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- Transcript 'Cisavi.CG.ENS81.R4.8...'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R4.856294-864945.13780.t
Possible name(s)
PAX3; PAX6; PAX7
Gene model
Location
R4 [858,066 / 862,289]
Amino acid sequence
Length: 366
>Cisavi.CG.ENS81.R4.856294-864945.13780.p
LLHKSPVIAGHSGMNQLGGMFVNGRPLPDSIRQKIVEFAHNGARPCDISRILQVSNGCVS
KILARYYETGTIRPRAIGGSKPRVATPEVVNKIASYKRECPSIFAWEIRDRLLNEGTCNN
DNIPSVSSINRVLRNLNGDQSNGFNERSVCEQKGGQHLDRSTTKVASHFPFDAAANSKIN
RVIMNQVGPRSIPACHRSIRSSRRPKTPSKFRLKPELLDYERSILGTKYTDDVSRVKYQN
AIYFISKMKKRTTTIRKYETFSILPRKTINQARPNQDNPSQNSKETEENTKDGNSEARLQ
LKRKLQRNRTSFTQIQVEALEKEFERTHYPDVFARERLASKIDLPEARIQVWFSNRRAKW
RREEKI
Nucleotide sequence
Length: 1,098
>Cisavi.CG.ENS81.R4.856294-864945.13780.t
TTACTTCACAAATCTCCGGTTATTGCAGGTCACAGTGGTATGAACCAACTCGGCGGTATG
TTTGTTAACGGCCGACCTCTTCCAGACAGTATTCGGCAAAAAATTGTCGAATTTGCGCAC
AATGGTGCGCGCCCTTGCGACATCTCGCGGATTCTTCAAGTATCTAACGGATGTGTCAGT
AAAATTCTTGCCAGGTACTACGAAACTGGAACCATTCGGCCCCGAGCAATTGGTGGCAGC
AAACCAAGAGTGGCCACCCCAGAAGTGGTCAACAAAATCGCATCCTACAAACGAGAATGC
CCAAGCATATTTGCATGGGAAATAAGGGACAGACTACTGAACGAAGGAACCTGCAATAAC
GATAATATTCCAAGTGTTTCCTCGATTAACCGTGTTCTTCGAAATCTTAACGGCGACCAA
AGCAACGGGTTCAATGAAAGAAGTGTTTGTGAACAAAAGGGCGGTCAACATTTGGACCGC
AGCACGACCAAGGTTGCCTCGCATTTCCCTTTTGACGCTGCAGCTAATTCCAAGATAAAC
CGAGTTATTATGAATCAAGTTGGACCGCGATCGATACCGGCGTGTCATCGATCCATCCGC
AGCTCCCGACGACCAAAAACTCCGTCGAAGTTTCGTTTAAAACCCGAGCTACTCGATTAT
GAGCGATCGATTTTGGGAACGAAATACACCGATGACGTGTCCAGAGTTAAGTATCAAAAC
GCCATATACTTTATAAGTAAAATGAAGAAAAGGACCACTACAATCAGAAAATATGAAACT
TTTTCAATACTGCCACGCAAAACGATTAACCAAGCACGGCCAAATCAAGATAATCCTTCT
CAGAATAGTAAAGAGACTGAGGAAAACACAAAAGACGGAAACAGCGAAGCAAGACTTCAA
CTGAAGAGAAAACTGCAGAGAAACCGAACCTCATTCACCCAAATACAAGTGGAAGCTCTG
GAAAAAGAGTTTGAAAGAACGCATTACCCTGATGTGTTTGCCCGCGAACGACTTGCTTCG
AAAATTGATTTGCCAGAAGCAAGAATACAGGTCTGGTTCTCGAATAGGCGAGCAAAATGG
CGCCGTGAAGAAAAGATT
| Gene3D |
WH-like_DNA-bd_sf (IPR036388) - T[3-78] 3.8E-40 - T[79-160] 5.6E-33 |
| Pfam |
Paired_dom (IPR001523) - T[10-134] 4.3E-69 |
| CDD |
Paired_dom (IPR001523) - T[10-136] 4.63889E-79 |
| SMART |
Paired_dom (IPR001523) - T[10-134] 6.0E-88 |
| ProSiteProfiles |
Paired_dom (IPR001523) - T[10-136] 63.037 |
| SUPERFAMILY |
Homeobox-like_sf (IPR009057) - T[12-135] 1.19E-38 - T[302-365] 1.41E-22 |
| PRINTS |
Paired_dom (IPR001523) - T[14-29] 2.9E-41 - T[32-50] 2.9E-41 - T[52-69] 2.9E-41 - T[70-87] 2.9E-41 |
| ProSitePatterns |
Paired_dom (IPR001523) - T[44-60] . |
| ProSiteProfiles |
Homeobox_dom (IPR001356) - T[303-363] 19.742 |
| SMART |
Homeobox_dom (IPR001356) - T[305-365] 1.9E-20 |
| CDD |
Homeobox_dom (IPR001356) - T[307-364] 1.95093E-20 |
| Pfam |
Homeobox_dom (IPR001356) - T[307-362] 1.4E-21 |
| ProSitePatterns |
Homeobox_CS (IPR017970) - T[338-361] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PAX5_HUMAN | 73.016 % | 208 | 5.75E-64 |
| PAX2_HUMAN | 74.4 % | 211 | 5.92E-65 |
| PAX6_HUMAN | 90.476 % | 248 | 5.24E-79 |