- Transcript 'Cisavi.CG.ENS81.R55....'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R55.784808-797787.01653.t
Possible name(s)
LHX1; LMX1A; LMX1B
Gene model
Location
R55 [784,807 / 797,787]
Amino acid sequence
Length: 653
>Cisavi.CG.ENS81.R55.784808-797787.01653.p
MLRSSFGKKSNVSRRNLKTSDQESSIMHVSNREMCFNSANEVAMLGREQYPDDRFMTSSS
VTSSNWSQIGEFGDLGQFDNLSNASPNGVYSDQSSARQNQLAENMKTDNSPITDDVIWRK
SPSSCKSDESLLGARDAEDVSEALCFSSISHCPSNTPLQQNHSVQMANLCQGCDIPIEDK
YLLHIGGLSWHESCAKCAICRRKLQRSCYFSDGQLFCKHDYQQTKRTCSGCGSKIEKEEL
VMRVMTSGYVYHVGCFACVTCKRLLRKGDEFVMNRYVLDEKSVTPSMSFTLQCKACWTDI
NSSMKSEPECPAVKPEAPIVEPKVIDTPALVSPGVGSDVTDAMMSPKSPSCVLSPKSDDD
DALSSDDDESTSGNLNSSKDDPMEDGKRPRENDDSDSKDSKRSKRPRTILNAVQRRAFKA
AFEVTPKPCRKVSLIFICYFRRFRETLAKDTGLTVRVVQVWFQNQRAKMKKLAKRQLSQE
AAAQKAREEFGYHAFDPMGPIPHQMSHMIPGSEGMMEKMFVQFHPHQMHGHVNGNRMGAP
WDQLQSDMIGFGQGQLYHDGANYPDNMGIPPNVTMTPQDNGMLPHAMRNHLMTSQPPFGD
GGGYQGNVHTHEGMHSSDMHVTSSHNGMTPSPGNDGTTPIDGLYSMQNSYFSS
Nucleotide sequence
Length: 1,962
>Cisavi.CG.ENS81.R55.784808-797787.01653.t
ATGCTGCGTTCCAGTTTTGGTAAGAAATCGAACGTATCTCGAAGAAATTTAAAAACAAGC
GATCAAGAGTCGAGTATCATGCACGTATCGAATAGAGAGATGTGTTTTAATTCTGCTAAC
GAAGTAGCCATGCTCGGCAGGGAACAATACCCTGATGATCGTTTCATGACATCATCAAGT
GTTACGTCATCAAACTGGTCCCAGATCGGGGAATTCGGGGACTTGGGTCAGTTCGACAAC
TTATCCAATGCATCGCCCAATGGCGTATACTCAGACCAGAGCAGTGCGCGACAAAACCAA
CTGGCAGAGAATATGAAAACGGACAATTCGCCAATAACCGACGATGTTATATGGAGGAAG
TCGCCATCCTCATGCAAAAGCGACGAGAGTTTGTTAGGAGCAAGAGACGCAGAAGATGTG
TCGGAAGCTCTTTGCTTCAGCAGCATATCGCATTGCCCGAGTAATACACCTCTGCAGCAA
AACCATTCAGTTCAAATGGCGAATTTGTGTCAAGGCTGCGATATTCCAATAGAGGACAAA
TATTTGCTTCATATCGGTGGTTTGTCGTGGCACGAAAGTTGTGCAAAGTGCGCCATCTGC
CGACGGAAACTCCAACGCTCCTGTTACTTTAGCGATGGGCAACTCTTCTGCAAGCACGAC
TACCAACAAACGAAGAGAACGTGCTCCGGCTGTGGTTCAAAGATCGAAAAAGAGGAATTG
GTCATGCGTGTTATGACGTCGGGGTATGTGTATCACGTGGGCTGCTTTGCCTGCGTCACG
TGCAAGAGGTTGTTGCGAAAAGGAGACGAGTTTGTTATGAACAGGTACGTACTCGACGAG
AAATCAGTTACCCCGAGCATGTCCTTTACTCTGCAATGCAAAGCGTGTTGGACAGATATA
AACTCATCAATGAAAAGTGAGCCAGAATGCCCAGCAGTAAAACCTGAGGCCCCAATTGTC
GAACCAAAAGTAATCGACACACCCGCGCTGGTCTCTCCGGGCGTTGGAAGTGACGTAACA
GACGCAATGATGTCACCAAAAAGCCCCTCTTGCGTTTTATCACCAAAAAGCGACGACGAT
GACGCATTATCGTCGGATGACGACGAATCGACTTCCGGAAATCTTAATTCGTCCAAAGAT
GACCCAATGGAGGACGGAAAACGGCCACGTGAAAACGATGACAGTGACAGTAAGGACAGC
AAGCGGTCCAAGCGACCGAGGACGATACTGAACGCGGTGCAGAGACGTGCGTTCAAAGCG
GCTTTTGAAGTAACTCCCAAGCCTTGTCGAAAGGTTAGTCTAATTTTTATTTGTTATTTC
CGTAGGTTCCGTGAGACGCTTGCGAAAGACACGGGGCTCACTGTGAGGGTGGTTCAAGTC
TGGTTCCAAAACCAGCGCGCGAAGATGAAGAAACTGGCAAAGCGACAACTTAGCCAAGAA
GCAGCTGCCCAGAAAGCTAGAGAGGAGTTCGGTTACCATGCTTTTGACCCAATGGGACCC
ATTCCGCACCAAATGTCGCACATGATACCCGGTTCGGAGGGAATGATGGAGAAAATGTTC
GTCCAATTCCATCCCCACCAAATGCATGGCCATGTTAACGGCAACCGCATGGGAGCGCCT
TGGGACCAATTGCAAAGCGATATGATCGGGTTTGGGCAAGGACAATTATACCATGACGGA
GCCAACTATCCAGATAACATGGGGATTCCCCCGAACGTGACAATGACGCCACAGGATAAC
GGAATGTTGCCCCACGCCATGAGAAATCATCTTATGACATCACAACCGCCCTTCGGCGAC
GGTGGCGGTTACCAAGGAAACGTGCACACCCATGAGGGAATGCATTCATCCGACATGCAT
GTTACGTCATCGCACAATGGTATGACGCCATCACCCGGAAATGACGGCACAACCCCGATA
GACGGATTGTATTCAATGCAAAACAGCTATTTTAGTTCCTGA
| ProSiteProfiles |
Znf_LIM (IPR001781) - T[168-227] 12.593 - T[228-303] 7.91 |
| SMART |
Znf_LIM (IPR001781) - T[169-220] 2.4E-13 - T[227-296] 0.002 |
| Pfam |
Znf_LIM (IPR001781) - T[170-224] 2.3E-11 - T[228-274] 9.8E-9 |
| ProSitePatterns |
Znf_LIM (IPR001781) - T[228-265] . |
| SUPERFAMILY |
Homeobox-like_sf (IPR009057) - T[392-472] 1.45E-13 |
| ProSiteProfiles |
Homeobox_dom (IPR001356) - T[401-472] 12.649 |
| SMART |
Homeobox_dom (IPR001356) - T[403-476] 6.5E-14 |
| CDD |
Homeobox_dom (IPR001356) - T[404-471] 2.26061E-16 |
| Pfam |
Homeobox_dom (IPR001356) - T[404-471] 6.7E-11 |
| ProSitePatterns |
Homeobox_CS (IPR017970) - T[447-470] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| LMX1A_HUMAN | 38.141 % | 186 | 5.39E-53 |
| LMX1B_HUMAN | 34.137 % | 211 | 5.24E-62 |
| LHX1_HUMAN | 28.602 % | 144 | 1.32E-37 |