- Transcript 'Cisavi.CG.ENS81.R48....'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R48.328435-339133.09808.t
Possible name(s)
COPA; COPB2; PAFAH1B1
Gene model
Location
R48 [329,319 / 339,028]
Amino acid sequence
Length: 1,187
>Cisavi.CG.ENS81.R48.328435-339133.09808.p
MLTKFETKSARVKGLSFHPKRPWVLSSLHNGCIQLWDYRMCTLIDKFEEHDGPVRGVCFH
NQQPLFVSGGDDYKIKIWNYKLRRCLFTLLGHLDYIRTAVFHHEYPWILSASDDQTIRIW
NWQSRNCIAVLTGHNHYVMSAHFHPTEDLIVSASLDQTARVWDISGLRKKNLSPGGSSIE
ETIRGTPGAGSGGPSSIELFGSTDFMVKHVLEGHDRGVNWACFHPSLPVVVTAADDRLVK
LWRMNESKAWEVDSCRGHYNNVACCVFHPRQDLIISASEDKSIRVWDMGKRTSINSFRRE
ERFWILGCHPSLNLFAAGHDNGMVIFKLERERPAFATNANMLYYVKEKYLRRLDFTTSKD
IPVMQLKRILTTTYTKYPRMWILLTLTVRSFYKKNPFDKMYLSILLHGFTVINIKCPFVI
LALTSHRQTYYLSMWGTQNSFKATNWTDKRASGVTSIWVARNRFAVLDRTHTIVIKNLKN
DIMKKIQVPDVDEIFYAGSGSLLMRNSDGISLYDVQQKRDLASVKITKVKYVVWSNDMTH
VALLAKHNIAICNRKLQSLSTIHENVRVKSGAWEESGVFIYTTSNHIKYALTNGDHGIIR
TLDLPIYITRVRATNVYCLDRETRPRVLAIDPTEFKFKMALVNRKYDEVLHMVRNSKLVG
QSIIAYLQQKGYPEVALHFVKDDKTRFTLAVECGDIEVALAAAKALDDKQCWEALGEVAL
ASGNHQVVEMAYQRTKNFDKLSFLYLLTGNLEKLRKMMKIGKKLFCCCSKLRSILRDVAE
RVKVLRGCGQKSLAYLTAKTHGLDEEASQLEDEDSPSIPENAVLLQPPPPIQQCEENWPL
LTVSKGKFNLAVETVKSQALVKSLLQPNWLQHNIYQFWPGGAVGGLAADVDLDVDDGGWG
DDVDIILDEDGAIVDDEFQDADDGADFRSGAGEGGGWDVDDDDLDLPADLDIAVDVGGDG
EGYFVAPTKGSGVNIINWFWCNNSQLPVDHILAGSFDTAFRLLQDQVGVVDFAPYKSIFM
HTYSRSRTAYTALSGIPPMFATPHRNWREAGCVAAILDINLKNISLKFFFLQDAYKLTTQ
GKFDDAIVKFREILLSVPLLVVDNKQEISELISICREYVVGLSMEQERKQLPKSNLDEQK
RICEMAAYLTHCQWQPVHLILALRTAQNLFFKLKNYKVCSGPTNLYH
Nucleotide sequence
Length: 3,561
>Cisavi.CG.ENS81.R48.328435-339133.09808.t
ATGCTGACGAAGTTTGAAACAAAGTCTGCCCGTGTCAAAGGGCTATCTTTCCATCCGAAG
AGACCGTGGGTGTTGTCTTCACTCCACAATGGTTGCATTCAACTATGGGACTACAGAATG
TGCACATTGATCGATAAGTTTGAGGAACATGATGGTCCTGTTAGAGGTGTCTGCTTCCAC
AATCAACAACCATTGTTTGTCTCTGGTGGTGATGATTACAAAATCAAGATTTGGAACTAT
AAACTACGAAGATGTTTATTCACCTTGCTTGGACATCTGGATTACATCAGGACAGCTGTG
TTCCATCATGAATATCCATGGATCCTAAGTGCCTCAGATGACCAGACCATCAGAATATGG
AACTGGCAATCCCGGAATTGCATTGCGGTGCTTACCGGCCACAACCACTATGTGATGTCT
GCACATTTCCACCCAACTGAGGATCTCATTGTGTCCGCTTCTCTTGACCAAACCGCAAGA
GTGTGGGACATTTCAGGATTACGCAAGAAGAACTTATCACCGGGTGGCAGCAGCATAGAG
GAGACAATTCGGGGAACCCCTGGTGCTGGTAGTGGGGGTCCAAGTTCTATCGAGTTGTTT
GGAAGCACAGACTTTATGGTCAAACATGTTTTAGAGGGTCACGACCGTGGTGTGAACTGG
GCTTGCTTCCATCCAAGCTTGCCTGTCGTCGTTACTGCTGCCGACGATCGTCTTGTCAAG
TTATGGAGGATGAATGAGTCGAAAGCTTGGGAGGTGGACTCGTGCAGGGGCCACTACAAC
AATGTGGCTTGCTGTGTCTTTCATCCCCGCCAGGATCTTATCATTAGCGCTTCGGAGGAT
AAATCGATCCGGGTGTGGGATATGGGAAAGAGGACCAGCATAAACTCTTTCAGAAGGGAG
GAGAGGTTCTGGATCTTGGGTTGCCACCCAAGTTTAAACTTATTTGCTGCTGGCCATGAT
AATGGGATGGTGATTTTTAAACTGGAGAGGGAGCGTCCAGCTTTCGCCACCAATGCCAAC
ATGCTGTATTATGTAAAAGAGAAATATCTTCGGCGACTCGATTTTACCACCAGCAAAGAT
ATACCTGTCATGCAGCTGAAAAGAATTCTCACTACGACTTATACCAAGTACCCAAGAATG
TGGATTCTTCTAACCCTGACTGTAAGATCATTTTATAAAAAAAATCCTTTTGATAAAATG
TATTTGTCAATTCTATTACATGGTTTTACCGTTATTAATATTAAATGCCCTTTTGTTATA
CTTGCACTAACTTCCCACCGTCAAACATATTATTTAAGTATGTGGGGAACCCAAAACAGT
TTTAAAGCTACAAATTGGACCGATAAGAGAGCATCAGGTGTGACATCAATTTGGGTGGCC
CGGAACCGCTTTGCCGTGCTTGACCGCACACACACCATTGTCATCAAGAATCTGAAGAAC
GACATCATGAAGAAGATTCAAGTGCCCGATGTGGATGAGATCTTCTATGCAGGAAGTGGC
TCCTTGCTGATGAGGAACTCAGACGGCATCTCATTATATGATGTGCAGCAGAAAAGGGAT
CTGGCTTCAGTGAAGATCACTAAAGTGAAATACGTGGTTTGGTCGAACGATATGACGCAT
GTGGCACTCCTCGCTAAGCACAACATCGCCATCTGCAACCGCAAGCTCCAATCACTCTCC
ACCATCCATGAGAATGTGCGAGTAAAGTCCGGAGCTTGGGAGGAGAGTGGAGTCTTCATC
TACACCACGTCGAACCACATCAAATATGCTCTCACTAATGGTGATCATGGGATAATCCGC
ACCCTCGACCTTCCCATCTACATCACCCGCGTACGTGCCACCAATGTTTATTGCTTGGAC
CGTGAAACTCGTCCAAGAGTGCTTGCCATCGACCCCACGGAATTCAAATTTAAGATGGCG
CTGGTAAATCGCAAATACGATGAGGTGCTTCACATGGTGAGGAACAGCAAGTTGGTCGGT
CAGTCCATCATTGCGTATCTGCAGCAGAAGGGTTACCCTGAGGTGGCACTGCACTTCGTG
AAAGATGACAAGACGAGATTTACTCTCGCTGTCGAGTGCGGTGATATTGAGGTTGCACTT
GCGGCAGCAAAAGCTCTCGACGACAAACAATGTTGGGAGGCACTTGGAGAAGTTGCTCTT
GCTAGTGGAAACCACCAAGTGGTGGAAATGGCGTACCAGCGAACAAAGAATTTCGACAAA
TTGTCTTTCCTCTATCTGCTTACTGGAAACTTGGAAAAACTGCGAAAAATGATGAAAATT
GGTAAGAAATTATTTTGTTGTTGTTCAAAGCTGCGCTCTATCTTGCGAGATGTTGCTGAG
CGAGTGAAAGTCCTTCGAGGATGCGGACAGAAGTCTCTCGCTTACCTCACAGCGAAGACC
CATGGATTGGATGAAGAGGCAAGCCAACTTGAGGATGAAGACTCCCCATCTATCCCAGAG
AACGCGGTGCTCCTGCAACCTCCACCTCCCATTCAGCAGTGCGAGGAGAACTGGCCTCTT
CTCACCGTGAGCAAAGGTAAGTTCAACCTTGCAGTGGAAACAGTAAAATCACAGGCCTTA
GTAAAATCACTCTTACAGCCTAATTGGCTACAACACAACATTTATCAATTTTGGCCAGGA
GGAGCAGTTGGAGGACTTGCAGCAGATGTTGATCTGGATGTGGATGATGGAGGGTGGGGA
GATGATGTGGACATTATCCTCGATGAGGACGGTGCCATCGTGGATGACGAGTTCCAGGAT
GCTGATGACGGTGCGGATTTCAGGAGTGGGGCTGGGGAAGGAGGAGGATGGGATGTTGAT
GATGATGATCTTGATCTTCCTGCCGATCTTGATATCGCTGTTGATGTGGGTGGGGATGGA
GAGGGATATTTTGTAGCTCCAACCAAAGGTTCGGGGGTTAACATTATAAATTGGTTTTGG
TGCAACAATTCCCAACTTCCTGTGGATCATATATTGGCTGGCTCATTCGATACTGCGTTC
CGGTTGCTGCAAGACCAAGTTGGAGTGGTTGACTTTGCACCTTATAAGTCCATCTTCATG
CACACATATTCTCGATCACGCACGGCATACACTGCTCTATCGGGGATTCCCCCAATGTTT
GCTACCCCACACCGCAACTGGAGGGAAGCGGGTTGTGTTGCTGCAATTCTTGACATCAAT
TTGAAAAACATTTCCTTAAAGTTTTTTTTCCTGCAGGATGCATACAAACTTACCACACAA
GGAAAGTTTGATGACGCGATTGTGAAATTCCGTGAAATCCTGCTTTCTGTTCCTCTGTTA
GTGGTTGATAACAAACAAGAGATAAGTGAGTTGATTAGCATTTGTCGGGAATATGTCGTC
GGTCTCTCAATGGAACAAGAACGAAAACAACTCCCCAAATCGAACCTCGATGAGCAGAAG
AGAATATGTGAAATGGCAGCCTACCTGACCCACTGTCAATGGCAACCTGTTCACCTCATA
CTTGCTCTAAGAACAGCACAAAACCTCTTCTTTAAACTCAAGAATTACAAGGTATGCTCT
GGGCCAACCAATTTGTACCAC
| PIRSF |
Coatomer_asu (IPR016391) - T[1-386] 5.7E-225 - T[408-1184] 8.8E-245 |
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[1-329] 2.7E-124 |
| SMART |
WD40_repeat (IPR001680) - T[2-37] 5.1 - T[40-79] 3.7E-7 - T[82-121] 4.8E-7 - T[124-163] 6.4E-10 - T[204-243] 2.2E-5 - T[248-287] 1.5E-7 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[5-296] 48.248 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[5-168] 1.73E-70 - T[207-325] 1.73E-70 |
| Pfam |
WD40_repeat (IPR001680) - T[12-37] 0.22 - T[44-79] 1.1E-5 - T[84-121] 3.6E-7 - T[126-163] 9.5E-6 - T[209-242] 0.0026 - T[252-287] 7.5E-7 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[47-88] 12.547 - T[89-130] 12.38 - T[131-165] 14.418 - T[211-252] 11.712 - T[255-296] 14.418 |
| PRINTS |
G-protein_beta_WD-40_rep (IPR020472) - T[108-122] 5.5E-7 - T[150-164] 5.5E-7 - T[274-288] 5.5E-7 |
| ProSitePatterns |
WD40_repeat_CS (IPR019775) - T[150-164] . - T[274-288] . |
| Pfam |
Coatomer_WD-assoc_reg (IPR006692) - T[443-802] 2.6E-123 |
| Pfam |
Coatomer_asu_C (IPR010714) - T[891-1180] 3.7E-103 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| COPA_HUMAN | 65.109 % | 1557 | 0 |
| COPB2_HUMAN | 25.312 % | 249 | 5.09E-69 |
| LIS1_HUMAN | 26.689 % | 114 | 6.34E-27 |