- Transcript 'Phfumi.CG.MTP2014.S6...' >
- Transcript 'KH2012:KH.C1.416.v1....' >
- Transcript 'Cisavi.CG.ENS81.R48....'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R48.328435-339133.09806.t
Possible name(s)
COPA; COPB2; PAFAH1B1
Gene model
Location
R48 [328,507 / 339,034]
Amino acid sequence
Length: 1,213
>Cisavi.CG.ENS81.R48.328435-339133.09806.p
SRMLTKFETKSARVKGLSFHPKRPWVLSSLHNGCIQLWDYRMCTLIDKFEEHDGPVRGVC
FHNQQPLFVSGGDDYKIKIWNYKLRRCLFTLLGHLDYIRTAVFHHEYPWILSASDDQTIR
IWNWQSRNCIAVLTGHNHYVMSAHFHPTEDLIVSASLDQTARVWDISGLRKKNLSPGGSS
IEETIRGTPGAGSGGPSSIELFGSTDFMVKHVLEGHDRGVNWACFHPSLPVVVTAADDRL
VKLWRMNESKAWEVDSCRGHYNNVACCVFHPRQDLIISASEDKSIRVWDMGKRTSINSFR
REERFWILGCHPSLNLFAAGHDNGMVIFKLERERPAFATNANMLYYVKEKYLRRLDFTTS
KDIPVMQLKSGSKTSVYALSYNAAENAVLVTSRASNIENSHYDLYQVPKNVDSSNPDYSK
RASGVTSIWVARNRFAVLDRTHTIVIKNLKNDIMKKIQVPRVDEIFYAGSGSLLMRNSDG
ISLYDVQQKRDLASVKITKVKYVVWSNDMTHVALLAKHNIAICNRKLQSLSTIHENVRVK
SGAWEESGVFIYTTSNHIKYALTNGDHGIIRTLDLPIYITRVRATNVYCLDRETRPRVLA
IDPTEFKFKMALVNRKYDEVLHMVRNSKLVGQSIIAYLQQKGYPEVALHFVKDDKTRFTL
AVECGDIEVALAAAKALDDKQCWEALGEVALASGNHQVVEMAYQRTKNFDKLSFLYLLTG
NLEKLRKMMKIGKKLFCCCSKWEVGLLVNVAERVKVLRGCGQKSLAYLTAKTHGLDEEAS
QLEDEDSPSIPENAVLLQPPPPIQQCEENWPLLTVSKGKFNLAVETGGAVGGLAADVDLD
VDDGGWGDDVDIILDEDGAIVDDEFQDADDGWDVDDDDLDLPADLDIAVDVVITLKTLEN
IDIAGTTQTQVWCNNSQLPVDHILAGSFDTAFRLLQDQVGVVDFAPYKSIFMHTYSRSRT
AYTALSGIPPMFATPHRNWREAGSKAGLPVVGLTLATLAARLQDAYKLTTQGKFDDAIVK
FREILLSVPLLVVDNKQEISEAQQLISICREYVVGLSMEQERKQLPKSNLDEQKRICEMA
AYLTHCQWQPVHLILALRTAQNLFFKLKNYKGAAIFARRLLDLGPKPDVAMQTRKIIAAC
DKNPRDTHELRYDAHNPFDICAASYIPIYRGKPIEKCPLSGACYDPTFKGETCRVTSCTE
IGKSCMGLRVSSI
Nucleotide sequence
Length: 3,823
>Cisavi.CG.ENS81.R48.328435-339133.09806.t
AGCAGAATGCTGACGAAGTTTGAAACAAAGTCTGCCCGTGTCAAAGGGCTATCTTTCCAT
CCGAAGAGACCGTGGGTGTTGTCTTCACTCCACAATGGTTGCATTCAACTATGGGACTAC
AGAATGTGCACATTGATCGATAAGTTTGAGGAACATGATGGTCCTGTTAGAGGTGTCTGC
TTCCACAATCAACAACCATTGTTTGTCTCTGGTGGTGATGATTACAAAATCAAGATTTGG
AACTATAAACTACGAAGATGTTTATTCACCTTGCTTGGACATCTGGATTACATCAGGACA
GCTGTGTTCCATCATGAATATCCATGGATCCTAAGTGCCTCAGATGACCAGACCATCAGA
ATATGGAACTGGCAATCCCGGAATTGCATTGCGGTGCTTACCGGCCACAACCACTATGTG
ATGTCTGCACATTTCCACCCAACTGAGGATCTCATTGTGTCCGCTTCTCTTGACCAAACC
GCAAGAGTGTGGGACATTTCAGGATTACGCAAGAAGAACTTATCACCGGGTGGCAGCAGC
ATAGAGGAGACAATTCGGGGAACCCCTGGTGCTGGTAGTGGGGGTCCAAGTTCTATCGAG
TTGTTTGGAAGCACAGACTTTATGGTCAAACATGTTTTAGAGGGTCACGACCGTGGTGTG
AACTGGGCTTGCTTCCATCCAAGCTTGCCTGTCGTCGTTACTGCTGCCGACGATCGTCTT
GTCAAGTTATGGAGGATGAATGAGTCGAAAGCTTGGGAGGTGGACTCGTGCAGGGGCCAC
TACAACAATGTGGCTTGCTGTGTCTTTCATCCCCGCCAGGATCTTATCATTAGCGCTTCG
GAGGATAAATCGATCCGGGTGTGGGATATGGGAAAGAGGACCAGCATAAACTCTTTCAGA
AGGGAGGAGAGGTTCTGGATCTTGGGTTGCCACCCAAGTTTAAACTTATTTGCTGCTGGC
CATGATAATGGGATGGTGATTTTTAAACTGGAGAGGGAGCGTCCAGCTTTCGCCACCAAT
GCCAACATGCTGTATTATGTAAAAGAGAAATATCTTCGGCGACTCGATTTTACCACCAGC
AAAGATATACCTGTCATGCAGCTGAAAAGTGGTTCAAAAACCAGCGTGTATGCTCTGTCC
TACAACGCTGCTGAAAACGCAGTGCTGGTCACGTCCAGAGCTTCTAACATTGAGAATTCT
CACTACGACTTATACCAAGTACCCAAGAATGTGGATTCTTCTAACCCTGACTACAGTAAG
AGAGCATCAGGTGTGACATCAATTTGGGTGGCCCGGAACCGCTTTGCCGTGCTTGACCGC
ACACACACCATTGTCATCAAGAATCTGAAGAACGACATCATGAAGAAGATTCAAGTGCCC
AGAGTGGATGAGATCTTCTATGCAGGAAGTGGCTCCTTGCTGATGAGGAACTCAGACGGC
ATCTCATTATATGATGTGCAGCAGAAAAGGGATCTGGCTTCAGTGAAGATCACTAAAGTG
AAATACGTGGTTTGGTCGAACGATATGACGCATGTGGCACTCCTCGCTAAGCACAACATC
GCCATCTGCAACCGCAAGCTCCAATCACTCTCCACCATCCATGAGAATGTGCGAGTAAAG
TCCGGAGCTTGGGAGGAGAGTGGAGTCTTCATCTACACCACGTCGAACCACATCAAATAT
GCTCTCACTAATGGTGATCATGGGATAATCCGCACCCTCGACCTTCCCATCTACATCACC
CGCGTACGTGCCACCAATGTTTATTGCTTGGACCGTGAAACTCGTCCAAGAGTGCTTGCC
ATCGACCCCACGGAATTCAAATTTAAGATGGCGCTGGTAAATCGCAAATACGATGAGGTG
CTTCACATGGTGAGGAACAGCAAGTTGGTCGGTCAGTCCATCATTGCGTATCTGCAGCAG
AAGGGTTACCCTGAGGTGGCACTGCACTTCGTGAAAGATGACAAGACGAGATTTACTCTC
GCTGTCGAGTGCGGTGATATTGAGGTTGCACTTGCGGCAGCAAAAGCTCTCGACGACAAA
CAATGTTGGGAGGCACTTGGAGAAGTTGCTCTTGCTAGTGGAAACCACCAAGTGGTGGAA
ATGGCGTACCAGCGAACAAAGAATTTCGACAAATTGTCTTTCCTCTATCTGCTTACTGGA
AACTTGGAAAAACTGCGAAAAATGATGAAAATTGGTAAGAAATTATTTTGTTGTTGTTCA
AAGTGGGAAGTGGGACTTTTAGTTAATGTTGCTGAGCGAGTGAAAGTCCTTCGAGGATGC
GGACAGAAGTCTCTCGCTTACCTCACAGCGAAGACCCATGGATTGGATGAAGAGGCAAGC
CAACTTGAGGATGAAGACTCCCCATCTATCCCAGAGAACGCGGTGCTCCTGCAACCTCCA
CCTCCCATTCAGCAGTGCGAGGAGAACTGGCCTCTTCTCACCGTGAGCAAAGGTAAGTTC
AACCTTGCAGTGGAAACAGGAGGAGCAGTTGGAGGACTTGCAGCAGATGTTGATCTGGAT
GTGGATGATGGAGGGTGGGGAGATGATGTGGACATTATCCTCGATGAGGACGGTGCCATC
GTGGATGACGAGTTCCAGGATGCTGATGACGGATGGGATGTTGATGATGATGATCTTGAT
CTTCCTGCCGATCTTGATATCGCTGTTGATGTGGTAATTACTTTAAAAACATTGGAAAAC
ATTGATATTGCAGGCACCACACAGACCCAAGTTTGGTGCAACAATTCCCAACTTCCTGTG
GATCATATATTGGCTGGCTCATTCGATACTGCGTTCCGGTTGCTGCAAGACCAAGTTGGA
GTGGTTGACTTTGCACCTTATAAGTCCATCTTCATGCACACATATTCTCGATCACGCACG
GCATACACTGCTCTATCGGGGATTCCCCCAATGTTTGCTACCCCACACCGCAACTGGAGG
GAAGCGGGGTCCAAAGCTGGATTGCCGGTTGTGGGTCTCACCCTAGCTACGTTGGCGGCC
CGTTTACAGGATGCATACAAACTTACCACACAAGGAAAGTTTGATGACGCGATTGTGAAA
TTCCGTGAAATCCTGCTTTCTGTTCCTCTGTTAGTGGTTGATAACAAACAAGAGATAAGT
GAGGCACAACAGTTGATTAGCATTTGTCGGGAATATGTCGTCGGTCTCTCAATGGAACAA
GAACGAAAACAACTCCCCAAATCGAACCTCGATGAGCAGAAGAGAATATGTGAAATGGCA
GCCTACCTGACCCACTGTCAATGGCAACCTGTTCACCTCATACTTGCTCTAAGAACAGCA
CAAAACCTCTTCTTTAAACTCAAGAATTACAAGGGAGCTGCTATATTTGCTCGTCGATTG
CTTGATCTCGGCCCCAAGCCCGATGTAGCCATGCAAACTCGCAAGATAATAGCTGCATGC
GATAAAAACCCCCGTGATACCCATGAGTTACGCTACGATGCCCACAACCCATTCGATATT
TGTGCTGCTTCATATATTCCAATCTATCGGGGAAAACCGATTGAGAAGTGCCCATTAAGT
GGTGCATGCTACGATCCAACTTTTAAAGGTGAAACCTGCAGAGTGACCTCTTGTACCGAG
ATCGGCAAAAGTTGCATGGGCCTGCGAGTCAGCTCTATACAATTCCGTTAATGCCATTGT
ATTTGTTTAAGATCGTATCTATGTACAGAGCAGAACTATACTTACGTCGTGCACTCAAGC
CAAGTTATTATACTTGAAGTGCAATTAGTTCGACAGCACTGGACCATTAAACCATATGGT
TAAAGAAAATAGACAAATGATTACCCGTTTATGAACCCTATTT
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[1-331] 2.1E-124 |
| SMART |
WD40_repeat (IPR001680) - T[1-39] 4.4 - T[42-81] 3.7E-7 - T[84-123] 4.8E-7 - T[126-165] 6.4E-10 - T[206-245] 2.2E-5 - T[250-289] 1.5E-7 |
| PIRSF |
Coatomer_asu (IPR016391) - T[1-1212] 0.0 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[4-170] 1.7E-70 - T[209-327] 1.7E-70 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[7-298] 48.248 |
| Pfam |
WD40_repeat (IPR001680) - T[12-39] 0.2 - T[46-81] 1.1E-5 - T[86-123] 3.7E-7 - T[128-165] 9.8E-6 - T[211-244] 0.0027 - T[254-289] 7.7E-7 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[49-90] 12.547 - T[91-132] 12.38 - T[133-167] 14.418 - T[213-254] 11.712 - T[257-298] 14.418 |
| PRINTS |
G-protein_beta_WD-40_rep (IPR020472) - T[110-124] 5.8E-7 - T[152-166] 5.8E-7 - T[276-290] 5.8E-7 |
| ProSitePatterns |
WD40_repeat_CS (IPR019775) - T[152-166] . - T[276-290] . |
| Pfam |
Coatomer_WD-assoc_reg (IPR006692) - T[354-774] 8.2E-129 |
| Pfam |
Coatomer_asu_C (IPR010714) - T[817-1212] 9.7E-164 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| COPA_HUMAN | 70.517 % | 1836 | 0 |
| COPB2_HUMAN | 25.781 % | 251 | 2.04E-69 |
| LIS1_HUMAN | 26.689 % | 114 | 7.23E-27 |