCCCACACATCCGCTGGAAAAACGGTAGTGGCAGAATATGCCATAGCAATGAGTCTT
CGCGACAAACAGCGTGTGATCTACACAACACCAATCAAAGCGCTCAGTAACCAAAAGTAT
AGGGACCTCTATGAGGAGTTTTCCGATGTGGGATTAATGACGGGTGACGTTACGATAAAC
CCGACTGCTTCATGTCTAGTTATGACAACAGAGATCTTGCGTAGTATGTTGTACCGGGGT
TCAGAAGTGATGCGTGAGGTCGCATGGGTCATCTTTGATGAGATCCATTACATGAGGAAC
AAAGAGCGCGGGGTGGTGTGGGAGGAAACGATCATCCTGCTCCCTGACAATGTCCGCTAC
GTCTTCCTCTCCGCCACCATCCCCAACGCTCGGCAATTTGCATCCTGGATCTGCCATCTG
CACAAGCAGCCGTGCCACGTGGTGTACACTGACTACCGACCGGTGCCACTGCAACATTAC
ATCTTCCCTGCTGGTGGAGACGGCCTTCATTTGGTGGTGGATGATAATGGTGATTTTCGT
GAAGATAATTTTAACACAGCGATGGCAGTGCTCAGGGATTCAGGGGATAATGCGAAAAGT
GATTTCCAACGACGGGGCAAGCAAGGGGGTCAACGTGGCAAAAGTGGCTGTGTGCAAATC
ATTGAACTTGTCATGGAGCGGAAGTTTCTACCAGCGATTGTCTTCTCGTTCAGCAAGAAG
GAATGTGAATTCTACGCAAATCAAGTCCTAAAACTCAAGTTTAACTCAGAGGCCGAGCGG
AAATTGGTGCAGGAAGTATTCGACAACGCAATGGATTCTCTCTCAGAGGAAGACCGACGG
CTCCCTCAGGTGGAAGCATGTCTGCCGTTCGTTTTAAACGGAATCGGAATTCACCACGGA
GGTCTACTGCCCATTATCAAGGAAACAATTGAAATTCTTTTCTCCGAAGGGTTGATCAAG
GTGTTATTTGCAACGGAGACCTTTTCGATGGGTGTGAACATGCCTGCACATACCGTCATA
TTCACCAGCATTCGTAAATTTGATGGCAAAGATTTTAGATGGATTACAGGAGGGGAGTAT
ATACAGATGAGTGGAAGAGCAGGGAGGAGAGGAATGGATGAGAACGGCCTTGTCATCATG
ATGGTCGATGAAAAGTTATCCCCGAATGTTGGCAAAGCTCTTGTTAAGGGATCACCGGAC
CCCCTTGACTCAGCGTTCAGACTAACATACAACATGGTGCTTAACCTACTGCGGGTGGAA
GAGATTAACCCAGAGTATATGCTCGAGAAATCCTTCTACCAGTTTCAACATTACACTGCC
ATACCGGAGATGCTTGCAAATGTCACGAAATTGGAGAAAGATTACTGTGGGATGAAGATA
AAGGAAGAAGAAGAATCAATGACTTATTACCGCATCCGGCAGCAACTCAATAAGCTTGCT
ACTCAACTCGAGGACTTTGTACATCTTCCCAAGTTCTGCTTGCCTTTCCTGCAACCTGGC
AGGCTAGTAAAGGTTTGGTGTAGTAGTCTATTTGACAGTATACATTACCAGTTTTTTTTA
CTAGAGCACGATTTTGGATGGGGTGTGGTGGTCAACTTTCAGAAGAAACAACCCAAACCA
AGTGGCCCCATGCGCACCGACGAGGAACCAGAGCCGCAATATGTGGTGGATGTGTTGCTC
AACTGTGACAAGGAGGGATTAAATTCAATTGCCGTCAGGTTGCCACGACCTGCCAAAGAT
GCCACGCGAAGCGAAATGGCGGTTGTGCCAATCATGCTGCCACTAATTAAAGCACTGAGC
TCGGTCAGGCTGTTCCTTCCTAAAGATTTAAGGCCGCTTGATAACAGACAGTCCTTGCTG
CGTGCGTTGGAGGAAGTTAACAAGAGGTTTCCGGATGGAATCCCCATTCTGGACCCCATT
GAAGATATGGTCATCAAGGACGAGCGTTTAAAGTCCATCGTCCGGAAGACCGAGGCATTT
GAGAGAAGGATGTACAAACATTCCTTGCATTCCAGGTCCGACATGGCCCAGATATATCAA
CAATGCGAGAAAAAGGCAAAATTGGCGAACAAAGTAAAAGAGGCGAAAAGAGCGTTGAAG
AAAGCACGGACGATCTTACAAATGGACGAGCTGAAGTGTAGGAAGCGAGTTCTGAGGCGA
CTTGGGTACGCCACTATGTCCGACGTCATTGAAACCAAAGGTCGAGTAGCATGCGAGATC
AGTGCTGCCGATGAACTTCTCCTCACAGAGCTCATCTTTAACGGGGTGTTCAACAACCTC
ACCCCTGCACAGTGCGCCGCATTGTTGTGTTGTTTTATATTTGATGAGAAGTCGAAAAGC
ATTCCAAAGTTAAGCGAGGAACTGGCAAGTCCATTACGACAGTTGCATGAAATAGCAAGA
AAAATTGCCAAGGTGTCAAACGAGTCCAAACTCCCATTGGAAGAAGAGGAATACGTCCAG
AAGTTTAAAACGATGCTGATGGATGTGGTTCACTCCTGGTGCAACGGATCCACTTTTGCA
CAAATCTCACAAATGACAGATGTCTTTGAAGGAAGCATAATAAGGTGCATGAGAAGACTT
GAAGAGCTGCTGCGGGAAATGTGCCACGCTGCCAAAGCAATCGGGAACACACATCTTGAA
AACAAGTTTTCTGAAGCGATCCAACTTATAAAAAGAGACATCATTTTCGCTGCTAGCTTG
TATTTATAATAAATCAATAGCGTCAATTTTTTTAATTTTAAGGTGCACAGAAACGGGTAA
AATAAAAGGCAAATGGTTTGCCTACAATTCAATAGGTCAAAGTCCCCATTTGATTTGTTC
CAATTTAACAACCACTGCCTTCACTACAATGATGTTTTCGCAACAATTTTCAATAATGAA
GTTGTCATTTGAGTGGTTTGAGGCCCAATTTCGCCCTCAGTTCGTTCGCTTCCTGGATTT
CCAAATCTTCATTATTTTTCGCCTTCTTGCTATGCT
| PIRSF |
Ski2-like (IPR016438) - T[9-962] 0.0 |
| SMART |
Helicase_ATP-bd (IPR014001) - T[37-220] 2.6E-31 |
| Pfam |
DEAD/DEAH_box_helicase_dom (IPR011545) - T[43-188] 2.9E-16 |
| ProSiteProfiles |
Helicase_ATP-bd (IPR014001) - T[49-205] 23.166 |
| SUPERFAMILY |
P-loop_NTPase (IPR027417) - T[52-190] 1.59E-46 - T[255-311] 1.59E-46 - T[351-445] 1.59E-46 |
| ProSiteProfiles |
Helicase_C (IPR001650) - T[276-480] 12.107 |
| CDD |
Helicase_C (IPR001650) - T[279-441] 2.89057E-13 |
| SMART |
Helicase_C (IPR001650) - T[342-431] 6.2E-16 |
| Pfam |
Helicase_C (IPR001650) - T[355-431] 5.2E-7 |
| Pfam |
rRNA_proc-arch_dom (IPR025696) - T[485-761] 5.8E-79 |
| SMART |
Ski2_C (IPR012961) - T[785-962] 5.3E-95 |
| Pfam |
Ski2_C (IPR012961) - T[788-957] 1.5E-58 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| MTREX_HUMAN | 69.142 % | 1397 | 0 |
| SKIV2_HUMAN | 36.438 % | 570 | 0 |