- Transcript 'Phmamm.CG.MTP2014.S1...' >
- Transcript 'Cisavi.CG.ENS81.R4.8...'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R4.856294-864945.13782.t
Possible name(s)
PAX3; PAX6; PAX7
Gene model
Location
R4 [858,078 / 862,265]
Amino acid sequence
Length: 268
>Cisavi.CG.ENS81.R4.856294-864945.13782.p
AGHSGMNQLGGMFVNGRPLPDSIRQKIVEFAHNGARPCDISRILQVSNGCVSKILARYYE
TGTIRPRAIGGSKPRVATPEVVNKIASYKRECPSIFAWEIRDRLLNEGTCNNDNIPSVSS
INRVLRNLNGDQSNGFNERSVFKFCLLLIITSTWKWLTCQLIMNQVGPRSIPACHRSIRS
SRRPKTPSKFQTEENTKDGNSEARLQLKRKLQRNRTSFTQIQVEALEKEFERTHYPDVFA
RERLASKIDLPEARIQVWFSNRRAKWRR
Nucleotide sequence
Length: 804
>Cisavi.CG.ENS81.R4.856294-864945.13782.t
GCAGGTCACAGTGGTATGAACCAACTCGGCGGTATGTTTGTTAACGGCCGACCTCTTCCA
GACAGTATTCGGCAAAAAATTGTCGAATTTGCGCACAATGGTGCGCGCCCTTGCGACATC
TCGCGGATTCTTCAAGTATCTAACGGATGTGTCAGTAAAATTCTTGCCAGGTACTACGAA
ACTGGAACCATTCGGCCCCGAGCAATTGGTGGCAGCAAACCAAGAGTGGCCACCCCAGAA
GTGGTCAACAAAATCGCATCCTACAAACGAGAATGCCCAAGCATATTTGCATGGGAAATA
AGGGACAGACTACTGAACGAAGGAACCTGCAATAACGATAATATTCCAAGTGTTTCCTCG
ATTAACCGTGTTCTTCGAAATCTTAACGGCGACCAAAGCAACGGGTTCAATGAAAGAAGT
GTTTTTAAGTTTTGTCTGCTTTTGATAATCACTTCGACATGGAAGTGGCTTACATGTCAA
CTTATTATGAATCAAGTTGGACCGCGATCGATACCGGCGTGTCATCGATCCATCCGCAGC
TCCCGACGACCAAAAACTCCGTCGAAGTTTCAGACTGAGGAAAACACAAAAGACGGAAAC
AGCGAAGCAAGACTTCAACTGAAGAGAAAACTGCAGAGAAACCGAACCTCATTCACCCAA
ATACAAGTGGAAGCTCTGGAAAAAGAGTTTGAAAGAACGCATTACCCTGATGTGTTTGCC
CGCGAACGACTTGCTTCGAAAATTGATTTGCCAGAAGCAAGAATACAGGTCTGGTTCTCG
AATAGGCGAGCAAAATGGCGCCGT
| Gene3D |
WH-like_DNA-bd_sf (IPR036388) - T[1-70] 6.3E-40 - T[71-134] 3.0E-33 |
| Pfam |
Paired_dom (IPR001523) - T[2-126] 2.1E-69 |
| CDD |
Paired_dom (IPR001523) - T[2-128] 4.2368E-80 |
| SMART |
Paired_dom (IPR001523) - T[2-126] 6.0E-88 |
| ProSiteProfiles |
Paired_dom (IPR001523) - T[2-128] 63.037 |
| SUPERFAMILY |
Homeobox-like_sf (IPR009057) - T[4-127] 5.97E-39 - T[208-268] 5.13E-22 |
| PRINTS |
Paired_dom (IPR001523) - T[6-21] 1.0E-41 - T[24-42] 1.0E-41 - T[44-61] 1.0E-41 - T[62-79] 1.0E-41 |
| ProSitePatterns |
Paired_dom (IPR001523) - T[36-52] . |
| ProSiteProfiles |
Homeobox_dom (IPR001356) - T[209-268] 19.678 |
| SMART |
Homeobox_dom (IPR001356) - T[211-268] 1.1E-18 |
| Pfam |
Homeobox_dom (IPR001356) - T[213-268] 8.8E-22 |
| CDD |
Homeobox_dom (IPR001356) - T[213-268] 7.21871E-21 |
| ProSitePatterns |
Homeobox_CS (IPR017970) - T[244-267] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PAX3_HUMAN | 50.741 % | 249 | 4.23E-80 |
| PAX6_HUMAN | 68.635 % | 361 | 9.84E-125 |
| PAX4_HUMAN | 49.813 % | 239 | 4.63E-78 |