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TRANSCRIPT CARD

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  1. Clone 'cslv007c11'
  2. Transcript 'Boleac.CG.SB_v3.S472...'
  3. Transcript 'KH2012:KH.C7.159.v1....'
  4. Clone 'AHC0AAA9YI03'
  5. Transcript 'Cisavi.CG.ENS81.R48....'

Transcript Model

Transcript Id

Cisavi.CG.ENS81.R48.1003367-1012890.16009.t

Possible name(s)

MTREX; SKIV2L

Location

R48 [1,004,654 / 1,012,885]

Sequences

Amino acid sequence

Length: 962

>Cisavi.CG.ENS81.R48.1003367-1012890.16009.p
TKSMDSIISGCTHEVAFQTGADIPRLLPKAAQPAKEYKFILDPFQQEALLCLDNNQSVLV
SAHTSAGKTVVAEYAIAMSLRDKQRVIYTTPIKALSNQKYRDLYEEFSDVGLMTGDVTIN
PTASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRNKERGVVWEETIILLPDNVRY
VFLSATIPNARQFASWICHLHKQPCHVVYTDYRPVPLQHYIFPAGGDGLHLVVDDNGDFR
EDNFNTAMAVLRDSGDNAKSDFQRRGKQGGQRGKSGCVQIIELVMERKFLPAIVFSFSKK
ECEFYANQVLKLKFNSEAERKLVQEVFDNAMDSLSEEDRRLPQVEACLPFVLNGIGIHHG
GLLPIIKETIEILFSEGLIKVLFATETFSMGVNMPAHTVIFTSIRKFDGKDFRWITGGEY
IQMSGRAGRRGMDENGLVIMMVDEKLSPNVGKALVKGSPDPLDSAFRLTYNMVLNLLRVE
EINPEYMLEKSFYQFQHYTAIPEMLANVTKLEKDYCGMKIKEEEESMTYYRIRQQLNKLA
TQLEDFVHLPKFCLPFLQPGRLVKVWCSSLFDSIHYQFFLLEHDFGWGVVVNFQKKQPKP
SGPMRTDEEPEPQYVVDVLLNCDKEGLNSIAVRLPRPAKDATRSEMAVVPIMLPLIKALS
SVRLFLPKDLRPLDNRQSLLRALEEVNKRFPDGIPILDPIEDMVIKDERLKSIVRKTEAF
ERRMYKHSLHSRSDMAQIYQQCEKKAKLANKVKEAKRALKKARTILQMDELKCRKRVLRR
LGYATMSDVIETKGRVACEISAADELLLTELIFNGVFNNLTPAQCAALLCCFIFDEKSKS
IPKLSEELASPLRQLHEIARKIAKVSNESKLPLEEEEYVQKFKTMLMDVVHSWCNGSTFA
QISQMTDVFEGSIIRCMRRLEELLREMCHAAKAIGNTHLENKFSEAIQLIKRDIIFAASL
YL

Nucleotide sequence

Length: 3,156

>Cisavi.CG.ENS81.R48.1003367-1012890.16009.t
ACCAAATCAATGGATTCAATCATCTCCGGCTGCACACATGAAGTAGCTTTTCAAACTGGT
GCAGACATCCCACGATTGCTTCCGAAAGCTGCCCAACCAGCGAAGGAATACAAGTTCATT
CTGGATCCCTTCCAACAGGAAGCCTTGTTGTGTCTAGATAACAATCAGTCTGTCCTTGTA
TCAGCCCACACATCCGCTGGAAAAACGGTAGTGGCAGAATATGCCATAGCAATGAGTCTT
CGCGACAAACAGCGTGTGATCTACACAACACCAATCAAAGCGCTCAGTAACCAAAAGTAT
AGGGACCTCTATGAGGAGTTTTCCGATGTGGGATTAATGACGGGTGACGTTACGATAAAC
CCGACTGCTTCATGTCTAGTTATGACAACAGAGATCTTGCGTAGTATGTTGTACCGGGGT
TCAGAAGTGATGCGTGAGGTCGCATGGGTCATCTTTGATGAGATCCATTACATGAGGAAC
AAAGAGCGCGGGGTGGTGTGGGAGGAAACGATCATCCTGCTCCCTGACAATGTCCGCTAC
GTCTTCCTCTCCGCCACCATCCCCAACGCTCGGCAATTTGCATCCTGGATCTGCCATCTG
CACAAGCAGCCGTGCCACGTGGTGTACACTGACTACCGACCGGTGCCACTGCAACATTAC
ATCTTCCCTGCTGGTGGAGACGGCCTTCATTTGGTGGTGGATGATAATGGTGATTTTCGT
GAAGATAATTTTAACACAGCGATGGCAGTGCTCAGGGATTCAGGGGATAATGCGAAAAGT
GATTTCCAACGACGGGGCAAGCAAGGGGGTCAACGTGGCAAAAGTGGCTGTGTGCAAATC
ATTGAACTTGTCATGGAGCGGAAGTTTCTACCAGCGATTGTCTTCTCGTTCAGCAAGAAG
GAATGTGAATTCTACGCAAATCAAGTCCTAAAACTCAAGTTTAACTCAGAGGCCGAGCGG
AAATTGGTGCAGGAAGTATTCGACAACGCAATGGATTCTCTCTCAGAGGAAGACCGACGG
CTCCCTCAGGTGGAAGCATGTCTGCCGTTCGTTTTAAACGGAATCGGAATTCACCACGGA
GGTCTACTGCCCATTATCAAGGAAACAATTGAAATTCTTTTCTCCGAAGGGTTGATCAAG
GTGTTATTTGCAACGGAGACCTTTTCGATGGGTGTGAACATGCCTGCACATACCGTCATA
TTCACCAGCATTCGTAAATTTGATGGCAAAGATTTTAGATGGATTACAGGAGGGGAGTAT
ATACAGATGAGTGGAAGAGCAGGGAGGAGAGGAATGGATGAGAACGGCCTTGTCATCATG
ATGGTCGATGAAAAGTTATCCCCGAATGTTGGCAAAGCTCTTGTTAAGGGATCACCGGAC
CCCCTTGACTCAGCGTTCAGACTAACATACAACATGGTGCTTAACCTACTGCGGGTGGAA
GAGATTAACCCAGAGTATATGCTCGAGAAATCCTTCTACCAGTTTCAACATTACACTGCC
ATACCGGAGATGCTTGCAAATGTCACGAAATTGGAGAAAGATTACTGTGGGATGAAGATA
AAGGAAGAAGAAGAATCAATGACTTATTACCGCATCCGGCAGCAACTCAATAAGCTTGCT
ACTCAACTCGAGGACTTTGTACATCTTCCCAAGTTCTGCTTGCCTTTCCTGCAACCTGGC
AGGCTAGTAAAGGTTTGGTGTAGTAGTCTATTTGACAGTATACATTACCAGTTTTTTTTA
CTAGAGCACGATTTTGGATGGGGTGTGGTGGTCAACTTTCAGAAGAAACAACCCAAACCA
AGTGGCCCCATGCGCACCGACGAGGAACCAGAGCCGCAATATGTGGTGGATGTGTTGCTC
AACTGTGACAAGGAGGGATTAAATTCAATTGCCGTCAGGTTGCCACGACCTGCCAAAGAT
GCCACGCGAAGCGAAATGGCGGTTGTGCCAATCATGCTGCCACTAATTAAAGCACTGAGC
TCGGTCAGGCTGTTCCTTCCTAAAGATTTAAGGCCGCTTGATAACAGACAGTCCTTGCTG
CGTGCGTTGGAGGAAGTTAACAAGAGGTTTCCGGATGGAATCCCCATTCTGGACCCCATT
GAAGATATGGTCATCAAGGACGAGCGTTTAAAGTCCATCGTCCGGAAGACCGAGGCATTT
GAGAGAAGGATGTACAAACATTCCTTGCATTCCAGGTCCGACATGGCCCAGATATATCAA
CAATGCGAGAAAAAGGCAAAATTGGCGAACAAAGTAAAAGAGGCGAAAAGAGCGTTGAAG
AAAGCACGGACGATCTTACAAATGGACGAGCTGAAGTGTAGGAAGCGAGTTCTGAGGCGA
CTTGGGTACGCCACTATGTCCGACGTCATTGAAACCAAAGGTCGAGTAGCATGCGAGATC
AGTGCTGCCGATGAACTTCTCCTCACAGAGCTCATCTTTAACGGGGTGTTCAACAACCTC
ACCCCTGCACAGTGCGCCGCATTGTTGTGTTGTTTTATATTTGATGAGAAGTCGAAAAGC
ATTCCAAAGTTAAGCGAGGAACTGGCAAGTCCATTACGACAGTTGCATGAAATAGCAAGA
AAAATTGCCAAGGTGTCAAACGAGTCCAAACTCCCATTGGAAGAAGAGGAATACGTCCAG
AAGTTTAAAACGATGCTGATGGATGTGGTTCACTCCTGGTGCAACGGATCCACTTTTGCA
CAAATCTCACAAATGACAGATGTCTTTGAAGGAAGCATAATAAGGTGCATGAGAAGACTT
GAAGAGCTGCTGCGGGAAATGTGCCACGCTGCCAAAGCAATCGGGAACACACATCTTGAA
AACAAGTTTTCTGAAGCGATCCAACTTATAAAAAGAGACATCATTTTCGCTGCTAGCTTG
TATTTATAATAAATCAATAGCGTCAATTTTTTTAATTTTAAGGTGCACAGAAACGGGTAA
AATAAAAGGCAAATGGTTTGCCTACAATTCAATAGGTCAAAGTCCCCATTTGATTTGTTC
CAATTTAACAACCACTGCCTTCACTACAATGATGTTTTCGCAACAATTTTCAATAATGAA
GTTGTCATTTGAGTGGTTTGAGGCCCAATTTCGCCCTCAGTTCGTTCGCTTCCTGGATTT
CCAAATCTTCATTATTTTTCGCCTTCTTGCTATGCT

InterProScan

PIRSF
Ski2-like (IPR016438) - T[9-962] 0.0
SMART
Helicase_ATP-bd (IPR014001) - T[37-220] 2.6E-31
Pfam
DEAD/DEAH_box_helicase_dom (IPR011545) - T[43-188] 2.9E-16
ProSiteProfiles
Helicase_ATP-bd (IPR014001) - T[49-205] 23.166
SUPERFAMILY
P-loop_NTPase (IPR027417) - T[52-190] 1.59E-46 - T[255-311] 1.59E-46 - T[351-445] 1.59E-46
ProSiteProfiles
Helicase_C (IPR001650) - T[276-480] 12.107
CDD
Helicase_C (IPR001650) - T[279-441] 2.89057E-13
SMART
Helicase_C (IPR001650) - T[342-431] 6.2E-16
Pfam
Helicase_C (IPR001650) - T[355-431] 5.2E-7
Pfam
rRNA_proc-arch_dom (IPR025696) - T[485-761] 5.8E-79
SMART
Ski2_C (IPR012961) - T[785-962] 5.3E-95
Pfam
Ski2_C (IPR012961) - T[788-957] 1.5E-58

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
MTREX_HUMAN 69.142 % 1397 0
SKIV2_HUMAN 36.438 % 570 0