Aniseed - Transcript Card

Transcript Model

Transcript Id

Cisavi.CG.ENS81.R5.2673069-2674974.05839.t

Possible name(s)

TUBA1C; TUBA3C; TUBA3D

Gene model

Cisavi.CG.ENS81.R5.2673069-2674974

Location

R5 [2,673,264 / 2,674,974]

Sequences

Amino acid sequence

Length: 448

>Cisavi.CG.ENS81.R5.2673069-2674974.05839.p
SEQCISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGNDDSFNTFFSETGAGK
HVPRGVFVDLEPTVVDEIRNGTYRQLFHPEQMITGKEDAANNYARGHYTIGKEIVDVVLD
RIRKLSDQCTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYGKKSKLEFAVYPAPQVSTA
VVEPYNSILTHTTLEHSDCAFMVDNEAIYDICRRNLDVDRPSYTNLNRLIGQIVSSITAS
LRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVGEITNACFEPANQ
MVKCDPRHGKYMACCMLYRGDVVPKDVNAAIACIKTKRTIQFVDWCPTGFKVGINYQPPT
VVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEA
REDLAALEKDYEEVGLDSGDGDGEDEDD

Nucleotide sequence

Length: 1,405

>Cisavi.CG.ENS81.R5.2673069-2674974.05839.t
AGCGAGCAGTGTATCTCAATTCATGTTGGTCAAGCCGGTGTTCAGATCGGTAATGCTTGT
TGGGAGCTGTACTGCTTGGAGCATGGAATCCAACCTGATGGGCAAATGCCGAGTGACAAG
ACTGTTGGCGGAAACGACGACTCATTCAACACTTTCTTTAGCGAGACCGGTGCTGGAAAA
CATGTACCCAGGGGGGTATTTGTAGACCTCGAGCCAACGGTTGTAGATGAAATTCGCAAT
GGTACGTACCGTCAATTGTTTCACCCCGAACAAATGATCACCGGAAAAGAGGACGCGGCA
AACAACTATGCACGTGGTCATTACACCATTGGAAAGGAGATTGTCGACGTTGTTCTCGAC
CGTATCCGAAAGCTGTCGGATCAATGCACCGGTTTGCAGGGTTTCTTAATTTTTCATTCC
TTCGGTGGTGGAACTGGTTCTGGTTTTGCATCGCTCTTGATGGAACGACTATCCGTAGAT
TACGGGAAGAAGTCTAAATTGGAATTTGCAGTTTACCCTGCCCCGCAGGTGTCGACGGCA
GTCGTTGAGCCTTACAACTCTATCCTCACCCATACAACGCTGGAACATTCCGATTGTGCG
TTTATGGTTGATAACGAGGCAATCTATGATATATGCCGTCGTAACTTGGACGTGGACCGT
CCATCTTACACTAATCTCAACCGGTTGATTGGTCAGATCGTGTCTTCGATCACAGCTTCG
CTGCGTTTCGATGGAGCTCTTAATGTCGACTTGACAGAATTCCAAACCAATTTGGTACCG
TACCCTCGAATACATTTTCCGTTGGTCACTTACGCTCCGGTCATATCGGCCGAAAAAGCT
TACCACGAGCAGCTGTCCGTTGGCGAAATTACCAACGCTTGCTTCGAACCTGCTAACCAG
ATGGTTAAATGTGATCCTCGTCATGGAAAGTACATGGCTTGCTGTATGCTGTACCGTGGA
GACGTTGTGCCCAAGGACGTCAATGCTGCGATTGCTTGCATCAAAACAAAGCGAACCATT
CAGTTTGTGGATTGGTGCCCGACTGGATTCAAGGTTGGGATCAACTACCAACCACCAACC
GTGGTACCAGGTGGTGACTTGGCGAAAGTTCAACGAGCAGTCTGCATGCTGAGCAACACG
ACCGCCATCGCAGAGGCTTGGGCTCGTCTCGACCACAAGTTCGATTTGATGTACGCCAAG
CGTGCATTTGTTCACTGGTATGTCGGTGAAGGTATGGAGGAGGGGGAATTCTCCGAAGCC
AGGGAGGATCTTGCTGCATTGGAGAAAGATTACGAGGAAGTTGGGTTGGACTCTGGAGAT
GGTGATGGGGAAGATGAAGATGATGAATACTAAATCGGATTTTAATTTAATTATCTTCCT
ATTATTTTTTATTTCCCTTTTTCTC

InterProScan

Gene3D	Tubulin/FtsZ_GTPase_sf (IPR036525) - T[2-267] 5.6E-126
SUPERFAMILY	Tubulin/FtsZ_GTPase_sf (IPR036525) - T[3-243] 2.88E-95
PANTHER	Tubulin (IPR000217) - T[3-445] 0.0
Pfam	Tubulin_FtsZ_GTPase (IPR003008) - T[4-212] 3.2E-65
PRINTS	Tubulin (IPR000217) - T[10-30] 4.0E-89 - T[53-72] 4.0E-89 - T[95-106] 4.0E-89 - T[108-132] 4.0E-89 - T[134-152] 4.0E-89 - T[153-174] 4.0E-89 - T[178-191] 4.0E-89 - T[191-211] 4.0E-89 - T[379-407] 4.0E-89
PRINTS	Alpha_tubulin (IPR002452) - T[18-33] 1.5E-117 - T[45-58] 1.5E-117 - T[88-101] 1.5E-117 - T[120-128] 1.5E-117 - T[148-160] 1.5E-117 - T[161-172] 1.5E-117 - T[213-225] 1.5E-117 - T[273-288] 1.5E-117 - T[320-341] 1.5E-117 - T[346-359] 1.5E-117 - T[359-378] 1.5E-117 - T[384-400] 1.5E-117 - T[421-437] 1.5E-117
SMART	Tubulin_FtsZ_GTPase (IPR003008) - T[49-245] 3.5E-76
ProSitePatterns	Tubulin_CS (IPR017975) - T[142-148] .
SUPERFAMILY	Tub_FtsZ_C (IPR008280) - T[245-434] 4.27E-86
SMART	Tubulin/FtsZ_2-layer-sand-dom (IPR018316) - T[247-392] 3.6E-58
Pfam	Tubulin/FtsZ_2-layer-sand-dom (IPR018316) - T[262-390] 1.4E-50
Gene3D	Tubulin/FtsZ_C_sf (IPR037103) - T[268-382] 1.8E-66
Gene3D	Tubulin_C (IPR023123) - T[383-436] 3.9E-34

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score
TBA3C_HUMAN	95.652 %	860
TBA3D_HUMAN	95.652 %	860
TBA1C_HUMAN	92.601 %	856