Aniseed - Transcript Card

Transcript Model

Transcript Id

Cisavi.CG.ENS81.R5.2700006-2716861.06077.t

Possible name(s)

TUBA1A; TUBA3C; TUBA3D

Gene model

Cisavi.CG.ENS81.R5.2700006-2716861

Location

R5 [2,700,005 / 2,716,179]

Sequences

Amino acid sequence

Length: 238

>Cisavi.CG.ENS81.R5.2700006-2716861.06077.p
MERLSVDYGKKSKLEFAVYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDIC
RRNLDVDRPSYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYA
PVISAEKAYHEQLSVGEITNACFEPCNQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIA
CIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLGKSSTSSLHAEQHDRHRRGLGSS

Nucleotide sequence

Length: 1,440

>Cisavi.CG.ENS81.R5.2700006-2716861.06077.t
AAGGAGATTGTCGACGTTGTTCTCGACCGTATCCGAAAGCTGTCGGATCAATGCACCGGT
TTGCAAGGTTTCTTGATTTTCCACTCCTTCGGTGGTGGAACTGGTTCTGGTTTTGCATCG
CTCTTGATGGAACGACTATCCGTAGATTACGGGAAGAAATCCAAATTGGAATTTGCAGTT
TACCCTGCCCCGCAGGTGTCGACGGCAGTCGTTGAGCCTTACAACTCGATTCTTACCACC
CATACAACGCTTGAACATTCCGATTGTGCGTTTATGGTTGATAACGAGGCAATCTATGAC
ATATGTCGTCGTAACTTGGACGTGGACCGTCCATCTTACACTAATCTCAACCGGTTGATT
GGTCAGATCGTGTCTTCGATCACAGCTTCGCTACGTTTCGATGGAGCTCTAAATGTAGAC
TTGACAGAATTCCAAACCAATTTGGTGCCGTACCCTCGAATACATTTTCCGTTGGTCACC
TACGCTCCGGTCATATCGGCCGAAAAAGCTTACCACGAGCAGCTGTCCGTTGGTGAGATT
ACCAATGCTTGCTTCGAGCCTTGTAACCAGATGGTTAAATGTGATCCTCGTCATGGAAAG
TACATGGCTTGCTGTATGCTGTACCGTGGAGATGTTGTGCCCAAGGACGTCAATGCTGCG
ATTGCTTGCATCAAAACAAAGCGAACCATTCAGTTTGTGGATTGGTGCCCGACTGGATTC
AAGGTTGGGATCAACTACCAACCACCAACCGTGGTACCAGGTGGTGACTTAGGCAAAAGT
TCAACGAGCAGTCTGCATGCTGAGCAACACGACCGCCATCGCAGAGGCTTGGGCTCGTCT
TGACCACAAGTTCGATTTGATGTACGCCAAGCGTGCATTTGTTCACTGGTATGTCGGTGA
AGGAATGGAGGAGGGGGAATTCTCCGAAGCCAGGGAGGATCTTGCTGCATTGGAGAAGGA
TTACGAAGAAGTTGGGTTGGACTCTGGAGATGGTGATGGGGAAGATGGAGAAGATGAATA
CTAAATCGGATTTTAATTTATTTGTCCTTCTAATATTTTTTTTACTTTCCTTTCTCTTTA
CCTAGCTTATAGCTTGGTGATTTTGTTTCAGATATTCGAGTTGAGGTTTCAAATACATCA
AATTAGGACATTGCTTAAACTTTTTGTTTGTGTTTGTAGAGCCGGTCGCAGTTCTAGTTC
GGAAAATCTGGTAACTTAGTAAGGTAAACGCACAGTTTCGGTCGATTGGCCCATCGTATA
TAAGCCATTGCTCTGCTGCATCGTTCTGAATCTACCGGCTAAGCACGCGTGGTACGGGCT
TTATTTCCTGATGGTGGGAATCTTAGTGCCACAACCGTAGAAGTTTGCTGCTCTTAAACT
TGCTGTAATCTTTTCAAACCGTTATCATGAAAGAGTAAAATTGTAAAAGTTTTTATAATA

InterProScan

Gene3D	Tubulin/FtsZ_GTPase_sf (IPR036525) - T[1-115] 9.0E-49
PANTHER	Tubulin (IPR000217) - T[1-218] 1.5E-153
SMART	Tubulin_FtsZ_GTPase (IPR003008) - T[1-93] 0.0058
SUPERFAMILY	Tubulin/FtsZ_GTPase_sf (IPR036525) - T[1-92] 7.72E-30
Pfam	Tubulin_FtsZ_GTPase (IPR003008) - T[2-60] 1.5E-11
PRINTS	Alpha_tubulin (IPR002452) - T[8-19] 3.0E-50 - T[61-73] 3.0E-50 - T[121-136] 3.0E-50 - T[168-189] 3.0E-50 - T[194-207] 3.0E-50 - T[207-226] 3.0E-50
PRINTS	Tubulin (IPR000217) - T[25-38] 3.8E-12 - T[39-59] 3.8E-12
SUPERFAMILY	Tub_FtsZ_C (IPR008280) - T[93-223] 1.77E-52
SMART	Tubulin/FtsZ_2-layer-sand-dom (IPR018316) - T[95-231] 5.6E-41
Pfam	Tubulin/FtsZ_2-layer-sand-dom (IPR018316) - T[110-213] 3.3E-42
Gene3D	Tubulin/FtsZ_C_sf (IPR037103) - T[116-225] 5.1E-57

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
TBA3C_HUMAN	95.853 %	444	1.76E-157
TBA3D_HUMAN	95.853 %	444	1.76E-157
TBA3E_HUMAN	95.392 %	441	1.48E-156