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TRANSCRIPT CARD

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  1. Clone 'cima810b14' > 
  2. Clone 'csma095k15' > 
  3. Clone 'citb032k23' > 
  4. Clone 'cien45188' > 
  5. Transcript 'Cisavi.CG.ENS81.R49....'

Transcript Model

Transcript Id

Cisavi.CG.ENS81.R49.860183-864395.13723.t

Possible name(s)

CDX1; CDX2; CDX4

Gene model

Cisavi.CG.ENS81.R49.860183-864395

Location

R49 [860,182 / 864,395]

Sequences

Amino acid sequence

Length: 380

>Cisavi.CG.ENS81.R49.860183-864395.13723.p
MLCYAIDQQKSSIGQNNMYRNPTPDPNPSPTSNQGFFQNYPPKDDVASRYSVPNYAPHQP
VPPSAEHFYPISGDYVSHFPTQPPTHLESTSWGAGGYSGSTFAPVMNSTWDVNTPFHSAH
HPIISSTGATYQIPSTISPTTAGNGDGSPGTVPTTLTGIECFATPPEMHGAPGLSALHAA
PLPVQRRPYEWINKNAYQNTPTQQVGKTRTKDKYRVVYSDHQRLELEKEFRFSRYITIRR
KAELAGHLCLSERQIKIWFQNRRAKERKATKKTGEPSKEHELEEDGADDDGHDHGVVTSS
PIQHMQNPFISPDMAREHAILEPRDVGIAHAPYYDIHANNSLSYTQLTPTDTKPIIPGKN
HRSLSSSSDDVTHAMTSQGV

Nucleotide sequence

Length: 1,408

>Cisavi.CG.ENS81.R49.860183-864395.13723.t
CGAATTTGTTTAAAACTTTCCGGGTCGAATTTTTCGAGCGAACGTCTCACAGCATTCCGC
AAAAATTGATGAACATCGCACCATGCTCTGTTATGCGATCGACCAGCAGAAGTCAAGCAT
AGGACAAAATAATATGTACCGCAACCCCACCCCTGACCCCAACCCATCTCCGACCAGTAA
CCAGGGCTTTTTCCAAAACTACCCGCCGAAAGATGACGTCGCGTCTCGGTACAGCGTGCC
GAACTATGCGCCGCATCAACCAGTTCCACCGTCGGCTGAACACTTTTACCCAATATCGGG
GGATTATGTGTCCCATTTTCCCACCCAACCACCAACCCATTTAGAAAGTACCAGCTGGGG
CGCTGGAGGGTATTCAGGGTCCACGTTCGCCCCGGTTATGAACTCGACGTGGGACGTTAA
CACCCCCTTTCATTCAGCTCATCACCCTATTATAAGTAGCACCGGGGCTACTTACCAAAT
CCCGTCGACCATATCCCCAACCACGGCTGGGAACGGCGACGGGAGCCCCGGGACAGTTCC
GACAACGCTGACGGGGATTGAGTGCTTCGCTACCCCGCCAGAGATGCATGGAGCTCCCGG
GCTATCTGCGCTCCATGCGGCTCCGCTTCCAGTCCAAAGACGACCGTACGAGTGGATCAA
CAAGAACGCTTATCAAAACACACCAACGCAACAAGTGGGCAAAACGCGAACAAAAGACAA
GTACAGAGTTGTATATTCGGATCACCAGCGGTTGGAACTGGAAAAGGAGTTCCGATTCAG
CAGATACATCACCATACGAAGAAAGGCGGAGTTGGCCGGTCACCTATGTCTCAGTGAAAG
ACAGATCAAAATTTGGTTTCAAAATCGGCGGGCGAAGGAAAGAAAAGCGACGAAAAAGAC
CGGTGAACCTTCCAAGGAACATGAATTGGAGGAAGATGGGGCGGACGACGACGGTCACGA
TCACGGTGTCGTTACATCGTCCCCGATCCAGCATATGCAAAACCCTTTTATTTCTCCCGA
CATGGCCCGAGAACACGCGATATTGGAGCCGCGAGATGTCGGTATAGCGCACGCGCCATA
TTACGATATTCACGCTAACAACTCGCTCAGTTATACTCAACTAACACCCACTGATACCAA
ACCGATTATCCCAGGCAAGAACCACCGGTCTTTGTCGTCATCAAGTGATGACGTCACACA
CGCTATGACATCACAGGGGGTTTGATGACGATATAAATACGAAATATTGCAATAGTTACC
TGTGTATTTATTCCATTAGAGCGCTGGAAATCCTACTGTCTGATGATCGGATGTTTGTTC
ACGCATAGACTCCATAGAACATGATATCGAATAAAGGCTCCGCGTGATAATGCACTTCTT
ACTGTTTCTGCGGTTTTCTATATTTGCG

InterProScan

SUPERFAMILY
Homeobox-like_sf (IPR009057) - T[200-269] 2.91E-21
ProSiteProfiles
Homeobox_dom (IPR001356) - T[209-269] 19.354
SMART
Homeobox_dom (IPR001356) - T[211-273] 2.3E-20
Pfam
Homeobox_dom (IPR001356) - T[213-268] 1.1E-18
CDD
Homeobox_dom (IPR001356) - T[213-268] 1.47351E-20
PRINTS
Homeobox_metazoa (IPR020479) - T[233-244] 8.7E-6 - T[248-258] 8.7E-6 - T[258-267] 8.7E-6
ProSitePatterns
Homeobox_CS (IPR017970) - T[244-267] .

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
CDX1_HUMAN 63 % 123 8.0E-33
CDX2_HUMAN 72.727 % 129 1.73E-34
CDX4_HUMAN 47.887 % 122 2.07E-32