- Transcript 'Harore.CG.MTP2014.S9...' >
- EST 'AHC0AAA234YK23_RM1' >
- Transcript 'Haaura.CG.MTP2014.S2...' >
- Transcript 'Cisavi.CG.ENS81.R48....'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R48.328435-339133.09809.t
Possible name(s)
COPA; COPB2; PAFAH1B1
Gene model
Location
R48 [331,772 / 339,133]
Amino acid sequence
Length: 253
>Cisavi.CG.ENS81.R48.328435-339133.09809.p
MLTKFETKSARVKGLSFHPKRPWVLSSLHNGCIQLWDYRMCTLIDKFEEHDGPVRGVCFH
NQQPLFVSGGDDYKIKIWNYKLRRCLFTLLGHLDYIRTAVFHHEYPWILSASDDQTIRIW
NWQSRNCIAVLTGHNHYVMSAHFHPTEDLIVSASLDQTARVWDISGLRKKNLSPGGSSIE
ETIRGTPGAGSGGPSSIELFGSTDFMVKHVLEGHDRGVNWACFHPSLPVVVTATSTSHSA
VRGELASSHREQR
Nucleotide sequence
Length: 865
>Cisavi.CG.ENS81.R48.328435-339133.09809.t
TTTTTTCCGTTTAAGGTATTTATTTTGCTGAAAGTTTAGGTAAGGCTTAAATTACCTAAC
ATCTGAAATTCTTCAGAGAAGCAACCTTCACAATTGAACAGCAGAATGCTGACGAAGTTT
GAAACAAAGTCTGCCCGTGTCAAAGGGCTATCTTTCCATCCGAAGAGACCGTGGGTGTTG
TCTTCACTCCACAATGGTTGCATTCAACTATGGGACTACAGAATGTGCACATTGATCGAT
AAGTTTGAGGAACATGATGGTCCTGTTAGAGGTGTCTGCTTCCACAATCAACAACCATTG
TTTGTCTCTGGTGGTGATGATTACAAAATCAAGATTTGGAACTATAAACTACGAAGATGT
TTATTCACCTTGCTTGGACATCTGGATTACATCAGGACAGCTGTGTTCCATCATGAATAT
CCATGGATCCTAAGTGCCTCAGATGACCAGACCATCAGAATATGGAACTGGCAATCCCGG
AATTGCATTGCGGTGCTTACCGGCCACAACCACTATGTGATGTCTGCACATTTCCACCCA
ACTGAGGATCTCATTGTGTCCGCTTCTCTTGACCAAACCGCAAGAGTGTGGGACATTTCA
GGATTACGCAAGAAGAACTTATCACCGGGTGGCAGCAGCATAGAGGAGACAATTCGGGGA
ACCCCTGGTGCTGGTAGTGGGGGTCCAAGTTCTATCGAGTTGTTTGGAAGCACAGACTTT
ATGGTCAAACATGTTTTAGAGGGTCACGACCGTGGTGTGAACTGGGCTTGCTTCCATCCA
AGCTTGCCTGTCGTCGTTACTGCAACCTCCACCTCCCATTCAGCAGTGCGAGGAGAACTG
GCCTCTTCTCACCGTGAGCAAAGGT
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[1-247] 8.2E-87 |
| SMART |
WD40_repeat (IPR001680) - T[2-37] 5.1 - T[40-79] 3.7E-7 - T[82-121] 4.8E-7 - T[124-163] 6.4E-10 - T[204-243] 21.0 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[4-235] 5.72E-53 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[5-172] 36.622 |
| Pfam |
WD40_repeat (IPR001680) - T[12-37] 0.032 - T[44-79] 1.5E-6 - T[84-121] 4.9E-8 - T[126-163] 1.3E-6 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[47-88] 12.547 - T[89-130] 12.38 - T[131-165] 14.418 |
| PRINTS |
G-protein_beta_WD-40_rep (IPR020472) - T[66-80] 1.0E-6 - T[108-122] 1.0E-6 - T[150-164] 1.0E-6 |
| ProSitePatterns |
WD40_repeat_CS (IPR019775) - T[150-164] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| COPA_HUMAN | 77.178 % | 410 | 2.07E-135 |
| COPB2_HUMAN | 35.2 % | 155 | 4.37E-43 |
| LIS1_HUMAN | 40 % | 99.4 | 4.47E-24 |