- Clone 'cien196599' >
- Transcript 'Cisavi.CG.ENS81.R117...' >
- Clone 'AHC0AAA223YC09' >
- Transcript 'Boleac.CG.SB_v3.S141...' >
- Transcript 'Cisavi.CG.ENS81.R4.8...'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R4.856294-864945.13779.t
Possible name(s)
PAX3; PAX6; PAX7
Gene model
Location
R4 [856,293 / 864,870]
Amino acid sequence
Length: 499
>Cisavi.CG.ENS81.R4.856294-864945.13779.p
MATYDSCRQASNMALCFNRESLPHKGHSGMNQLGGMFVNGRPLPDSIRQKIVEFAHNGAR
PCDISRILQVSNGCVSKILARYYETGTIRPRAIGGSKPRVATPEVVNKIASYKRECPSIF
AWEIRDRLLNEGTCNNDNIPSVSSINRVLRNLNGDQSNGFNERSVCEQKGGQHLGLEWSL
TCNGWMPQQSICQEQIAAEGLMGLKGICKETEENTKDGNSEARLQLKRKLQRNRTSFTQI
QVEALEKEFERTHYPDVFARERLASKIDLPEARIQVWFSNRRAKWRREEKIRRQRNTSSS
DGPDAMRRSNDLQGTADQCGVYSNMTQHHTPVAPQLAAYHMPPESYTGMNGYHMTTLPAP
QSTKVEHFSAMPRMHEPSYLYGLSGSGQANITPPPQYAYDHDRRIDDTAHHTIPTPPNSG
NQPSPEHDQHGHQMQPLGGGIYQATLTGMHAGHHPSLVGGHPVDQSASAAMVVPSLTSLG
NQGPFHPTPEAYWQPGIQQ
Nucleotide sequence
Length: 1,793
>Cisavi.CG.ENS81.R4.856294-864945.13779.t
ATGGCGACATACGATTCCTGCAGACAAGCAAGCAACATGGCACTTTGCTTTAACCGGGAG
AGTTTACCCCATAAAGGTCACAGTGGTATGAACCAACTCGGCGGTATGTTTGTTAACGGC
CGACCTCTTCCAGACAGTATTCGGCAAAAAATTGTCGAATTTGCGCACAATGGTGCGCGC
CCTTGCGACATCTCGCGGATTCTTCAAGTATCTAACGGATGTGTCAGTAAAATTCTTGCC
AGGTACTACGAAACTGGAACCATTCGGCCCCGAGCAATTGGTGGCAGCAAACCAAGAGTG
GCCACCCCAGAAGTGGTCAACAAAATCGCATCCTACAAACGAGAATGCCCAAGCATATTT
GCATGGGAAATAAGGGACAGACTACTGAACGAAGGAACCTGCAATAACGATAATATTCCA
AGTGTTTCCTCGATTAACCGTGTTCTTCGAAATCTTAACGGCGACCAAAGCAACGGGTTC
AATGAAAGAAGTGTTTGTGAACAAAAGGGCGGTCAACATTTGGGTCTTGAGTGGTCATTA
ACGTGCAACGGATGGATGCCCCAACAAAGTATCTGCCAAGAGCAAATTGCTGCCGAGGGC
CTTATGGGACTCAAAGGTATATGTAAAGAGACTGAGGAAAACACAAAAGACGGAAACAGC
GAAGCAAGACTTCAACTGAAGAGAAAACTGCAGAGAAACCGAACCTCATTCACCCAAATA
CAAGTGGAAGCTCTGGAAAAAGAGTTTGAAAGAACGCATTACCCTGATGTGTTTGCCCGC
GAACGACTTGCTTCGAAAATTGATTTGCCAGAAGCAAGAATACAGGTCTGGTTCTCGAAT
AGGCGAGCAAAATGGCGCCGTGAAGAAAAGATTCGTCGGCAGCGCAACACTTCCTCCAGT
GACGGACCCGATGCCATGCGCAGATCGAACGATCTACAGGGCACGGCGGACCAATGTGGA
GTTTACTCCAATATGACACAGCATCACACACCCGTGGCTCCTCAATTAGCTGCGTACCAC
ATGCCACCTGAGTCGTACACTGGGATGAACGGGTACCATATGACGACACTCCCTGCCCCA
CAATCCACAAAAGTTGAACATTTTTCAGCAATGCCCCGAATGCACGAGCCATCGTATTTG
TACGGCCTTTCGGGTTCGGGCCAGGCCAACATAACACCACCACCACAGTATGCATATGAC
CACGACCGTAGAATTGACGATACTGCTCATCACACTATCCCAACTCCACCAAACTCTGGT
AACCAGCCATCACCCGAGCACGATCAACATGGTCACCAAATGCAGCCGTTGGGTGGCGGT
ATATACCAAGCAACCTTGACAGGCATGCACGCAGGTCATCACCCCTCTTTGGTTGGAGGA
CACCCTGTTGACCAATCAGCATCGGCCGCCATGGTCGTTCCATCTTTGACATCACTAGGC
AACCAGGGACCGTTTCACCCAACACCAGAAGCATACTGGCAGCCTGGCATTCAACAGGGA
TAAAAACTGATCGGCGGAAAATTGATTTTCAGTTCAAATATAATCACCCGAGGTAGCGCG
TCGCTTGGATTCCATAGATATAATCGAGTTGTAGTTTTTAATAAGGTTCGAAGTGTTTAC
AGAATTCTGTCATTATAAATCTACCTCTTTACTTATCACCGTAATTTATTCAATGTCTAC
ATATCTGGCTGAAATTGTGTCTCGATATTTTCATGTTTGTTTTTTTGGTATAAATGAATT
GACATTTCTGAGATGTACCATAGATAATATATATACCGTGTTAGCGCAATGTG
| Gene3D |
WH-like_DNA-bd_sf (IPR036388) - T[19-94] 4.0E-40 - T[95-158] 8.1E-33 |
| Pfam |
Paired_dom (IPR001523) - T[26-150] 7.8E-69 |
| CDD |
Paired_dom (IPR001523) - T[26-152] 1.10455E-80 |
| SMART |
Paired_dom (IPR001523) - T[26-150] 6.0E-88 |
| ProSiteProfiles |
Paired_dom (IPR001523) - T[26-152] 63.037 |
| SUPERFAMILY |
Homeobox-like_sf (IPR009057) - T[28-151] 2.15E-38 - T[223-289] 3.17E-22 |
| PRINTS |
Paired_dom (IPR001523) - T[30-45] 8.4E-41 - T[48-66] 8.4E-41 - T[68-85] 8.4E-41 - T[86-103] 8.4E-41 |
| ProSitePatterns |
Paired_dom (IPR001523) - T[60-76] . |
| ProSiteProfiles |
Homeobox_dom (IPR001356) - T[228-288] 19.742 |
| SMART |
Homeobox_dom (IPR001356) - T[230-292] 1.7E-24 |
| Pfam |
Homeobox_dom (IPR001356) - T[232-287] 2.3E-21 |
| CDD |
Homeobox_dom (IPR001356) - T[232-289] 1.96218E-23 |
| ProSitePatterns |
Homeobox_CS (IPR017970) - T[263-286] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PAX7_HUMAN | 52.239 % | 257 | 8.94E-80 |
| PAX3_HUMAN | 50.758 % | 265 | 5.89E-83 |
| PAX6_HUMAN | 59.551 % | 383 | 8.18E-130 |