- Transcript 'Phmamm.CG.MTP2014.S1...' >
- Transcript 'KH2012:KH.L153.79.v2...' >
- Transcript 'Cisavi.CG.ENS81.R55....'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R55.784808-797787.01654.t
Possible name(s)
LHX1; LMX1A; LMX1B
Gene model
Location
R55 [785,311 / 797,787]
Amino acid sequence
Length: 346
>Cisavi.CG.ENS81.R55.784808-797787.01654.p
LCQGCDIPIEDKYLLHIGGLSWHESCAKCAICRRKLQRSCYFSDGQLFCKHDYQQTKRTC
SGCGSKIEKEELVMRVMTSGYVYHVGCFACVTCKRLLRKGDEFVMNSDDDDALSSDDDES
TSGNLNSSKDDPMEDGKRSKPLYRPRENDDSDSKDSKRSKRPRTILNAVQRRAFKAAFEV
TPKPCRKVSLIFICYFRRFRETLAKDTGLTVRVVQVWFQNQRAKMKKLAKRQLSQEAAAQ
KAREEFGQLYHDGANYPDNMGIPPNVTMTPQDNGMLPHAMRNHLMTSQPPFGDGGGYQGN
VHTHEGMHSSDMHVTSSHNGMTPSPGNDGTTPIDGLYSMQNSYFSS
Nucleotide sequence
Length: 1,041
>Cisavi.CG.ENS81.R55.784808-797787.01654.t
TTGTGTCAAGGCTGCGATATTCCAATAGAGGACAAATATTTGCTTCATATCGGTGGTTTG
TCGTGGCACGAAAGTTGTGCAAAGTGCGCCATCTGCCGACGGAAACTCCAACGCTCCTGT
TACTTTAGCGATGGGCAACTCTTCTGCAAGCACGACTACCAACAAACGAAGAGAACGTGC
TCCGGCTGTGGTTCAAAGATCGAAAAAGAGGAATTGGTCATGCGTGTTATGACGTCGGGG
TATGTGTATCACGTGGGCTGCTTTGCCTGCGTCACGTGCAAGAGGTTGTTGCGAAAAGGA
GACGAGTTTGTTATGAACAGCGACGACGATGACGCATTATCGTCGGATGACGACGAATCG
ACTTCCGGAAATCTTAATTCGTCCAAAGATGACCCAATGGAGGACGGAAAACGCAGTAAA
CCGCTTTACAGGCCACGTGAAAACGATGACAGTGACAGTAAGGACAGCAAGCGGTCCAAG
CGACCGAGGACGATACTGAACGCGGTGCAGAGACGTGCGTTCAAAGCGGCTTTTGAAGTA
ACTCCCAAGCCTTGTCGAAAGGTTAGTCTAATTTTTATTTGTTATTTCCGTAGGTTCCGT
GAGACGCTTGCGAAAGACACGGGGCTCACTGTGAGGGTGGTTCAAGTCTGGTTCCAAAAC
CAGCGCGCGAAGATGAAGAAACTGGCAAAGCGACAACTTAGCCAAGAAGCAGCTGCCCAG
AAAGCTAGAGAGGAGTTCGGACAATTATACCATGACGGAGCCAACTATCCAGATAACATG
GGGATTCCCCCGAACGTGACAATGACGCCACAGGATAACGGAATGTTGCCCCACGCCATG
AGAAATCATCTTATGACATCACAACCGCCCTTCGGCGACGGTGGCGGTTACCAAGGAAAC
GTGCACACCCATGAGGGAATGCATTCATCCGACATGCATGTTACGTCATCGCACAATGGT
ATGACGCCATCACCCGGAAATGACGGCACAACCCCGATAGACGGATTGTATTCAATGCAA
AACAGCTATTTTAGTTCCTGA
| ProSiteProfiles |
Znf_LIM (IPR001781) - T[1-59] 12.137 - T[60-124] 7.623 |
| SMART |
Znf_LIM (IPR001781) - T[1-52] 2.4E-13 - T[59-117] 8.4E-4 |
| ProSitePatterns |
Znf_LIM (IPR001781) - T[2-36] . - T[60-97] . |
| Pfam |
Znf_LIM (IPR001781) - T[2-56] 9.5E-12 - T[60-106] 2.0E-9 |
| SUPERFAMILY |
Homeobox-like_sf (IPR009057) - T[147-228] 6.42E-14 |
| ProSiteProfiles |
Homeobox_dom (IPR001356) - T[157-228] 12.649 |
| SMART |
Homeobox_dom (IPR001356) - T[159-232] 6.5E-14 |
| CDD |
Homeobox_dom (IPR001356) - T[160-227] 6.64828E-16 |
| Pfam |
Homeobox_dom (IPR001356) - T[200-227] 3.2E-9 |
| ProSitePatterns |
Homeobox_CS (IPR017970) - T[203-226] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| LMX1A_HUMAN | 39.189 % | 205 | 3.63E-63 |
| LMX1B_HUMAN | 41.823 % | 231 | 4.67E-73 |
| LHX5_HUMAN | 32.567 % | 147 | 4.38E-41 |